Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47586 * 2 1 4 4 C 1.53004 * 109.47237 * 120.00413 * 2 1 3 5 5 N 1.46895 * 109.47035 * 174.99958 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47204 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00140 * 14 12 10 17 17 H 1.48498 * 109.47371 * 240.00040 * 14 12 10 18 18 N 1.46505 * 109.47290 * 240.00382 * 2 1 3 19 19 C 1.46499 * 119.99635 * 300.00119 * 18 2 1 20 20 C 1.34777 * 120.00341 * 119.99876 * 18 2 1 21 21 O 1.21284 * 119.99922 * 0.02562 * 20 18 2 22 22 C 1.50693 * 120.00131 * 180.02562 * 20 18 2 23 23 N 1.46497 * 109.47340 * 180.02562 * 22 20 18 24 24 C 1.46772 * 124.35131 * 269.73097 * 23 22 20 25 25 C 1.54655 * 105.38151 * 162.84905 * 24 23 22 26 26 C 1.54632 * 101.68826 * 25.76828 * 25 24 23 27 27 C 1.34423 * 124.35301 * 90.02027 * 23 22 20 28 28 O 1.21278 * 124.93679 * 0.43523 * 27 23 22 29 29 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47213 * 299.99995 * 1 2 3 31 31 H 1.09007 * 109.47274 * 59.99597 * 1 2 3 32 32 H 1.08996 * 109.46863 * 54.99800 * 4 2 1 33 33 H 1.09002 * 109.46661 * 294.99977 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.47391 * 89.99970 * 19 18 2 40 40 H 1.08997 * 109.47090 * 209.99357 * 19 18 2 41 41 H 1.09001 * 109.47529 * 329.99897 * 19 18 2 42 42 H 1.09000 * 109.47341 * 299.99998 * 22 20 18 43 43 H 1.08999 * 109.47158 * 60.00258 * 22 20 18 44 44 H 1.09000 * 110.24030 * 281.97895 * 24 23 22 45 45 H 1.09004 * 110.24391 * 43.97559 * 24 23 22 46 46 H 1.08997 * 111.19435 * 267.58703 * 25 24 23 47 47 H 1.09005 * 110.81909 * 143.77534 * 25 24 23 48 48 H 1.09003 * 110.48374 * 216.31005 * 26 25 24 49 49 H 1.08996 * 110.59774 * 93.71581 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5039 -0.8267 1.1903 6 6 4.0303 -1.5150 2.3766 7 6 5.5316 -1.6046 2.2806 8 8 6.1066 -1.1403 1.3188 9 7 6.2354 -2.2006 3.2634 10 6 7.6012 -2.2816 3.1763 11 1 8.1132 -1.8683 2.3199 12 6 8.3267 -2.8957 4.1899 13 7 7.7038 -3.3982 5.2322 14 14 10.1876 -3.0067 4.0708 15 1 10.6418 -2.3693 2.8088 16 1 10.8003 -2.3054 5.2275 17 1 10.6001 -4.4332 4.0818 18 7 2.0183 -0.6905 -1.1962 19 6 1.6643 -2.0931 -1.4281 20 6 2.7931 -0.0355 -2.0834 21 8 3.0865 1.1255 -1.8912 22 6 3.2950 -0.7457 -3.3141 23 7 4.1095 0.1749 -4.1112 24 6 3.5817 1.0419 -5.1713 25 6 4.6733 2.1115 -5.4079 26 6 5.9472 1.3665 -4.9462 27 6 5.4372 0.3301 -3.9694 28 8 6.1260 -0.2735 -3.1744 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2950 33 1 1.7516 -0.1584 2.1369 34 1 3.7995 -1.2884 0.3432 35 1 3.7559 -0.9573 3.2719 36 1 3.6095 -2.5191 2.4308 37 1 5.7755 -2.5716 4.0328 38 1 8.2103 -3.8271 5.9395 39 1 0.7375 -2.1443 -1.9995 40 1 2.4627 -2.5818 -1.9865 41 1 1.5294 -2.5969 -0.4710 42 1 3.9004 -1.6023 -3.0179 43 1 2.4470 -1.0878 -3.9074 44 1 3.4115 0.4651 -6.0804 45 1 2.6556 1.5154 -4.8452 46 1 4.4963 2.9970 -4.7975 47 1 4.7361 2.3739 -6.4641 48 1 6.6323 2.0539 -4.4498 49 1 6.4376 0.8849 -5.7921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = -88.054363 kcal Electronic energy + Delta-G solvation = -30641.969434 eV Core-core repulsion = 26411.648508 eV Total energy + Delta-G solvation = -4230.320926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72645 -39.66036 -38.16787 -36.86518 -36.27399 -34.58714 -33.72100 -33.11128 -31.68932 -31.09220 -27.71128 -27.58485 -27.52984 -27.01866 -24.92460 -23.20907 -22.21004 -21.75393 -19.77888 -19.13485 -18.87289 -17.80206 -17.67017 -16.87375 -16.65974 -16.20444 -15.90927 -15.78739 -15.19831 -14.98928 -14.42327 -14.34861 -13.89886 -13.85334 -13.72945 -13.62270 -13.46331 -13.35166 -13.12731 -12.98984 -12.77889 -12.60943 -12.51276 -12.27178 -12.13553 -11.81303 -11.64177 -11.55764 -11.53238 -11.33910 -11.17883 -11.03780 -10.91031 -10.26253 -10.13181 -10.02660 -9.75395 -9.42608 -8.81788 -8.76442 -8.31405 -7.94353 -7.85741 -6.33182 -3.73125 2.43602 2.62854 2.81390 3.09877 3.23196 3.32987 3.42328 4.01148 4.13600 4.22773 4.29397 4.32960 4.48368 4.64374 4.79928 4.84967 4.90566 4.92708 5.00542 5.10740 5.14303 5.21296 5.22169 5.28938 5.33491 5.35884 5.39375 5.47088 5.51772 5.52649 5.66921 5.68833 5.81610 5.83265 5.86145 6.03862 6.06941 6.27064 6.35753 6.49151 7.01594 7.27011 7.30162 7.64764 7.74013 8.13964 8.16744 8.23844 8.71741 9.28074 9.64128 10.17014 10.84980 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.003095 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.334860 B = 9045.116691 C =11303.048089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.109 0.891 4 C 0.049 3.951 5 N -0.663 5.663 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.573 6.573 9 N -0.567 5.567 10 C -0.295 4.295 11 H 0.103 0.897 12 C 0.020 3.980 13 N -0.905 5.905 14 Si 0.928 3.072 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.612 5.612 19 C 0.071 3.929 20 C 0.500 3.500 21 O -0.517 6.517 22 C 0.111 3.889 23 N -0.609 5.609 24 C 0.108 3.892 25 C -0.129 4.129 26 C -0.152 4.152 27 C 0.517 3.483 28 O -0.509 6.509 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.349 0.651 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.652 4.491 -19.733 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.127 0.873 4 C -0.081 4.081 5 N -0.297 5.297 6 C -0.081 4.081 7 C 0.225 3.775 8 O -0.456 6.456 9 N -0.204 5.204 10 C -0.424 4.424 11 H 0.121 0.879 12 C -0.181 4.181 13 N -0.547 5.547 14 Si 0.755 3.245 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.348 5.348 19 C -0.072 4.072 20 C 0.286 3.714 21 O -0.391 6.391 22 C -0.015 4.015 23 N -0.344 5.344 24 C -0.015 4.015 25 C -0.167 4.167 26 C -0.193 4.193 27 C 0.304 3.696 28 O -0.382 6.382 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.121 0.879 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.544 5.600 -19.408 26.755 hybrid contribution 0.176 -1.440 0.562 1.556 sum -17.367 4.160 -18.846 25.964 Atomic orbital electron populations 1.22078 0.94697 1.02180 1.02529 1.21159 0.93217 0.98993 0.83203 0.87308 1.22332 0.89204 0.98681 0.97894 1.59964 1.07292 1.57500 1.04897 1.21681 0.95242 0.96705 0.94511 1.19852 0.88115 0.84210 0.85345 1.90597 1.70985 1.50798 1.33197 1.41856 1.07378 1.51293 1.19913 1.19780 0.81564 1.34647 1.06441 0.87891 1.25239 1.00608 0.96964 0.95247 1.69624 1.36487 1.39123 1.09465 0.85814 0.82393 0.77803 0.78455 1.19162 1.20785 1.20820 1.47869 1.51544 1.12294 1.23063 1.21829 1.00818 0.81853 1.02730 1.21128 0.77887 0.87600 0.84738 1.90706 1.55686 1.16941 1.75788 1.21198 0.96618 0.92809 0.90922 1.47800 1.08059 1.42323 1.36249 1.22075 0.98065 0.91577 0.89821 1.22591 0.93442 0.98060 1.02618 1.22294 0.99032 0.98188 0.99753 1.20963 0.81835 0.83189 0.83617 1.90862 1.60445 1.49475 1.37430 0.92397 0.91220 0.92244 0.95434 0.89988 0.83126 0.89636 0.94173 0.77579 0.92065 0.92350 0.90901 0.90786 0.86946 0.87692 0.91113 0.90563 0.89732 0.89337 0.87885 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.19 37.15 0.34 -0.94 16 2 C 0.14 1.63 2.95 -67.93 -0.20 1.43 16 3 H 0.11 1.63 6.90 -51.93 -0.36 1.28 16 4 C 0.05 0.64 4.98 -3.82 -0.02 0.62 16 5 N -0.66 -12.10 6.12 -115.06 -0.70 -12.80 16 6 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16 7 C 0.44 11.30 7.82 -10.98 -0.09 11.21 16 8 O -0.57 -17.29 15.78 5.54 0.09 -17.20 16 9 N -0.57 -15.29 5.29 -10.96 -0.06 -15.35 16 10 C -0.29 -8.72 9.68 -14.93 -0.14 -8.87 16 11 H 0.10 3.24 7.16 -52.49 -0.38 2.87 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -25.61 13.05 55.50 0.72 -24.88 16 14 Si 0.93 22.16 29.55 -169.99 -5.02 17.14 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 N -0.61 -7.01 1.83 -173.93 -0.32 -7.32 16 19 C 0.07 0.55 9.28 59.85 0.56 1.10 16 20 C 0.50 6.99 7.74 -10.99 -0.09 6.91 16 21 O -0.52 -9.45 15.76 5.55 0.09 -9.36 16 22 C 0.11 1.22 4.97 -5.20 -0.03 1.19 16 23 N -0.61 -7.28 2.42 -173.67 -0.42 -7.70 16 24 C 0.11 0.83 7.36 -3.02 -0.02 0.80 16 25 C -0.13 -0.92 7.19 -25.00 -0.18 -1.10 16 26 C -0.15 -1.52 6.86 -26.74 -0.18 -1.71 16 27 C 0.52 7.82 8.02 -10.86 -0.09 7.73 16 28 O -0.51 -10.73 17.59 5.56 0.10 -10.63 16 29 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.03 0.31 6.88 -51.93 -0.36 -0.05 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.35 6.84 7.56 -39.29 -0.30 6.55 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 9.99 7.90 -40.82 -0.32 9.67 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 41 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 42 H 0.11 1.33 7.18 -51.93 -0.37 0.96 16 43 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -41.07 404.74 -7.48 -48.54 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -7.78 Total: 13.66 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: -0.26 Total: 19.81 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.78 Total: -68.06 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: 0.27 Total: -37.20 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -41.07 -7.48 -48.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.509 kcal (2) G-P(sol) polarization free energy of solvation -41.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds