Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 119.99845 * 2 1 4 4 N 1.34774 * 120.00341 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00200 * 184.48843 * 4 2 1 6 6 C 1.46499 * 119.99882 * 4.48861 * 4 2 1 7 7 C 1.50707 * 109.46802 * 89.99935 * 6 4 2 8 8 O 1.21280 * 120.00098 * 359.97438 * 7 6 4 9 9 N 1.34782 * 119.99698 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99727 * 180.02562 * 9 7 6 11 11 C 1.53121 * 109.52226 * 204.99941 * 10 9 7 12 12 C 1.53032 * 109.27831 * 182.37633 * 11 10 9 13 13 N 1.46846 * 109.52400 * 59.17761 * 12 11 10 14 14 C 1.46902 * 111.00142 * 174.15913 * 13 12 11 15 15 C 1.50701 * 109.47360 * 293.19717 * 14 13 12 16 16 O 1.21297 * 119.99464 * 353.49969 * 15 14 13 17 17 N 1.34769 * 120.00003 * 173.50508 * 15 14 13 18 18 C 1.37103 * 119.99553 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00364 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99697 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47134 * 89.99895 * 22 20 18 24 24 H 1.48502 * 109.47027 * 209.99723 * 22 20 18 25 25 H 1.48496 * 109.47177 * 330.00149 * 22 20 18 26 26 C 1.46852 * 111.19694 * 298.25623 * 13 12 11 27 27 C 1.53035 * 109.52279 * 61.74726 * 26 13 12 28 28 H 1.09003 * 109.47695 * 273.09543 * 1 2 3 29 29 H 1.09005 * 109.47406 * 33.09810 * 1 2 3 30 30 H 1.09003 * 109.47168 * 153.09394 * 1 2 3 31 31 H 1.09000 * 109.47605 * 265.35212 * 5 4 2 32 32 H 1.08998 * 109.47262 * 25.35592 * 5 4 2 33 33 H 1.09004 * 109.47022 * 145.35255 * 5 4 2 34 34 H 1.09001 * 109.47438 * 330.00351 * 6 4 2 35 35 H 1.08996 * 109.47844 * 209.99588 * 6 4 2 36 36 H 0.97001 * 120.00394 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.51970 * 325.12069 * 10 9 7 38 38 H 1.08996 * 109.50708 * 62.42992 * 11 10 9 39 39 H 1.09005 * 109.49922 * 302.31567 * 11 10 9 40 40 H 1.08998 * 109.46414 * 299.16120 * 12 11 10 41 41 H 1.08998 * 109.45472 * 179.18367 * 12 11 10 42 42 H 1.09002 * 109.47291 * 173.19164 * 14 13 12 43 43 H 1.08997 * 109.46630 * 53.19543 * 14 13 12 44 44 H 0.96995 * 120.00437 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.45914 * 181.75647 * 26 13 12 47 47 H 1.08992 * 109.46106 * 301.72355 * 26 13 12 48 48 H 1.09000 * 109.50421 * 180.88439 * 27 26 13 49 49 H 1.08992 * 109.50714 * 60.75540 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6425 -1.1690 0.0998 6 6 1.4518 -2.4340 -0.0982 7 6 1.2981 -2.8133 -1.5486 8 8 1.7524 -2.0959 -2.4145 9 7 0.6549 -3.9494 -1.8835 10 6 0.5060 -4.3185 -3.2934 11 6 -0.7172 -5.2246 -3.4587 12 6 -0.8332 -5.6547 -4.9228 13 7 0.3855 -6.3698 -5.3223 14 6 0.2536 -6.9181 -6.6787 15 6 -0.7954 -8.0001 -6.6834 16 8 -1.2915 -8.3683 -5.6396 17 7 -1.1822 -8.5585 -7.8474 18 6 -2.1369 -9.5425 -7.8516 19 1 -2.5787 -9.8704 -6.9223 20 6 -2.5361 -10.1180 -9.0518 21 7 -1.9989 -9.7188 -10.1826 22 14 -3.8363 -11.4592 -9.0575 23 1 -5.1813 -10.8441 -9.1916 24 1 -3.5957 -12.3770 -10.1998 25 1 -3.7658 -12.2225 -7.7857 26 6 1.5674 -5.5046 -5.2170 27 6 1.7552 -5.0701 -3.7617 28 1 -0.3634 0.0555 1.0262 29 1 -0.3634 0.8609 -0.5612 30 1 -0.3634 -0.9164 -0.4651 31 1 4.0746 -1.2130 -0.8999 32 1 3.9739 -0.2585 0.5991 33 1 3.9665 -2.0369 0.6742 34 1 0.4665 -2.3225 0.3545 35 1 2.0057 -3.2138 0.4245 36 1 0.2912 -4.5231 -1.1910 37 1 0.3761 -3.4181 -3.8938 38 1 -1.6154 -4.6803 -3.1670 39 1 -0.6046 -6.1066 -2.8281 40 1 -0.9596 -4.7732 -5.5514 41 1 -1.6949 -6.3116 -5.0410 42 1 1.2087 -7.3366 -6.9960 43 1 -0.0408 -6.1237 -7.3646 44 1 -0.7857 -8.2639 -8.6821 45 1 -2.2779 -10.1203 -11.0204 46 1 2.4493 -6.0526 -5.5490 47 1 1.4298 -4.6239 -5.8442 48 1 2.6233 -4.4153 -3.6865 49 1 1.9066 -5.9496 -3.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226152995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -125.324178 kcal Electronic energy + Delta-G solvation = -29630.748497 eV Core-core repulsion = 25398.811431 eV Total energy + Delta-G solvation = -4231.937066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.48593 -40.73747 -40.12191 -38.99089 -36.59159 -36.10069 -35.68827 -33.31982 -32.82806 -31.82452 -31.47126 -29.64266 -28.34277 -26.78727 -26.19742 -24.30604 -23.84792 -21.79490 -21.14040 -20.95834 -20.18544 -19.85178 -18.35556 -18.19543 -17.77357 -17.54794 -16.95281 -16.61238 -16.50088 -16.33330 -16.12562 -15.98361 -15.53710 -15.32160 -15.08996 -14.70588 -14.52374 -14.44757 -14.12169 -14.00733 -13.86715 -13.58130 -13.48051 -13.34522 -13.18909 -12.98150 -12.93625 -12.71472 -12.66714 -12.43098 -12.36662 -12.17359 -12.10836 -11.80645 -11.60213 -11.38610 -11.19039 -11.01931 -10.26571 -10.05233 -9.97623 -9.77492 -9.21098 -8.44502 -5.92940 1.39196 1.42852 1.42951 1.55605 1.61335 1.90536 2.08104 2.29396 2.34381 2.75440 3.22581 3.40229 3.58568 3.68476 3.86446 3.87321 4.06951 4.11222 4.20024 4.24686 4.31208 4.36787 4.38657 4.46353 4.47687 4.54001 4.55532 4.56304 4.63949 4.67010 4.72813 4.90260 4.93368 4.98456 4.99672 5.06304 5.14724 5.31505 5.36080 5.42987 5.52050 5.89592 6.09610 6.20965 6.22546 6.61398 6.62878 7.05841 7.15216 7.29324 7.59362 8.14606 8.72957 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.001741 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.707286 B =16081.380669 C =16355.204480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.598 6.598 4 N -0.602 5.602 5 C 0.082 3.918 6 C 0.090 3.910 7 C 0.488 3.512 8 O -0.580 6.580 9 N -0.707 5.707 10 C 0.153 3.847 11 C -0.105 4.105 12 C 0.057 3.943 13 N -0.528 5.528 14 C 0.056 3.944 15 C 0.444 3.556 16 O -0.610 6.610 17 N -0.577 5.577 18 C -0.329 4.329 19 H 0.081 0.919 20 C -0.016 4.016 21 N -0.923 5.923 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.058 3.942 27 C -0.113 4.113 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.420 0.580 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.395 0.605 45 H 0.276 0.724 46 H 0.086 0.914 47 H 0.033 0.967 48 H 0.067 0.933 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 12.947 21.075 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.333 5.333 5 C -0.060 4.060 6 C -0.036 4.036 7 C 0.274 3.726 8 O -0.459 6.459 9 N -0.359 5.359 10 C 0.048 3.952 11 C -0.143 4.143 12 C -0.071 4.071 13 N -0.253 5.253 14 C -0.075 4.075 15 C 0.231 3.769 16 O -0.496 6.496 17 N -0.214 5.214 18 C -0.459 4.459 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.070 4.070 27 C -0.152 4.152 28 H 0.144 0.856 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.258 0.742 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.228 0.772 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.052 0.948 48 H 0.085 0.915 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.811 13.311 21.307 26.030 hybrid contribution -0.493 -0.154 -1.564 1.647 sum 6.318 13.157 19.743 24.552 Atomic orbital electron populations 1.21992 0.88765 1.05523 1.06663 1.21558 0.92289 0.82650 0.73756 1.90684 1.72107 1.32942 1.52144 1.47580 1.07896 1.05948 1.71884 1.21728 0.78881 1.03997 1.01395 1.21901 1.02535 0.87325 0.91849 1.21918 0.77162 0.80501 0.93052 1.90760 1.49538 1.52887 1.52697 1.45924 1.57658 1.24000 1.08350 1.20818 0.94914 0.96868 0.82648 1.21696 0.97539 0.99435 0.95678 1.22046 0.92987 0.95609 0.96456 1.61528 1.03812 1.36575 1.23387 1.21733 0.99041 0.95834 0.90938 1.20697 0.86346 0.86255 0.83607 1.90467 1.60082 1.66408 1.32593 1.41966 1.36819 1.34743 1.07914 1.19663 1.16948 1.14764 0.94516 0.90089 1.26046 1.00533 1.00831 0.94088 1.69679 1.44117 1.44150 0.98428 0.84924 0.77856 0.77572 0.77974 1.19718 1.19789 1.19617 1.22125 0.92971 0.94768 0.97165 1.21834 0.97705 1.00127 0.95538 0.85619 0.89584 0.88664 0.94409 0.91667 0.87654 0.83185 0.83064 0.74232 0.91647 0.89425 0.90171 0.95293 0.91824 0.87268 0.92042 0.77183 0.91426 0.89552 0.94839 0.91471 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.49 71.23 0.68 -1.11 16 2 C 0.51 9.96 7.77 87.66 0.68 10.64 16 3 O -0.60 -17.86 16.65 -3.04 -0.05 -17.91 16 4 N -0.60 -8.74 2.36 -851.15 -2.01 -10.75 16 5 C 0.08 1.18 10.50 127.77 1.34 2.52 16 6 C 0.09 0.53 5.55 85.64 0.48 1.01 16 7 C 0.49 7.03 7.61 87.66 0.67 7.70 16 8 O -0.58 -15.06 16.09 -3.03 -0.05 -15.11 16 9 N -0.71 -8.16 5.08 -442.12 -2.25 -10.41 16 10 C 0.15 2.85 2.52 45.07 0.11 2.97 16 11 C -0.11 -2.17 5.57 30.65 0.17 -2.00 16 12 C 0.06 1.69 5.12 86.32 0.44 2.13 16 13 N -0.53 -16.15 4.34 -900.93 -3.91 -20.06 16 14 C 0.06 1.90 5.45 85.56 0.47 2.37 16 15 C 0.44 20.58 7.31 87.66 0.64 21.22 16 16 O -0.61 -32.30 14.33 -3.08 -0.04 -32.34 16 17 N -0.58 -29.19 5.29 -306.98 -1.62 -30.82 16 18 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 21 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 22 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.06 1.37 5.46 86.32 0.47 1.85 16 27 C -0.11 -2.29 5.68 30.65 0.17 -2.12 16 28 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 0.64 6.04 -2.39 -0.01 0.63 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.13 7.35 -2.39 -0.02 1.11 16 33 H 0.11 0.68 7.96 -2.38 -0.02 0.66 16 34 H 0.15 -0.16 6.26 -2.39 -0.01 -0.18 16 35 H 0.15 -0.17 7.94 -2.39 -0.02 -0.19 16 36 H 0.42 1.91 8.61 -92.71 -0.80 1.11 16 37 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 2.38 6.10 -2.39 -0.01 2.36 16 42 H 0.11 3.30 7.97 -2.39 -0.02 3.28 16 43 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 44 H 0.39 19.15 7.90 -92.71 -0.73 18.41 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.17 16 46 H 0.09 1.90 8.00 -2.38 -0.02 1.88 16 47 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -83.90 399.83 -0.57 -84.47 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.55 Total: 28.58 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.60 Total: 29.23 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -9.51 Total: -121.35 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -0.14 Total: -65.36 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -83.90 -0.57 -84.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.855 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds