Wall clock time and date at job start Sat Apr 11 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21287 * 119.99732 * 2 1 4 4 N 1.34774 * 120.00293 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00169 * 180.02562 * 4 2 1 6 6 C 1.50700 * 109.47404 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99621 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00112 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99623 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46846 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99970 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00101 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00169 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47280 * 179.97438 * 13 12 10 15 15 C 1.53349 * 109.42091 * 295.12817 * 14 13 12 16 16 C 1.53196 * 109.15353 * 178.67328 * 15 14 13 17 17 N 1.46928 * 108.89135 * 54.57497 * 16 15 14 18 18 C 1.36936 * 120.63013 * 126.29699 * 17 16 15 19 19 H 1.07999 * 120.00022 * 331.83633 * 18 17 16 20 20 C 1.38813 * 120.00005 * 151.82709 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.09585 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.09475 * 20 18 17 23 23 H 1.48494 * 109.47083 * 60.00061 * 22 20 18 24 24 H 1.48500 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47024 * 300.00112 * 22 20 18 26 26 C 1.46924 * 118.73859 * 306.32337 * 17 16 15 27 27 C 1.53044 * 109.46279 * 174.99967 * 14 13 12 28 28 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46856 * 299.99715 * 1 2 3 30 30 H 1.08999 * 109.47139 * 59.99683 * 1 2 3 31 31 H 0.96999 * 119.99862 * 359.97438 * 4 2 1 32 32 H 1.09005 * 109.47249 * 59.99612 * 5 4 2 33 33 H 1.08998 * 109.47122 * 300.00127 * 5 4 2 34 34 H 0.96999 * 119.99865 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46866 * 60.00504 * 9 8 6 36 36 H 1.08997 * 109.47192 * 299.99739 * 9 8 6 37 37 H 0.96999 * 119.99862 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47191 * 59.99822 * 13 12 10 39 39 H 1.08998 * 109.47122 * 300.00127 * 13 12 10 40 40 H 1.09003 * 109.46065 * 55.02896 * 14 13 12 41 41 H 1.08998 * 109.68701 * 58.70817 * 15 14 13 42 42 H 1.09000 * 109.47234 * 298.50885 * 15 14 13 43 43 H 1.08996 * 109.58345 * 294.72319 * 16 15 14 44 44 H 1.08994 * 109.58644 * 174.43734 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.58664 * 173.39523 * 26 17 16 47 47 H 1.08996 * 109.58580 * 293.67452 * 26 17 16 48 48 H 1.08992 * 109.49619 * 61.43154 * 27 14 13 49 49 H 1.08999 * 109.52313 * 301.35168 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 -0.0001 7 8 3.3602 -3.5098 -0.0001 8 7 5.4734 -2.8341 -0.0001 9 6 5.9617 -4.2153 0.0003 10 6 7.4687 -4.2153 -0.0005 11 8 8.0751 -3.1649 -0.0009 12 7 8.1427 -5.3824 -0.0008 13 6 9.6076 -5.3824 -0.0010 14 6 10.1177 -6.8248 -0.0007 15 6 9.7089 -7.5099 1.3090 16 6 10.1937 -8.9630 1.2887 17 7 11.6386 -8.9787 1.0230 18 6 12.4953 -9.6385 1.8632 19 1 12.2443 -9.7561 2.9070 20 6 13.6864 -10.1564 1.3732 21 7 13.8507 -10.3161 0.0771 22 14 15.0559 -10.6268 2.5534 23 1 14.5672 -11.6727 3.4872 24 1 16.2136 -11.1505 1.7847 25 1 15.4760 -9.4303 3.3262 26 6 12.1469 -8.2726 -0.1609 27 6 11.6429 -6.8264 -0.1267 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6960 -2.0072 -0.0005 32 1 4.0089 -0.6538 0.8905 33 1 4.0095 -0.6527 -0.8894 34 1 6.1037 -2.0968 -0.0005 35 1 5.5983 -4.7294 -0.8895 36 1 5.5985 -4.7288 0.8905 37 1 7.6577 -6.2225 -0.0008 38 1 9.9711 -4.8687 0.8889 39 1 9.9708 -4.8684 -0.8909 40 1 9.6832 -7.3638 -0.8426 41 1 8.6238 -7.4899 1.4107 42 1 10.1634 -6.9865 2.1501 43 1 9.6720 -9.5113 0.5044 44 1 9.9945 -9.4281 2.2541 45 1 14.6832 -10.6777 -0.2652 46 1 13.2369 -8.2800 -0.1508 47 1 11.7866 -8.7662 -1.0634 48 1 12.0790 -6.3092 0.7279 49 1 11.9330 -6.3183 -1.0463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223638162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:34 Heat of formation + Delta-G solvation = -126.927815 kcal Electronic energy + Delta-G solvation = -28549.665575 eV Core-core repulsion = 24317.658970 eV Total energy + Delta-G solvation = -4232.006605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.49962 -40.81999 -40.04259 -39.30276 -36.52708 -35.76509 -35.41324 -34.52446 -32.61178 -31.61590 -31.38884 -29.96591 -28.36527 -27.00235 -25.47212 -23.82344 -22.68446 -21.80588 -21.68049 -21.63334 -20.68567 -19.28848 -18.65873 -17.96229 -17.74056 -17.30778 -17.07929 -16.86657 -16.75298 -16.65291 -15.96521 -15.87641 -15.67412 -15.30086 -15.16448 -14.88082 -14.79924 -14.40975 -14.21928 -14.06552 -14.01618 -13.80422 -13.59342 -13.28975 -13.27291 -12.98764 -12.90973 -12.79441 -12.54935 -12.27505 -12.02696 -11.83274 -11.61865 -11.32174 -11.28632 -11.10646 -11.09559 -10.99191 -10.52076 -10.41863 -10.24216 -10.09749 -8.65645 -7.86998 -5.31724 1.35777 1.46490 1.48875 1.49013 1.53806 1.55300 1.59326 2.18018 2.51600 2.52155 3.27674 3.47909 3.65504 3.72761 3.86054 3.95079 3.95841 4.10164 4.23323 4.34414 4.34657 4.36511 4.53101 4.53659 4.55787 4.68766 4.70973 4.74532 4.81785 4.95101 5.03159 5.06637 5.10415 5.15795 5.25991 5.29848 5.31170 5.36261 5.45335 5.56539 5.66823 5.80661 6.27354 6.40494 6.44182 6.47280 6.94388 7.10452 7.16538 7.16817 7.89619 8.39523 9.18809 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.001438 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.044150 B =19470.405492 C =19673.615919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.098 3.902 6 C 0.520 3.480 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.104 3.896 10 C 0.509 3.491 11 O -0.576 6.576 12 N -0.708 5.708 13 C 0.137 3.863 14 C -0.079 4.079 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.612 5.612 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.418 0.582 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.418 0.582 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.049 0.951 45 H 0.249 0.751 46 H 0.049 0.951 47 H -0.001 1.001 48 H 0.049 0.951 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.307 16.285 -1.674 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.479 6.479 4 N -0.370 5.370 5 C -0.029 4.029 6 C 0.307 3.693 7 O -0.442 6.442 8 N -0.364 5.364 9 C -0.023 4.023 10 C 0.296 3.704 11 O -0.456 6.456 12 N -0.360 5.360 13 C 0.013 3.987 14 C -0.098 4.098 15 C -0.153 4.153 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.206 1.206 26 C 0.051 3.949 27 C -0.162 4.162 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.258 0.742 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.257 0.743 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.017 0.983 48 H 0.068 0.932 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.848 16.984 -1.743 30.148 hybrid contribution 1.370 -1.088 0.387 1.791 sum -23.478 15.896 -1.356 28.386 Atomic orbital electron populations 1.21879 0.87860 1.06351 1.06226 1.21583 0.92356 0.82256 0.74024 1.90728 1.71985 1.32992 1.52158 1.45916 1.05899 1.10223 1.74973 1.21064 0.82826 0.93106 1.05916 1.20552 0.82067 0.91367 0.75328 1.90712 1.55666 1.46612 1.51224 1.45590 1.07151 1.09137 1.74511 1.21155 0.89391 0.85065 1.06645 1.20767 0.90383 0.83734 0.75523 1.90710 1.70806 1.32439 1.51688 1.45837 1.07445 1.08953 1.73762 1.21289 0.79096 0.96549 1.01762 1.21209 0.95543 0.94201 0.98834 1.21994 1.00701 0.95971 0.96670 1.21090 0.83998 0.95388 0.98273 1.44315 1.02011 1.59107 1.28144 1.19477 1.00456 1.28790 0.90772 0.91823 1.25745 1.02234 0.99365 0.97080 1.70164 1.25755 1.49192 1.12894 0.85409 0.78965 0.78092 0.78399 1.20117 1.22054 1.20610 1.20567 0.98112 0.88896 0.87336 1.21970 0.95286 0.97902 1.01047 0.87988 0.87725 0.87702 0.74187 0.87480 0.87426 0.74312 0.86483 0.86529 0.74475 0.92286 0.91620 0.90311 0.89335 0.93166 0.96369 0.93196 0.94167 0.93265 0.98338 0.93202 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.39 71.24 0.74 -0.16 16 2 C 0.51 7.25 7.94 87.66 0.70 7.95 16 3 O -0.60 -14.10 17.10 -3.05 -0.05 -14.16 16 4 N -0.71 -8.54 5.53 -466.79 -2.58 -11.12 16 5 C 0.10 1.18 6.15 85.63 0.53 1.71 16 6 C 0.52 7.24 7.90 87.66 0.69 7.93 16 7 O -0.56 -10.50 15.67 -3.05 -0.05 -10.55 16 8 N -0.71 -9.20 5.53 -466.77 -2.58 -11.78 16 9 C 0.10 1.26 6.15 85.63 0.53 1.79 16 10 C 0.51 8.96 7.90 87.66 0.69 9.66 16 11 O -0.58 -14.46 15.67 -3.04 -0.05 -14.50 16 12 N -0.71 -11.58 5.27 -463.09 -2.44 -14.03 16 13 C 0.14 3.03 5.07 86.38 0.44 3.47 16 14 C -0.08 -2.08 2.19 -10.66 -0.02 -2.10 16 15 C -0.11 -3.17 5.27 30.78 0.16 -3.01 16 16 C 0.14 5.21 6.51 86.36 0.56 5.77 16 17 N -0.61 -29.59 2.99 -699.11 -2.09 -31.68 16 18 C -0.26 -14.35 9.58 84.03 0.81 -13.54 16 19 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 20 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 21 N -0.93 -54.65 11.20 21.65 0.24 -54.41 16 22 Si 0.96 44.48 29.59 68.60 2.03 46.50 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 C 0.18 8.15 5.30 86.36 0.46 8.61 16 27 C -0.12 -4.19 5.36 30.67 0.16 -4.02 16 28 H 0.10 0.08 7.91 -2.39 -0.02 0.06 16 29 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.42 4.09 7.27 -92.71 -0.67 3.42 16 32 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.42 5.39 7.44 -92.71 -0.69 4.70 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.42 4.71 7.65 -92.71 -0.71 4.00 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 1.76 7.16 -2.39 -0.02 1.74 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.05 2.64 6.06 -2.39 -0.01 2.62 16 47 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.06 402.11 -1.80 -78.86 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -1.09 Total: 15.09 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.86 Total: 21.76 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -9.45 Total: -123.01 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.15 Total: -39.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -77.06 -1.80 -78.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223638162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.066 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds