Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21287 * 119.99732 * 2 1 4 4 N 1.34774 * 120.00293 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00169 * 180.02562 * 4 2 1 6 6 C 1.50700 * 109.47404 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99621 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00112 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99623 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46846 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99970 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00101 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47280 * 179.97438 * 13 12 10 15 15 C 1.53349 * 109.42091 * 295.12817 * 14 13 12 16 16 C 1.53196 * 109.15353 * 178.67328 * 15 14 13 17 17 N 1.46928 * 108.89135 * 54.57497 * 16 15 14 18 18 C 1.36936 * 120.63013 * 126.29699 * 17 16 15 19 19 H 1.07999 * 120.00022 * 331.83633 * 18 17 16 20 20 C 1.38813 * 120.00005 * 151.82709 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.09585 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.09475 * 20 18 17 23 23 H 1.48494 * 109.47083 * 60.00061 * 22 20 18 24 24 H 1.48500 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47024 * 300.00112 * 22 20 18 26 26 C 1.46924 * 118.73859 * 306.32337 * 17 16 15 27 27 C 1.53044 * 109.46279 * 174.99967 * 14 13 12 28 28 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46856 * 299.99715 * 1 2 3 30 30 H 1.08999 * 109.47139 * 59.99683 * 1 2 3 31 31 H 0.96999 * 119.99862 * 359.97438 * 4 2 1 32 32 H 1.09005 * 109.47249 * 59.99612 * 5 4 2 33 33 H 1.08998 * 109.47122 * 300.00127 * 5 4 2 34 34 H 0.96999 * 119.99865 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46866 * 60.00504 * 9 8 6 36 36 H 1.08997 * 109.47192 * 299.99739 * 9 8 6 37 37 H 0.96999 * 119.99862 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47191 * 59.99822 * 13 12 10 39 39 H 1.08998 * 109.47122 * 300.00127 * 13 12 10 40 40 H 1.09003 * 109.46065 * 55.02896 * 14 13 12 41 41 H 1.08998 * 109.68701 * 58.70817 * 15 14 13 42 42 H 1.09000 * 109.47234 * 298.50885 * 15 14 13 43 43 H 1.08996 * 109.58345 * 294.72319 * 16 15 14 44 44 H 1.08994 * 109.58644 * 174.43734 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.58664 * 173.39523 * 26 17 16 47 47 H 1.08996 * 109.58580 * 293.67452 * 26 17 16 48 48 H 1.08992 * 109.49619 * 61.43154 * 27 14 13 49 49 H 1.08999 * 109.52313 * 301.35168 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 -0.0001 7 8 3.3602 -3.5098 -0.0001 8 7 5.4734 -2.8341 -0.0001 9 6 5.9617 -4.2153 0.0003 10 6 7.4687 -4.2153 -0.0005 11 8 8.0751 -3.1649 -0.0009 12 7 8.1427 -5.3824 -0.0008 13 6 9.6076 -5.3824 -0.0010 14 6 10.1177 -6.8248 -0.0007 15 6 9.7089 -7.5099 1.3090 16 6 10.1937 -8.9630 1.2887 17 7 11.6386 -8.9787 1.0230 18 6 12.4953 -9.6385 1.8632 19 1 12.2443 -9.7561 2.9070 20 6 13.6864 -10.1564 1.3732 21 7 13.8507 -10.3161 0.0771 22 14 15.0559 -10.6268 2.5534 23 1 14.5672 -11.6727 3.4872 24 1 16.2136 -11.1505 1.7847 25 1 15.4760 -9.4303 3.3262 26 6 12.1469 -8.2726 -0.1609 27 6 11.6429 -6.8264 -0.1267 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6960 -2.0072 -0.0005 32 1 4.0089 -0.6538 0.8905 33 1 4.0095 -0.6527 -0.8894 34 1 6.1037 -2.0968 -0.0005 35 1 5.5983 -4.7294 -0.8895 36 1 5.5985 -4.7288 0.8905 37 1 7.6577 -6.2225 -0.0008 38 1 9.9711 -4.8687 0.8889 39 1 9.9708 -4.8684 -0.8909 40 1 9.6832 -7.3638 -0.8426 41 1 8.6238 -7.4899 1.4107 42 1 10.1634 -6.9865 2.1501 43 1 9.6720 -9.5113 0.5044 44 1 9.9945 -9.4281 2.2541 45 1 14.6832 -10.6777 -0.2652 46 1 13.2369 -8.2800 -0.1508 47 1 11.7866 -8.7662 -1.0634 48 1 12.0790 -6.3092 0.7279 49 1 11.9330 -6.3183 -1.0463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223638162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -99.214155 kcal Electronic energy + Delta-G solvation = -28548.463820 eV Core-core repulsion = 24317.658970 eV Total energy + Delta-G solvation = -4230.804851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.82203 -40.05507 -39.31853 -37.92110 -35.37979 -35.01288 -34.73537 -33.00727 -31.19943 -30.88881 -29.88887 -29.18831 -27.28649 -26.00041 -23.93604 -22.33296 -21.28606 -21.11563 -21.08844 -20.80952 -19.23070 -18.59119 -17.31472 -17.12484 -16.76138 -16.67284 -16.30894 -16.09548 -15.98002 -15.23217 -15.19666 -14.83974 -14.30032 -14.20699 -13.90778 -13.70330 -13.58781 -13.51192 -13.36293 -13.24458 -13.06330 -12.85301 -12.45951 -12.43249 -12.38455 -11.94171 -11.41003 -11.03262 -10.75233 -10.62048 -10.58243 -10.46138 -10.38685 -10.29092 -10.24360 -9.94912 -9.79896 -9.65039 -9.61863 -9.51426 -9.21313 -8.50259 -6.71239 -5.82775 -3.25430 1.96869 2.15026 2.15600 2.27539 2.82161 3.14581 3.35917 3.41973 3.43162 4.06917 4.34510 4.40389 4.46584 4.70461 4.73909 4.86565 4.87773 4.91024 4.94345 4.99886 5.12104 5.29154 5.32597 5.36478 5.53184 5.69217 5.75480 5.76896 5.81932 5.94386 6.03335 6.23151 6.25147 6.36806 6.53310 6.60839 6.68716 6.74444 6.87116 6.91376 6.98215 7.19993 7.32356 7.55290 7.61025 7.70340 7.75714 7.86904 8.41602 9.17799 9.81142 10.37561 11.25779 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.001438 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.044150 B =19470.405492 C =19673.615919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.513 3.487 7 O -0.539 6.539 8 N -0.711 5.711 9 C 0.099 3.901 10 C 0.505 3.495 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.123 3.877 14 C -0.091 4.091 15 C -0.128 4.128 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.171 3.829 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.416 0.584 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.254 0.746 46 H 0.088 0.912 47 H 0.018 0.982 48 H 0.058 0.942 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.090 15.720 -2.125 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.416 6.416 8 N -0.366 5.366 9 C -0.028 4.028 10 C 0.290 3.710 11 O -0.420 6.420 12 N -0.367 5.367 13 C 0.000 4.000 14 C -0.110 4.110 15 C -0.167 4.167 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.255 0.745 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.239 0.761 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.587 16.450 -2.208 28.029 hybrid contribution 0.710 -0.868 0.532 1.241 sum -21.876 15.583 -1.676 26.911 Atomic orbital electron populations 1.21834 0.90966 1.04565 1.05531 1.20874 0.90845 0.82962 0.75287 1.90752 1.70743 1.31392 1.49709 1.45876 1.05819 1.10096 1.75811 1.21027 0.82640 0.93784 1.05391 1.20485 0.82288 0.91319 0.76019 1.90721 1.55142 1.45880 1.49893 1.45574 1.07197 1.08910 1.74939 1.21118 0.91599 0.84866 1.05258 1.20408 0.89444 0.84454 0.76663 1.90713 1.69890 1.31202 1.50170 1.46007 1.08531 1.08169 1.74020 1.21658 0.77559 0.98620 1.02183 1.21383 0.97993 0.92678 0.98901 1.22142 0.98411 0.99440 0.96715 1.20884 0.86450 0.92343 0.98510 1.44029 1.00198 1.58933 1.28301 1.19142 0.99687 1.29412 0.90216 0.91791 1.25037 1.00137 0.98600 0.95731 1.70014 1.25632 1.47769 1.11317 0.86377 0.81814 0.78333 0.80289 1.20877 1.21606 1.21016 1.20761 1.00307 0.85994 0.88382 1.22175 0.92828 1.01794 1.00456 0.90295 0.88480 0.88480 0.74874 0.87955 0.87957 0.74531 0.87997 0.87947 0.76050 0.91335 0.91519 0.91194 0.93426 0.92146 0.96583 0.92873 0.93557 0.89405 0.96400 0.92359 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.39 36.01 0.37 -0.25 16 2 C 0.51 3.91 7.94 -10.99 -0.09 3.82 16 3 O -0.55 -6.51 17.10 5.55 0.09 -6.41 16 4 N -0.72 -4.77 5.53 -61.47 -0.34 -5.11 16 5 C 0.10 0.65 6.15 -5.20 -0.03 0.62 16 6 C 0.51 4.03 7.90 -10.99 -0.09 3.95 16 7 O -0.54 -5.58 15.67 5.55 0.09 -5.49 16 8 N -0.71 -5.34 5.53 -61.47 -0.34 -5.68 16 9 C 0.10 0.74 6.15 -5.19 -0.03 0.71 16 10 C 0.51 5.11 7.90 -10.99 -0.09 5.03 16 11 O -0.54 -7.29 15.67 5.56 0.09 -7.20 16 12 N -0.72 -7.01 5.27 -60.30 -0.32 -7.33 16 13 C 0.12 1.51 5.07 -4.05 -0.02 1.49 16 14 C -0.09 -1.29 2.19 -90.42 -0.20 -1.49 16 15 C -0.13 -1.93 5.27 -26.45 -0.14 -2.07 16 16 C 0.14 2.81 6.51 -3.71 -0.02 2.79 16 17 N -0.59 -14.18 2.99 -172.32 -0.52 -14.69 16 18 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 19 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 22 Si 0.90 21.30 29.59 -169.99 -5.03 16.28 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 27 C -0.13 -2.31 5.36 -26.61 -0.14 -2.46 16 28 H 0.08 0.14 7.91 -51.93 -0.41 -0.27 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.41 2.37 7.27 -40.82 -0.30 2.07 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.42 3.01 7.44 -40.82 -0.30 2.70 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.11 7.65 -40.82 -0.31 2.80 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.57 7.16 -51.93 -0.37 0.20 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -34.65 402.11 -8.21 -42.86 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.89 Total: 2.71 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.72 Total: 9.04 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.89 Total: -57.84 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.27 Total: -19.11 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.65 -8.21 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223638162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.353 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds