Wall clock time and date at job start Sat Apr 11 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47337 * 2 1 4 4 C 1.34772 * 120.00080 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99894 * 179.97438 * 4 3 2 7 7 C 1.50704 * 109.46725 * 180.02562 * 6 4 3 8 8 O 1.21281 * 120.00328 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99258 * 180.02562 * 7 6 4 10 10 C 1.46922 * 120.63589 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.77421 * 126.36829 * 10 9 7 12 12 C 1.53042 * 109.31489 * 54.63715 * 11 10 9 13 13 C 1.53048 * 109.53665 * 298.63586 * 12 11 10 14 14 H 1.08996 * 109.52505 * 301.39688 * 13 12 11 15 15 N 1.46895 * 109.49493 * 181.31311 * 13 12 11 16 16 C 1.46906 * 110.99789 * 155.16054 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 C 1.46931 * 120.62559 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47177 * 60.00032 * 1 2 3 30 30 H 1.08994 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47043 * 300.00341 * 1 2 3 32 32 H 1.09003 * 109.47043 * 239.99659 * 2 1 3 33 33 H 1.08999 * 109.47177 * 119.99968 * 2 1 3 34 34 H 0.97003 * 119.99596 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46990 * 60.00558 * 6 4 3 36 36 H 1.08999 * 109.47191 * 300.00257 * 6 4 3 37 37 H 1.08993 * 109.59002 * 246.15378 * 10 9 7 38 38 H 1.09000 * 109.58230 * 6.44220 * 10 9 7 39 39 H 1.09000 * 109.50070 * 174.58758 * 11 10 9 40 40 H 1.08998 * 109.50005 * 294.65480 * 11 10 9 41 41 H 1.08991 * 109.46462 * 178.61749 * 12 11 10 42 42 H 1.08995 * 109.45688 * 58.65065 * 12 11 10 43 43 H 1.00902 * 111.00273 * 279.11577 * 15 13 12 44 44 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 45 45 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 46 46 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58700 * 113.84496 * 28 9 7 49 49 H 1.09005 * 109.70478 * 353.48536 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3529 3.0482 0.0001 8 8 5.9592 1.9978 0.0001 9 7 6.0267 4.2154 0.0001 10 6 5.3062 5.4958 0.0006 11 6 5.8143 6.3470 1.1686 12 6 7.3357 6.4820 1.0723 13 6 7.9795 5.0969 1.1681 14 1 7.6959 4.6277 2.1102 15 7 9.4411 5.2303 1.1072 16 6 10.1013 4.0919 1.7600 17 6 11.5963 4.2632 1.6772 18 8 12.0656 5.2380 1.1287 19 7 12.4118 3.3333 2.2125 20 6 13.7719 3.4894 2.1376 21 1 14.1897 4.3573 1.6493 22 6 14.6126 2.5309 2.6901 23 7 14.1041 1.4750 3.2847 24 14 16.4656 2.7432 2.5874 25 1 16.7803 4.0068 1.8736 26 1 17.0347 2.7946 3.9581 27 1 17.0551 1.5973 1.8494 28 6 7.4959 4.2315 -0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4821 3.5626 0.8895 36 1 3.4829 3.5616 -0.8905 37 1 5.4885 6.0181 -0.9385 38 1 4.2377 5.3137 0.1162 39 1 5.3578 7.3358 1.1238 40 1 5.5502 5.8667 2.1107 41 1 7.6972 7.1076 1.8883 42 1 7.5999 6.9401 0.1192 43 1 9.7555 5.3326 0.1538 44 1 9.7979 4.0468 2.8058 45 1 9.8135 3.1682 1.2579 46 1 12.0365 2.5539 2.6515 47 1 14.6911 0.8058 3.6700 48 1 7.8565 4.6509 -0.9396 49 1 7.8746 3.2160 0.1158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207873021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:47 Heat of formation + Delta-G solvation = -105.365447 kcal Electronic energy + Delta-G solvation = -29420.550773 eV Core-core repulsion = 25189.479182 eV Total energy + Delta-G solvation = -4231.071591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77873 -39.54809 -38.30188 -37.49285 -35.53455 -35.09285 -33.81025 -32.55332 -31.93531 -31.18297 -30.41520 -29.28746 -26.21894 -25.54477 -24.10985 -23.41370 -22.47655 -21.44344 -20.64649 -19.36375 -19.01322 -17.89410 -17.82893 -16.95265 -16.44472 -16.22423 -15.96984 -15.80321 -15.42604 -15.06863 -14.66356 -14.62590 -14.33817 -14.26480 -13.92099 -13.83135 -13.65596 -13.38492 -13.19892 -13.11509 -12.88135 -12.67381 -12.36147 -12.29394 -12.18470 -11.85512 -11.59717 -11.54530 -11.46204 -11.15713 -11.05002 -11.00126 -10.71702 -10.30415 -10.26621 -10.17414 -9.58908 -9.47270 -9.41370 -8.94850 -8.40045 -7.99406 -7.90577 -6.36472 -3.77429 2.33473 2.45283 2.55864 3.03374 3.20305 3.30426 3.37827 3.95856 4.06399 4.09689 4.28403 4.36716 4.57637 4.60854 4.62281 4.66648 4.73603 4.77324 4.83144 4.86433 4.89410 5.08682 5.20653 5.24410 5.30140 5.36979 5.43119 5.45735 5.54189 5.57598 5.61900 5.69443 5.80170 5.88674 6.04249 6.06647 6.12480 6.19164 6.25483 6.34710 7.08784 7.19489 7.23671 7.60215 7.65283 7.93376 8.11388 8.11996 8.66281 9.22727 9.59743 10.10862 10.81306 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002028 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.133142 B =13802.296431 C =15467.322375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.508 3.492 5 O -0.489 6.489 6 C -0.163 4.163 7 C 0.511 3.489 8 O -0.492 6.492 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.134 4.134 12 C -0.108 4.108 13 C 0.076 3.924 14 H 0.080 0.920 15 N -0.656 5.656 16 C 0.048 3.952 17 C 0.442 3.558 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.083 3.917 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.350 0.650 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.393 0.607 47 H 0.271 0.729 48 H 0.068 0.932 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.115 5.128 -5.947 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.394 5.394 4 C 0.292 3.708 5 O -0.360 6.360 6 C -0.206 4.206 7 C 0.296 3.704 8 O -0.364 6.364 9 N -0.348 5.348 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.146 4.146 13 C -0.036 4.036 14 H 0.098 0.902 15 N -0.288 5.288 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.042 4.042 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -30.686 4.708 -5.669 31.558 hybrid contribution 0.099 -0.692 -0.343 0.778 sum -30.587 4.016 -6.011 31.430 Atomic orbital electron populations 1.22000 0.94410 1.03320 1.02428 1.21281 0.94104 0.82919 1.02604 1.46035 1.06857 1.08918 1.77551 1.20053 0.82336 0.90880 0.77525 1.90901 1.54351 1.45405 1.45345 1.21623 0.95567 0.97080 1.06339 1.19954 0.88941 0.83751 0.77711 1.90890 1.69099 1.30025 1.46357 1.48072 1.06786 1.05526 1.74459 1.21794 0.96214 0.84332 0.99424 1.21935 0.96903 1.00028 0.98452 1.21494 0.93123 0.96718 1.03246 1.21973 0.88424 0.95360 0.97832 0.90167 1.60264 1.02355 1.42176 1.23957 1.21749 0.94381 0.92092 1.00263 1.19783 0.87365 0.85280 0.84874 1.90517 1.76764 1.31384 1.48233 1.41877 1.06491 1.21207 1.50413 1.19756 0.80754 1.07680 1.34679 0.87846 1.25279 1.00759 0.95297 0.96702 1.69628 1.36213 1.10659 1.37692 0.85795 0.82181 0.78407 0.77908 1.19221 1.20773 1.20787 1.22534 0.79159 1.03053 0.99417 0.92008 0.90751 0.91966 0.91500 0.91451 0.76837 0.86136 0.86220 0.91104 0.90005 0.90370 0.91398 0.90514 0.91598 0.82995 0.89569 0.93566 0.77407 0.91920 0.91354 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 10.03 37.16 0.37 -0.16 16 2 C 0.11 0.74 6.39 -4.04 -0.03 0.71 16 3 N -0.74 -4.62 5.56 -60.29 -0.33 -4.95 16 4 C 0.51 5.21 7.82 -10.99 -0.09 5.12 16 5 O -0.49 -8.03 14.18 -18.96 -0.27 -8.29 16 6 C -0.16 -1.14 4.53 -29.03 -0.13 -1.27 16 7 C 0.51 6.21 7.69 -10.98 -0.08 6.13 16 8 O -0.49 -8.86 13.60 -18.96 -0.26 -9.11 16 9 N -0.61 -6.22 2.97 -172.74 -0.51 -6.74 16 10 C 0.11 0.63 6.34 -3.71 -0.02 0.61 16 11 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 12 C -0.11 -1.05 5.49 -26.69 -0.15 -1.20 16 13 C 0.08 0.94 2.62 -67.57 -0.18 0.77 16 14 H 0.08 1.07 7.80 -51.93 -0.41 0.66 16 15 N -0.66 -10.66 5.88 -107.84 -0.63 -11.30 16 16 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 17 C 0.44 10.79 7.82 -10.98 -0.09 10.70 16 18 O -0.58 -16.19 15.78 5.54 0.09 -16.11 16 19 N -0.56 -14.86 5.29 -10.96 -0.06 -14.91 16 20 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 21 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.36 13.05 55.50 0.72 -24.63 16 24 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.08 1.02 5.69 -3.69 -0.02 1.00 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.02 8.47 -40.82 -0.35 0.67 16 35 H 0.12 0.46 7.69 -51.93 -0.40 0.06 16 36 H 0.12 0.43 7.94 -51.93 -0.41 0.02 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.25 5.93 -51.93 -0.31 -0.06 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.35 5.83 8.12 -39.29 -0.32 5.52 16 44 H 0.09 1.51 8.06 -51.93 -0.42 1.09 16 45 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 46 H 0.39 10.01 7.90 -40.82 -0.32 9.69 16 47 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 49 H 0.09 1.43 6.48 -51.93 -0.34 1.09 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -39.27 399.70 -8.91 -48.18 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.82 Total: 11.26 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -0.84 Total: 13.98 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.82 Total: -62.53 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.44 Total: -33.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.27 -8.91 -48.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207873021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.188 kcal (2) G-P(sol) polarization free energy of solvation -39.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds