Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 119.99845 * 2 1 4 4 N 1.34774 * 120.00341 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00200 * 184.48843 * 4 2 1 6 6 C 1.46499 * 119.99882 * 4.48861 * 4 2 1 7 7 C 1.50707 * 109.46802 * 89.99935 * 6 4 2 8 8 O 1.21280 * 120.00098 * 359.97438 * 7 6 4 9 9 N 1.34782 * 119.99698 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99727 * 180.02562 * 9 7 6 11 11 C 1.53121 * 109.52226 * 204.99941 * 10 9 7 12 12 C 1.53032 * 109.27831 * 182.37633 * 11 10 9 13 13 N 1.46846 * 109.52400 * 59.17761 * 12 11 10 14 14 C 1.46902 * 111.00142 * 174.15913 * 13 12 11 15 15 C 1.50701 * 109.47360 * 293.19717 * 14 13 12 16 16 O 1.21297 * 119.99464 * 353.49969 * 15 14 13 17 17 N 1.34769 * 120.00003 * 173.50508 * 15 14 13 18 18 C 1.37103 * 119.99553 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00364 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99697 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47134 * 89.99895 * 22 20 18 24 24 H 1.48502 * 109.47027 * 209.99723 * 22 20 18 25 25 H 1.48496 * 109.47177 * 330.00149 * 22 20 18 26 26 C 1.46852 * 111.19694 * 298.25623 * 13 12 11 27 27 C 1.53035 * 109.52279 * 61.74726 * 26 13 12 28 28 H 1.09003 * 109.47695 * 273.09543 * 1 2 3 29 29 H 1.09005 * 109.47406 * 33.09810 * 1 2 3 30 30 H 1.09003 * 109.47168 * 153.09394 * 1 2 3 31 31 H 1.09000 * 109.47605 * 265.35212 * 5 4 2 32 32 H 1.08998 * 109.47262 * 25.35592 * 5 4 2 33 33 H 1.09004 * 109.47022 * 145.35255 * 5 4 2 34 34 H 1.09001 * 109.47438 * 330.00351 * 6 4 2 35 35 H 1.08996 * 109.47844 * 209.99588 * 6 4 2 36 36 H 0.97001 * 120.00394 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.51970 * 325.12069 * 10 9 7 38 38 H 1.08996 * 109.50708 * 62.42992 * 11 10 9 39 39 H 1.09005 * 109.49922 * 302.31567 * 11 10 9 40 40 H 1.08998 * 109.46414 * 299.16120 * 12 11 10 41 41 H 1.08998 * 109.45472 * 179.18367 * 12 11 10 42 42 H 1.09002 * 109.47291 * 173.19164 * 14 13 12 43 43 H 1.08997 * 109.46630 * 53.19543 * 14 13 12 44 44 H 0.96995 * 120.00437 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.45914 * 181.75647 * 26 13 12 47 47 H 1.08992 * 109.46106 * 301.72355 * 26 13 12 48 48 H 1.09000 * 109.50421 * 180.88439 * 27 26 13 49 49 H 1.08992 * 109.50714 * 60.75540 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6425 -1.1690 0.0998 6 6 1.4518 -2.4340 -0.0982 7 6 1.2981 -2.8133 -1.5486 8 8 1.7524 -2.0959 -2.4145 9 7 0.6549 -3.9494 -1.8835 10 6 0.5060 -4.3185 -3.2934 11 6 -0.7172 -5.2246 -3.4587 12 6 -0.8332 -5.6547 -4.9228 13 7 0.3855 -6.3698 -5.3223 14 6 0.2536 -6.9181 -6.6787 15 6 -0.7954 -8.0001 -6.6834 16 8 -1.2915 -8.3683 -5.6396 17 7 -1.1822 -8.5585 -7.8474 18 6 -2.1369 -9.5425 -7.8516 19 1 -2.5787 -9.8704 -6.9223 20 6 -2.5361 -10.1180 -9.0518 21 7 -1.9989 -9.7188 -10.1826 22 14 -3.8363 -11.4592 -9.0575 23 1 -5.1813 -10.8441 -9.1916 24 1 -3.5957 -12.3770 -10.1998 25 1 -3.7658 -12.2225 -7.7857 26 6 1.5674 -5.5046 -5.2170 27 6 1.7552 -5.0701 -3.7617 28 1 -0.3634 0.0555 1.0262 29 1 -0.3634 0.8609 -0.5612 30 1 -0.3634 -0.9164 -0.4651 31 1 4.0746 -1.2130 -0.8999 32 1 3.9739 -0.2585 0.5991 33 1 3.9665 -2.0369 0.6742 34 1 0.4665 -2.3225 0.3545 35 1 2.0057 -3.2138 0.4245 36 1 0.2912 -4.5231 -1.1910 37 1 0.3761 -3.4181 -3.8938 38 1 -1.6154 -4.6803 -3.1670 39 1 -0.6046 -6.1066 -2.8281 40 1 -0.9596 -4.7732 -5.5514 41 1 -1.6949 -6.3116 -5.0410 42 1 1.2087 -7.3366 -6.9960 43 1 -0.0408 -6.1237 -7.3646 44 1 -0.7857 -8.2639 -8.6821 45 1 -2.2779 -10.1203 -11.0204 46 1 2.4493 -6.0526 -5.5490 47 1 1.4298 -4.6239 -5.8442 48 1 2.6233 -4.4153 -3.6865 49 1 1.9066 -5.9496 -3.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -95.952292 kcal Electronic energy + Delta-G solvation = -29629.474837 eV Core-core repulsion = 25398.811431 eV Total energy + Delta-G solvation = -4230.663406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76392 -39.73836 -38.86741 -37.59648 -35.79808 -35.03075 -33.87339 -31.98357 -31.20494 -30.89426 -30.79553 -28.88990 -27.04060 -26.08703 -24.54211 -23.23821 -22.76664 -21.03753 -20.18503 -19.48811 -19.18495 -17.88220 -17.68729 -17.54100 -16.89517 -16.15439 -15.99349 -15.70266 -15.29617 -15.14466 -14.98631 -14.58539 -14.14748 -13.95621 -13.89434 -13.76063 -13.55007 -13.46631 -13.34086 -13.06340 -13.05125 -12.77743 -12.37373 -12.32717 -12.21185 -11.92915 -11.65204 -11.48170 -11.31885 -11.16438 -11.06221 -10.85251 -10.51360 -10.41065 -10.37798 -10.24195 -10.22922 -9.49444 -9.28168 -9.09806 -8.46277 -7.98951 -7.88519 -6.43052 -3.83929 2.13260 2.24504 2.48646 2.97956 3.16110 3.25001 3.30542 3.89575 3.95148 4.12349 4.22190 4.31936 4.39865 4.61439 4.70958 4.75510 4.76822 4.94635 4.98928 5.03459 5.07441 5.22401 5.23384 5.26482 5.41359 5.42800 5.45200 5.52754 5.59679 5.65219 5.76941 5.82641 5.91806 5.95274 5.97120 6.06192 6.15472 6.27636 6.33107 6.36242 6.83736 7.17234 7.25722 7.37499 7.53600 7.75124 7.89244 8.05041 8.60545 9.16749 9.53512 10.05145 10.74673 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.001741 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.707286 B =16081.380669 C =16355.204480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.520 3.480 3 O -0.541 6.541 4 N -0.601 5.601 5 C 0.085 3.915 6 C 0.088 3.912 7 C 0.487 3.513 8 O -0.526 6.526 9 N -0.722 5.722 10 C 0.143 3.857 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.057 3.943 27 C -0.121 4.121 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.401 0.599 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.025 0.975 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.031 0.969 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 13.615 19.391 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.309 3.691 3 O -0.418 6.418 4 N -0.335 5.335 5 C -0.058 4.058 6 C -0.039 4.039 7 C 0.271 3.729 8 O -0.401 6.401 9 N -0.374 5.374 10 C 0.039 3.961 11 C -0.156 4.156 12 C -0.069 4.069 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.071 4.071 27 C -0.160 4.160 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.236 0.764 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.123 14.021 19.596 25.126 hybrid contribution -0.622 -0.359 -1.056 1.277 sum 6.500 13.662 18.539 23.930 Atomic orbital electron populations 1.21965 0.91730 1.05100 1.04771 1.20768 0.90654 0.82872 0.74786 1.90717 1.70773 1.30877 1.49404 1.47421 1.07587 1.05169 1.73305 1.21689 0.78763 1.03019 1.02279 1.21554 1.00206 0.87953 0.94211 1.21269 0.78448 0.81258 0.91937 1.90762 1.47245 1.51226 1.50859 1.46140 1.58118 1.23945 1.09181 1.21138 0.95783 0.98106 0.81054 1.21824 0.96236 0.99158 0.98391 1.22101 0.94539 0.96545 0.93734 1.61523 1.02570 1.35297 1.24590 1.21850 1.00307 0.97171 0.89205 1.19745 0.86407 0.86204 0.84773 1.90496 1.58863 1.65265 1.31537 1.41887 1.36623 1.34522 1.07140 1.19688 1.15304 1.13017 0.94818 0.87919 1.25265 0.98889 0.99099 0.94738 1.69612 1.43305 1.43346 0.98029 0.85861 0.80281 0.80215 0.77946 1.20457 1.20943 1.19427 1.22052 0.94121 0.95134 0.95827 1.21914 0.97418 1.00069 0.96608 0.88531 0.88604 0.90381 0.92233 0.90167 0.91352 0.86900 0.86936 0.76445 0.89807 0.91209 0.90138 0.95655 0.87988 0.89244 0.93527 0.77504 0.91879 0.90468 0.95035 0.91432 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.49 36.00 0.34 -0.77 16 2 C 0.52 5.32 7.77 -10.99 -0.09 5.23 16 3 O -0.54 -7.82 16.65 5.56 0.09 -7.72 16 4 N -0.60 -4.93 2.36 -182.96 -0.43 -5.36 16 5 C 0.08 0.65 10.50 59.84 0.63 1.28 16 6 C 0.09 0.44 5.55 -5.19 -0.03 0.41 16 7 C 0.49 4.16 7.61 -10.98 -0.08 4.08 16 8 O -0.53 -7.08 16.09 5.56 0.09 -6.99 16 9 N -0.72 -5.30 5.08 -53.68 -0.27 -5.57 16 10 C 0.14 1.48 2.52 -67.80 -0.17 1.31 16 11 C -0.12 -1.31 5.57 -26.65 -0.15 -1.46 16 12 C 0.06 0.88 5.12 -3.84 -0.02 0.86 16 13 N -0.52 -8.11 4.34 -236.12 -1.02 -9.13 16 14 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 15 C 0.44 10.13 7.31 -10.99 -0.08 10.05 16 16 O -0.58 -14.95 14.33 5.54 0.08 -14.87 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 22 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 26 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 27 C -0.12 -1.34 5.68 -26.65 -0.15 -1.49 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.39 6.04 -51.93 -0.31 0.08 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 7.35 -51.93 -0.38 0.29 16 33 H 0.07 0.32 7.96 -51.93 -0.41 -0.10 16 34 H 0.11 0.24 6.26 -51.93 -0.33 -0.08 16 35 H 0.11 0.25 7.94 -51.93 -0.41 -0.16 16 36 H 0.40 1.75 8.61 -40.82 -0.35 1.40 16 37 H 0.08 1.03 7.58 -51.93 -0.39 0.64 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 1.86 6.10 -51.93 -0.32 1.55 16 42 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 43 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -36.50 399.83 -7.68 -44.18 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.80 Total: 8.22 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.09 Total: 13.13 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -1.06 Total: -57.68 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.26 Total: -29.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.50 -7.68 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.773 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds