Wall clock time and date at job start Sat Apr 11 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47033 * 2 1 4 4 C 1.46508 * 120.00224 * 270.00255 * 3 2 1 5 5 C 1.50701 * 109.47001 * 270.00422 * 4 3 2 6 6 H 1.08001 * 120.00114 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99954 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86811 * 119.99930 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46731 * 59.99651 * 9 7 5 11 11 H 1.48500 * 109.47075 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46836 * 299.99655 * 9 7 5 13 13 C 1.34776 * 120.00298 * 89.99822 * 3 2 1 14 14 O 1.21278 * 120.00439 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99762 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47406 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00237 * 179.97438 * 16 15 13 18 18 H 1.08993 * 112.84928 * 23.80518 * 17 16 15 19 19 C 1.53781 * 113.61280 * 155.00091 * 17 16 15 20 20 C 1.53784 * 87.08164 * 140.06305 * 19 17 16 21 21 H 1.09002 * 113.61006 * 89.19565 * 20 19 17 22 22 C 1.52996 * 113.61693 * 220.01606 * 20 19 17 23 23 N 1.46498 * 109.47059 * 184.99831 * 22 20 19 24 24 C 1.34777 * 119.99828 * 179.72339 * 23 22 20 25 25 O 1.21353 * 120.00267 * 0.28147 * 24 23 22 26 26 C 1.49445 * 120.00114 * 180.27895 * 24 23 22 27 27 N 1.34777 * 120.00110 * 180.02562 * 26 24 23 28 28 O 1.21353 * 120.00086 * 359.97438 * 26 24 23 29 29 C 1.53779 * 113.68857 * 252.53391 * 17 16 15 30 30 H 1.09002 * 109.46842 * 300.00131 * 1 2 3 31 31 H 1.09001 * 109.47588 * 59.99965 * 1 2 3 32 32 H 1.08998 * 109.47128 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46842 * 239.99869 * 2 1 3 34 34 H 1.08992 * 109.47421 * 120.00013 * 2 1 3 35 35 H 1.09007 * 109.46950 * 29.99546 * 4 3 2 36 36 H 1.08995 * 109.47598 * 149.99815 * 4 3 2 37 37 H 0.96999 * 120.00144 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.47203 * 59.99862 * 15 13 3 39 39 H 1.09001 * 109.47150 * 299.99546 * 15 13 3 40 40 H 1.00908 * 110.99934 * 303.95407 * 16 15 13 41 41 H 1.08997 * 113.61825 * 25.51521 * 19 17 16 42 42 H 1.09003 * 113.68996 * 254.62112 * 19 17 16 43 43 H 1.09004 * 109.47066 * 65.00099 * 22 20 19 44 44 H 1.08994 * 109.46974 * 305.00247 * 22 20 19 45 45 H 0.97001 * 120.00384 * 0.02562 * 23 22 20 46 46 H 0.97000 * 120.00327 * 359.97438 * 27 26 24 47 47 H 0.97008 * 120.00332 * 179.97438 * 27 26 24 48 48 H 1.09004 * 113.61558 * 105.46182 * 29 17 16 49 49 H 1.08990 * 113.61965 * 334.55676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3428 1.2308 -1.0960 7 6 4.1492 2.3905 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9137 2.0975 -3.4165 10 1 6.1415 0.6409 -3.5944 11 1 6.1612 2.7975 -4.7026 12 1 6.8409 2.6207 -2.3812 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 7 2.3109 2.2059 3.5888 17 6 2.0774 1.5456 4.8801 18 1 2.1227 0.4587 4.8140 19 6 2.9154 2.1284 6.0303 20 6 1.6678 1.9694 6.9152 21 1 1.6019 0.9987 7.4066 22 6 1.4454 3.1384 7.8768 23 7 0.3098 2.8406 8.7532 24 6 -0.0691 3.7311 9.6912 25 8 0.5271 4.7817 9.8066 26 6 -1.2236 3.4247 10.5893 27 7 -1.6029 4.3154 11.5271 28 8 -1.8202 2.3743 10.4737 29 6 0.8368 2.0664 5.6249 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5816 1.6877 -2.0285 36 1 2.0954 3.1411 -1.1385 37 1 3.6753 3.5172 -4.4435 38 1 2.6228 0.4188 2.5298 39 1 0.9444 1.0115 2.5302 40 1 3.2592 2.5440 3.5215 41 1 3.2103 3.1660 5.8737 42 1 3.7481 1.4926 6.3313 43 1 1.2365 4.0435 7.3064 44 1 2.3407 3.2879 8.4803 45 1 -0.1666 2.0007 8.6612 46 1 -1.1263 5.1551 11.6193 47 1 -2.3525 4.1166 12.1098 48 1 -0.0091 1.3795 5.5977 49 1 0.5634 3.0870 5.3574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263842005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:24 Heat of formation + Delta-G solvation = -118.018337 kcal Electronic energy + Delta-G solvation = -28804.210306 eV Core-core repulsion = 24572.590044 eV Total energy + Delta-G solvation = -4231.620261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65310 -40.82440 -40.12922 -39.30972 -36.96891 -36.31483 -35.07836 -34.73834 -34.28789 -31.60230 -30.02494 -29.08588 -27.21401 -26.56935 -25.44598 -24.62501 -23.84449 -22.45944 -21.58789 -20.58386 -19.83201 -19.52506 -18.60899 -18.31628 -17.86214 -17.30320 -17.11891 -17.03433 -16.94803 -16.60134 -16.36238 -15.98435 -15.56858 -15.30684 -15.05927 -14.91393 -14.66652 -14.60833 -14.30042 -14.12550 -13.64655 -13.47422 -13.28355 -13.23404 -13.08767 -12.91432 -12.88109 -12.63589 -12.51297 -12.38623 -12.13710 -11.86993 -11.80990 -11.72999 -11.61966 -11.16380 -10.90939 -10.80889 -10.63992 -10.50489 -10.26601 -9.41236 -9.30977 -8.21524 -6.36985 0.32348 1.36277 1.40757 1.46630 1.48089 1.89313 2.12738 2.27747 2.43670 2.87892 3.07508 3.27284 3.55941 3.60264 3.74447 3.75819 3.92757 3.97115 4.12058 4.27140 4.35474 4.41888 4.45874 4.50542 4.67531 4.70310 4.81572 4.93750 4.95043 4.98835 5.00595 5.06560 5.09892 5.17767 5.23098 5.32832 5.40454 5.48501 5.53396 5.58790 5.87550 5.91367 6.07318 6.13697 6.28484 6.38035 6.71386 6.79014 6.86022 7.00803 7.29488 7.54863 8.85156 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.001687 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.599820 B =16591.553217 C =17117.681569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.492 3.508 14 O -0.589 6.589 15 C 0.059 3.941 16 N -0.680 5.680 17 C 0.056 3.944 18 H 0.094 0.906 19 C -0.128 4.128 20 C -0.107 4.107 21 H 0.122 0.878 22 C 0.130 3.870 23 N -0.685 5.685 24 C 0.501 3.499 25 O -0.548 6.548 26 C 0.516 3.484 27 N -0.802 5.802 28 O -0.550 6.550 29 C -0.123 4.123 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.344 0.656 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.421 0.579 46 H 0.422 0.578 47 H 0.423 0.577 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 -7.983 29.487 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.280 3.720 14 O -0.469 6.469 15 C -0.073 4.073 16 N -0.313 5.313 17 C -0.053 4.053 18 H 0.112 0.888 19 C -0.167 4.167 20 C -0.126 4.126 21 H 0.140 0.860 22 C 0.007 3.993 23 N -0.338 5.338 24 C 0.281 3.719 25 O -0.426 6.426 26 C 0.294 3.706 27 N -0.369 5.369 28 O -0.428 6.428 29 C -0.162 4.162 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.258 0.742 46 H 0.254 0.746 47 H 0.257 0.743 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.515 -6.958 29.144 31.150 hybrid contribution 1.201 -0.072 -0.747 1.416 sum -7.314 -7.029 28.397 30.155 Atomic orbital electron populations 1.22155 0.94724 1.03451 1.01584 1.21736 0.95205 0.81345 1.03903 1.48292 1.64128 1.15095 1.06195 1.18657 0.95231 0.91387 0.80581 1.21696 0.97883 1.32055 1.06570 0.92733 1.25892 1.02480 0.94464 0.96457 1.70054 1.37865 1.34154 1.14781 0.85453 0.78908 0.79026 0.77315 1.18372 1.20443 1.20294 1.21380 0.77283 0.86674 0.86620 1.90637 1.47735 1.20585 1.87952 1.21864 1.04042 0.94185 0.87161 1.60273 1.32020 1.37975 1.01026 1.23171 0.98097 0.97617 0.86436 0.88794 1.23170 0.96817 1.02252 0.94433 1.22577 0.97409 0.98982 0.93602 0.85984 1.21533 0.88000 0.98335 0.91440 1.45795 1.33273 1.21507 1.33185 1.20265 0.84942 0.84405 0.82296 1.90784 1.55833 1.25255 1.70714 1.20024 0.84251 0.84249 0.82049 1.43449 1.36531 1.21752 1.35148 1.90820 1.55778 1.25532 1.70703 1.23180 0.96960 1.01910 0.94134 0.92145 0.94567 0.88562 0.91119 0.88007 0.96269 0.98908 0.92458 0.90242 0.86514 0.83633 0.90038 0.89442 0.91834 0.90504 0.74154 0.74580 0.74268 0.90331 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.61 -25.57 2.46 -826.16 -2.03 -27.60 16 4 C 0.26 14.45 5.16 85.63 0.44 14.89 16 5 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.49 20.36 7.71 87.66 0.68 21.03 16 14 O -0.59 -31.02 15.78 -3.02 -0.05 -31.07 16 15 C 0.06 1.59 4.56 85.56 0.39 1.98 16 16 N -0.68 -17.63 6.19 -492.87 -3.05 -20.68 16 17 C 0.06 0.92 4.14 45.44 0.19 1.11 16 18 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 19 C -0.13 -1.72 7.21 31.12 0.22 -1.49 16 20 C -0.11 -1.14 3.75 -10.27 -0.04 -1.18 16 21 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 22 C 0.13 1.76 5.51 86.38 0.48 2.23 16 23 N -0.68 -9.19 5.55 -464.42 -2.58 -11.77 16 24 C 0.50 8.35 7.89 87.27 0.69 9.04 16 25 O -0.55 -11.82 16.48 -3.26 -0.05 -11.88 16 26 C 0.52 7.52 8.16 87.27 0.71 8.24 16 27 N -0.80 -6.00 8.87 -174.50 -1.55 -7.55 16 28 O -0.55 -10.72 17.31 -3.26 -0.06 -10.77 16 29 C -0.12 -1.85 7.43 31.12 0.23 -1.62 16 30 H 0.06 1.36 7.22 -2.39 -0.02 1.35 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 35 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 36 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.08 1.71 7.39 -2.39 -0.02 1.69 16 39 H 0.12 2.60 7.19 -2.39 -0.02 2.58 16 40 H 0.34 9.91 8.25 -89.69 -0.74 9.17 16 41 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.10 7.84 -2.38 -0.02 1.08 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.42 4.47 7.94 -92.71 -0.74 3.74 16 46 H 0.42 2.20 8.30 -92.71 -0.77 1.43 16 47 H 0.42 1.40 8.93 -92.70 -0.83 0.57 16 48 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.07 1.43 7.89 -2.39 -0.02 1.41 16 Total: -1.00 -83.80 411.23 -3.17 -86.97 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -2.06 Total: 19.95 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 5.94 Total: 23.96 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -8.92 Total: -124.30 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.16 Total: -53.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -83.80 -3.17 -86.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263842005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.052 kcal (2) G-P(sol) polarization free energy of solvation -83.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds