Wall clock time and date at job start Sat Apr 11 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47337 * 2 1 4 4 C 1.34772 * 120.00080 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99894 * 179.97438 * 4 3 2 7 7 C 1.50704 * 109.46725 * 180.02562 * 6 4 3 8 8 O 1.21281 * 120.00328 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99258 * 180.02562 * 7 6 4 10 10 C 1.46922 * 120.63589 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.77421 * 126.36829 * 10 9 7 12 12 C 1.53042 * 109.31489 * 54.63715 * 11 10 9 13 13 C 1.53048 * 109.53665 * 298.63586 * 12 11 10 14 14 H 1.08996 * 109.52505 * 301.39688 * 13 12 11 15 15 N 1.46895 * 109.49493 * 181.31311 * 13 12 11 16 16 C 1.46906 * 110.99789 * 155.16054 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 C 1.46931 * 120.62559 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47177 * 60.00032 * 1 2 3 30 30 H 1.08994 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47043 * 300.00341 * 1 2 3 32 32 H 1.09003 * 109.47043 * 239.99659 * 2 1 3 33 33 H 1.08999 * 109.47177 * 119.99968 * 2 1 3 34 34 H 0.97003 * 119.99596 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.46990 * 60.00558 * 6 4 3 36 36 H 1.08999 * 109.47191 * 300.00257 * 6 4 3 37 37 H 1.08993 * 109.59002 * 246.15378 * 10 9 7 38 38 H 1.09000 * 109.58230 * 6.44220 * 10 9 7 39 39 H 1.09000 * 109.50070 * 174.58758 * 11 10 9 40 40 H 1.08998 * 109.50005 * 294.65480 * 11 10 9 41 41 H 1.08991 * 109.46462 * 178.61749 * 12 11 10 42 42 H 1.08995 * 109.45688 * 58.65065 * 12 11 10 43 43 H 1.00902 * 111.00273 * 279.11577 * 15 13 12 44 44 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 45 45 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 46 46 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.58700 * 113.84496 * 28 9 7 49 49 H 1.09005 * 109.70478 * 353.48536 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3529 3.0482 0.0001 8 8 5.9592 1.9978 0.0001 9 7 6.0267 4.2154 0.0001 10 6 5.3062 5.4958 0.0006 11 6 5.8143 6.3470 1.1686 12 6 7.3357 6.4820 1.0723 13 6 7.9795 5.0969 1.1681 14 1 7.6959 4.6277 2.1102 15 7 9.4411 5.2303 1.1072 16 6 10.1013 4.0919 1.7600 17 6 11.5963 4.2632 1.6772 18 8 12.0656 5.2380 1.1287 19 7 12.4118 3.3333 2.2125 20 6 13.7719 3.4894 2.1376 21 1 14.1897 4.3573 1.6493 22 6 14.6126 2.5309 2.6901 23 7 14.1041 1.4750 3.2847 24 14 16.4656 2.7432 2.5874 25 1 16.7803 4.0068 1.8736 26 1 17.0347 2.7946 3.9581 27 1 17.0551 1.5973 1.8494 28 6 7.4959 4.2315 -0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.4821 3.5626 0.8895 36 1 3.4829 3.5616 -0.8905 37 1 5.4885 6.0181 -0.9385 38 1 4.2377 5.3137 0.1162 39 1 5.3578 7.3358 1.1238 40 1 5.5502 5.8667 2.1107 41 1 7.6972 7.1076 1.8883 42 1 7.5999 6.9401 0.1192 43 1 9.7555 5.3326 0.1538 44 1 9.7979 4.0468 2.8058 45 1 9.8135 3.1682 1.2579 46 1 12.0365 2.5539 2.6515 47 1 14.6911 0.8058 3.6700 48 1 7.8565 4.6509 -0.9396 49 1 7.8746 3.2160 0.1158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207873021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:46 Heat of formation + Delta-G solvation = -137.754264 kcal Electronic energy + Delta-G solvation = -29421.955258 eV Core-core repulsion = 25189.479182 eV Total energy + Delta-G solvation = -4232.476075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61530 -40.48261 -40.03085 -38.59543 -36.43586 -36.16540 -35.77860 -33.48416 -33.24325 -32.60193 -31.23632 -30.10270 -27.87409 -26.33380 -25.84114 -23.92892 -23.36261 -22.22959 -21.57125 -21.06658 -20.04770 -19.82402 -18.65100 -17.99923 -17.49482 -17.13585 -16.97108 -16.90217 -16.51940 -16.25864 -16.05973 -15.96932 -15.48210 -15.33691 -15.22563 -14.84042 -14.56584 -14.51728 -14.24409 -13.99646 -13.85623 -13.64970 -13.47082 -13.26732 -13.22232 -12.97208 -12.87480 -12.67100 -12.43986 -12.33331 -12.31525 -12.12385 -11.87799 -11.83867 -11.58993 -11.54720 -11.06482 -10.53564 -10.39874 -10.06791 -10.06219 -9.88634 -9.25293 -8.49564 -5.99437 1.34861 1.39611 1.55005 1.60246 1.71718 1.74920 1.99353 2.26533 2.39877 2.86902 3.16792 3.37501 3.45893 3.78052 3.81354 3.99733 4.07058 4.13054 4.18084 4.21391 4.26559 4.27649 4.30567 4.37127 4.40168 4.48343 4.53352 4.58911 4.73781 4.77824 4.85303 4.96993 4.98885 5.07316 5.16721 5.28290 5.33284 5.37187 5.39225 5.50135 5.51273 5.85706 6.04290 6.31230 6.41326 6.54858 6.62533 7.08003 7.20752 7.40128 7.50700 8.04903 8.68259 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002028 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.133142 B =13802.296431 C =15467.322375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.716 5.716 4 C 0.499 3.501 5 O -0.564 6.564 6 C -0.148 4.148 7 C 0.499 3.501 8 O -0.565 6.565 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.081 3.919 14 H 0.071 0.929 15 N -0.664 5.664 16 C 0.064 3.936 17 C 0.439 3.561 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.082 0.918 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.087 3.913 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.420 0.580 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.346 0.654 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.073 0.927 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.261 7.297 -6.040 36.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.372 5.372 4 C 0.285 3.715 5 O -0.440 6.440 6 C -0.190 4.190 7 C 0.287 3.713 8 O -0.442 6.442 9 N -0.341 5.341 10 C -0.023 4.023 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.029 4.029 14 H 0.089 0.911 15 N -0.295 5.295 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.100 0.900 22 C -0.216 4.216 23 N -0.563 5.563 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.038 4.038 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.259 0.741 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.165 0.835 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.228 0.772 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -33.944 6.947 -5.752 35.121 hybrid contribution 1.005 -1.331 -0.327 1.700 sum -32.938 5.616 -6.078 33.962 Atomic orbital electron populations 1.21932 0.91345 1.04053 1.03653 1.21311 0.96469 0.82880 1.00796 1.45881 1.06139 1.09657 1.75503 1.20745 0.82845 0.91673 0.76255 1.90888 1.56398 1.47769 1.48994 1.21695 0.91258 0.95553 1.10497 1.20934 0.91159 0.82990 0.76203 1.90874 1.70894 1.32720 1.49668 1.48196 1.05682 1.06992 1.73255 1.22221 0.98091 0.81999 0.99945 1.21929 0.93990 1.01913 0.98694 1.21500 0.95651 0.94094 1.03047 1.22037 0.86061 0.97473 0.97363 0.91062 1.60341 1.04667 1.40914 1.23563 1.21554 0.90306 0.93465 1.01544 1.20729 0.89545 0.84008 0.83037 1.90478 1.78103 1.32613 1.49348 1.41970 1.06235 1.21778 1.51073 1.19760 0.82219 1.08001 1.36461 0.89977 1.26150 1.05276 0.94546 0.95617 1.69701 1.37984 1.11050 1.37603 0.84798 0.76308 0.78357 0.78399 1.19492 1.19442 1.19646 1.22248 0.81412 1.00660 0.99499 0.90652 0.90375 0.90711 0.93391 0.93484 0.74147 0.81686 0.81558 0.89578 0.85597 0.87213 0.91468 0.91524 0.91235 0.83463 0.88186 0.92926 0.77187 0.91266 0.90858 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.03 71.98 0.72 0.06 16 2 C 0.11 1.37 6.39 86.38 0.55 1.93 16 3 N -0.72 -7.51 5.56 -463.05 -2.57 -10.08 16 4 C 0.50 9.73 7.82 87.66 0.69 10.42 16 5 O -0.56 -19.59 14.18 20.41 0.29 -19.30 16 6 C -0.15 -1.54 4.53 29.10 0.13 -1.41 16 7 C 0.50 11.69 7.69 87.66 0.67 12.37 16 8 O -0.56 -21.56 13.60 20.41 0.28 -21.28 16 9 N -0.61 -11.24 2.97 -818.82 -2.43 -13.67 16 10 C 0.10 0.71 6.34 86.36 0.55 1.26 16 11 C -0.13 -1.13 6.08 30.67 0.19 -0.94 16 12 C -0.10 -1.83 5.49 30.62 0.17 -1.66 16 13 C 0.08 2.01 2.62 45.01 0.12 2.13 16 14 H 0.07 1.89 7.80 -2.39 -0.02 1.88 16 15 N -0.66 -22.02 5.88 -495.10 -2.91 -24.93 16 16 C 0.06 2.46 5.97 85.56 0.51 2.97 16 17 C 0.44 22.31 7.82 87.66 0.69 23.00 16 18 O -0.62 -35.56 15.78 -3.08 -0.05 -35.61 16 19 N -0.57 -31.45 5.29 -306.98 -1.62 -33.07 16 20 C -0.33 -19.91 9.68 84.04 0.81 -19.09 16 21 H 0.08 5.14 7.16 -2.91 -0.02 5.12 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.92 -52.40 13.05 21.66 0.28 -52.12 16 24 Si 1.00 44.60 29.55 68.60 2.03 46.63 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C 0.09 2.19 5.69 86.37 0.49 2.69 16 29 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.42 0.47 8.47 -92.71 -0.79 -0.32 16 35 H 0.17 0.27 7.69 -2.39 -0.02 0.25 16 36 H 0.17 0.20 7.94 -2.39 -0.02 0.18 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.13 -0.13 5.93 -2.39 -0.01 -0.15 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.35 11.91 8.12 -89.69 -0.73 11.18 16 44 H 0.10 3.57 8.06 -2.39 -0.02 3.56 16 45 H 0.05 1.97 7.56 -2.38 -0.02 1.95 16 46 H 0.39 20.93 7.90 -92.71 -0.73 20.19 16 47 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.07 1.74 8.05 -2.38 -0.02 1.72 16 49 H 0.05 1.79 6.48 -2.38 -0.02 1.78 16 Total: -1.00 -94.69 399.70 -1.21 -95.90 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -1.25 Total: 34.28 kcal Atomic # 6 Polarization: 26.51 SS G_CDS: 6.75 Total: 33.27 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -9.25 Total: -133.88 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: 0.52 Total: -76.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -94.69 -1.21 -95.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207873021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.857 kcal (2) G-P(sol) polarization free energy of solvation -94.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds