Wall clock time and date at job start Sat Apr 11 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.30220 * 27.82879 * 4 3 2 6 6 C 1.54387 * 110.34317 * 265.53983 * 4 3 2 7 7 N 1.48148 * 104.61653 * 217.26495 * 6 4 3 8 8 C 1.34779 * 127.83611 * 219.60783 * 7 6 4 9 9 O 1.21287 * 119.99446 * 179.97438 * 8 7 6 10 10 C 1.50695 * 120.00199 * 359.97074 * 8 7 6 11 11 H 1.08998 * 110.49119 * 321.24822 * 10 8 7 12 12 C 1.54104 * 110.54719 * 84.10282 * 10 8 7 13 13 N 1.47060 * 103.86011 * 118.59618 * 12 10 8 14 14 C 1.46499 * 125.40745 * 179.97438 * 13 12 10 15 15 C 1.33943 * 109.17771 * 0.02562 * 13 12 10 16 16 O 1.21595 * 123.04073 * 179.97438 * 15 13 12 17 17 N 1.33952 * 113.91888 * 359.97438 * 15 13 12 18 18 C 1.48153 * 104.32487 * 39.58447 * 7 6 4 19 19 C 1.54288 * 110.33960 * 150.00197 * 4 3 2 20 20 H 1.09000 * 110.34217 * 0.02562 * 19 4 3 21 21 C 1.53000 * 110.34259 * 237.74150 * 19 4 3 22 22 N 1.46501 * 109.47181 * 174.99810 * 21 19 4 23 23 C 1.36935 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00537 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99729 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00121 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99946 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47218 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47329 * 120.00121 * 27 25 23 30 30 H 1.48502 * 109.47021 * 239.99974 * 27 25 23 31 31 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 32 32 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 36 36 H 1.08999 * 110.40597 * 336.04514 * 6 4 3 37 37 H 1.08997 * 110.40864 * 98.48084 * 6 4 3 38 38 H 1.08996 * 110.55407 * 237.18979 * 12 10 8 39 39 H 1.09001 * 110.55254 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.46992 * 179.97438 * 14 13 12 41 41 H 1.08995 * 109.47704 * 299.97717 * 14 13 12 42 42 H 1.09010 * 109.47169 * 59.98161 * 14 13 12 43 43 H 0.96997 * 125.40957 * 180.02562 * 17 15 13 44 44 H 1.08998 * 110.40458 * 201.63493 * 18 7 6 45 45 H 1.08998 * 110.50261 * 79.24779 * 18 7 6 46 46 H 1.09006 * 109.47141 * 295.00391 * 21 19 4 47 47 H 1.09007 * 109.46906 * 55.00272 * 21 19 4 48 48 H 0.96998 * 119.99798 * 0.02562 * 22 21 19 49 49 H 0.96999 * 120.00129 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8794 0.5887 -0.4763 6 6 3.9564 1.6149 1.4440 7 7 5.0843 2.5688 1.3309 8 6 6.2669 2.5309 1.9763 9 8 7.0959 3.3929 1.7740 10 6 6.5592 1.4178 2.9491 11 1 5.6679 1.1716 3.5263 12 6 7.0866 0.1749 2.2063 13 7 8.4348 -0.0208 2.7602 14 6 9.3636 -1.0868 2.3766 15 6 8.6781 0.9297 3.6720 16 8 9.7233 1.0048 4.2888 17 7 7.6658 1.7902 3.8429 18 6 4.6176 3.5733 0.3470 19 6 3.8668 2.7513 -0.7227 20 1 2.9944 3.2997 -1.0780 21 6 4.7993 2.4186 -1.8892 22 7 5.1057 3.6424 -2.6339 23 6 5.9282 3.5906 -3.7275 24 1 6.3508 2.6475 -4.0412 25 6 6.2189 4.7503 -4.4328 26 7 5.7044 5.8997 -4.0502 27 14 7.3404 4.6795 -5.9251 28 1 7.7848 3.2796 -6.1444 29 1 6.6029 5.1585 -7.1217 30 1 8.5255 5.5443 -5.6950 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.1784 2.0214 2.0902 37 1 4.3064 0.6560 1.8259 38 1 6.4581 -0.6909 2.4147 39 1 7.1376 0.3629 1.1339 40 1 10.2869 -0.9871 2.9473 41 1 8.9106 -2.0560 2.5849 42 1 9.5847 -1.0103 1.3119 43 1 7.6633 2.5399 4.4583 44 1 5.4666 4.0916 -0.0987 45 1 3.9434 4.2869 0.8205 46 1 5.7231 1.9866 -1.5041 47 1 4.3118 1.7028 -2.5512 48 1 4.7264 4.4895 -2.3519 49 1 5.9072 6.7100 -4.5433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264532311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:32 Heat of formation + Delta-G solvation = -62.847947 kcal Electronic energy + Delta-G solvation = -30954.868496 eV Core-core repulsion = 26725.640602 eV Total energy + Delta-G solvation = -4229.227894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.58144 -40.04178 -38.52352 -36.76720 -36.30172 -34.67191 -34.31708 -32.35541 -31.40890 -30.23960 -29.24145 -28.36365 -27.49297 -25.69847 -24.22207 -23.39231 -23.01612 -21.91585 -20.79287 -20.16292 -19.60800 -18.00360 -17.81007 -17.24084 -16.95813 -16.49491 -16.25386 -15.88615 -15.36730 -15.14904 -14.69076 -14.59067 -14.42046 -14.11736 -14.05042 -13.77214 -13.69523 -13.62520 -13.25217 -12.89736 -12.82531 -12.77598 -12.57009 -12.46362 -12.24839 -11.87667 -11.82955 -11.59261 -11.20231 -11.04263 -10.80119 -10.77797 -10.53107 -10.48347 -10.29100 -10.07818 -9.84896 -9.61596 -9.41842 -8.91770 -8.86347 -8.76299 -6.95361 -5.77579 -3.06971 2.16923 2.44546 2.60601 3.02581 3.43735 3.44878 3.49498 3.51488 3.63801 3.94961 4.10567 4.39815 4.43699 4.55394 4.66515 4.72816 4.83666 4.91217 4.94383 5.00316 5.08372 5.12599 5.15159 5.26082 5.28198 5.33887 5.48141 5.51821 5.59259 5.62304 5.65676 5.71136 5.81958 5.92184 6.01897 6.04280 6.21844 6.32158 6.38964 6.60236 6.70232 6.84674 7.11864 7.19823 7.40721 7.68752 7.99335 8.37831 8.40423 9.52207 10.07306 10.41812 11.45187 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007076 B = 0.003895 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3956.075928 B = 7186.708601 C = 9895.916544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.372 6.372 4 C 0.084 3.916 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.614 5.614 8 C 0.521 3.479 9 O -0.510 6.510 10 C 0.109 3.891 11 H 0.114 0.886 12 C 0.106 3.894 13 N -0.636 5.636 14 C 0.118 3.882 15 C 0.706 3.294 16 O -0.583 6.583 17 N -0.715 5.715 18 C 0.112 3.888 19 C -0.107 4.107 20 H 0.103 0.897 21 C 0.165 3.835 22 N -0.730 5.730 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.434 0.566 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.018 0.982 47 H 0.021 0.979 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -17.444 15.782 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.290 6.290 4 C 0.024 3.976 5 H 0.097 0.903 6 C -0.045 4.045 7 N -0.350 5.350 8 C 0.306 3.694 9 O -0.383 6.383 10 C -0.002 4.002 11 H 0.131 0.869 12 C -0.018 4.018 13 N -0.375 5.375 14 C -0.023 4.023 15 C 0.407 3.593 16 O -0.461 6.461 17 N -0.377 5.377 18 C -0.010 4.010 19 C -0.127 4.127 20 H 0.121 0.879 21 C 0.038 3.962 22 N -0.374 5.374 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.276 0.724 44 H 0.121 0.879 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.039 0.961 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.252 -16.984 15.860 24.343 hybrid contribution 0.322 0.415 -0.669 0.851 sum -6.929 -16.569 15.191 23.522 Atomic orbital electron populations 1.21744 0.93799 1.02103 1.03275 1.22540 0.95646 0.83990 1.00043 1.88003 1.20071 1.26229 1.94734 1.22991 0.81304 0.99394 0.93898 0.90341 1.22946 0.89499 0.93446 0.98642 1.48859 1.14250 1.28377 1.43550 1.20255 0.80498 0.87061 0.81607 1.90826 1.44887 1.39192 1.63394 1.21795 0.93208 0.93390 0.91764 0.86868 1.22265 0.84260 0.95760 0.99530 1.46974 1.16845 1.31238 1.42462 1.21447 0.92691 0.87301 1.00902 1.15787 0.83361 0.79896 0.80291 1.90962 1.25834 1.76418 1.52838 1.44833 1.15715 1.33442 1.43670 1.22533 0.99790 0.90737 0.87958 1.22453 0.99729 0.94788 0.95688 0.87907 1.20628 0.94382 0.91027 0.90196 1.42318 1.58038 1.04609 1.32456 1.19210 1.20830 0.93884 1.03326 0.91225 1.24729 1.00835 0.95432 0.99688 1.69659 1.48305 0.98095 1.41831 0.86133 0.80230 0.77230 0.82671 1.20593 1.21816 1.21805 0.91925 0.91647 0.91277 0.93085 0.93527 0.89608 0.90386 0.88832 0.89224 0.89440 0.91973 0.91785 0.72357 0.87938 0.90919 0.96407 0.96115 0.78154 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.42 6.50 37.16 0.24 0.67 16 3 O -0.37 -4.01 9.95 -35.23 -0.35 -4.36 16 4 C 0.08 0.89 3.20 -25.33 -0.08 0.81 16 5 H 0.08 0.77 7.38 -51.93 -0.38 0.39 16 6 C 0.08 0.66 6.49 -2.41 -0.02 0.65 16 7 N -0.61 -7.48 3.32 -169.31 -0.56 -8.04 16 8 C 0.52 7.05 7.02 -10.99 -0.08 6.97 16 9 O -0.51 -9.68 16.87 5.55 0.09 -9.58 16 10 C 0.11 1.03 3.34 -68.21 -0.23 0.80 16 11 H 0.11 0.65 7.59 -51.93 -0.39 0.26 16 12 C 0.11 0.90 7.15 -3.16 -0.02 0.87 16 13 N -0.64 -7.05 3.36 -186.73 -0.63 -7.68 16 14 C 0.12 1.00 11.21 59.85 0.67 1.67 16 15 C 0.71 10.01 8.60 -88.40 -0.76 9.25 16 16 O -0.58 -10.44 17.29 5.28 0.09 -10.35 16 17 N -0.72 -8.42 5.63 -59.33 -0.33 -8.76 16 18 C 0.11 1.67 6.47 -2.41 -0.02 1.65 16 19 C -0.11 -1.57 2.90 -89.22 -0.26 -1.83 16 20 H 0.10 1.61 7.98 -51.93 -0.41 1.20 16 21 C 0.17 3.13 5.37 -4.04 -0.02 3.11 16 22 N -0.73 -18.05 5.21 -59.90 -0.31 -18.37 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 27 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.08 0.41 7.10 -51.93 -0.37 0.04 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.85 7.72 -51.93 -0.40 0.45 16 40 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.43 4.68 8.96 -40.82 -0.37 4.31 16 44 H 0.10 1.99 7.31 -51.93 -0.38 1.61 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 47 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.38 9.99 7.61 -40.82 -0.31 9.68 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -38.15 402.49 -8.69 -46.83 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.02 Total: 7.44 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -0.43 Total: 16.67 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.11 Total: -70.31 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.17 Total: -24.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.15 -8.69 -46.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264532311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.014 kcal (2) G-P(sol) polarization free energy of solvation -38.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds