Wall clock time and date at job start Sat Apr 11 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.30220 * 27.82879 * 4 3 2 6 6 C 1.54387 * 110.34317 * 265.53983 * 4 3 2 7 7 N 1.48148 * 104.61653 * 217.26495 * 6 4 3 8 8 C 1.34779 * 127.83611 * 219.60783 * 7 6 4 9 9 O 1.21287 * 119.99446 * 179.97438 * 8 7 6 10 10 C 1.50695 * 120.00199 * 359.97074 * 8 7 6 11 11 H 1.08998 * 110.49119 * 321.24822 * 10 8 7 12 12 C 1.54104 * 110.54719 * 84.10282 * 10 8 7 13 13 N 1.47060 * 103.86011 * 118.59618 * 12 10 8 14 14 C 1.46499 * 125.40745 * 179.97438 * 13 12 10 15 15 C 1.33943 * 109.17771 * 0.02562 * 13 12 10 16 16 O 1.21595 * 123.04073 * 179.97438 * 15 13 12 17 17 N 1.33952 * 113.91888 * 359.97438 * 15 13 12 18 18 C 1.48153 * 104.32487 * 39.58447 * 7 6 4 19 19 C 1.54288 * 110.33960 * 150.00197 * 4 3 2 20 20 H 1.09000 * 110.34217 * 0.02562 * 19 4 3 21 21 C 1.53000 * 110.34259 * 237.74150 * 19 4 3 22 22 N 1.46501 * 109.47181 * 174.99810 * 21 19 4 23 23 C 1.36935 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00537 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99729 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00121 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99946 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47218 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47329 * 120.00121 * 27 25 23 30 30 H 1.48502 * 109.47021 * 239.99974 * 27 25 23 31 31 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 32 32 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 33 33 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 36 36 H 1.08999 * 110.40597 * 336.04514 * 6 4 3 37 37 H 1.08997 * 110.40864 * 98.48084 * 6 4 3 38 38 H 1.08996 * 110.55407 * 237.18979 * 12 10 8 39 39 H 1.09001 * 110.55254 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.46992 * 179.97438 * 14 13 12 41 41 H 1.08995 * 109.47704 * 299.97717 * 14 13 12 42 42 H 1.09010 * 109.47169 * 59.98161 * 14 13 12 43 43 H 0.96997 * 125.40957 * 180.02562 * 17 15 13 44 44 H 1.08998 * 110.40458 * 201.63493 * 18 7 6 45 45 H 1.08998 * 110.50261 * 79.24779 * 18 7 6 46 46 H 1.09006 * 109.47141 * 295.00391 * 21 19 4 47 47 H 1.09007 * 109.46906 * 55.00272 * 21 19 4 48 48 H 0.96998 * 119.99798 * 0.02562 * 22 21 19 49 49 H 0.96999 * 120.00129 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8794 0.5887 -0.4763 6 6 3.9564 1.6149 1.4440 7 7 5.0843 2.5688 1.3309 8 6 6.2669 2.5309 1.9763 9 8 7.0959 3.3929 1.7740 10 6 6.5592 1.4178 2.9491 11 1 5.6679 1.1716 3.5263 12 6 7.0866 0.1749 2.2063 13 7 8.4348 -0.0208 2.7602 14 6 9.3636 -1.0868 2.3766 15 6 8.6781 0.9297 3.6720 16 8 9.7233 1.0048 4.2888 17 7 7.6658 1.7902 3.8429 18 6 4.6176 3.5733 0.3470 19 6 3.8668 2.7513 -0.7227 20 1 2.9944 3.2997 -1.0780 21 6 4.7993 2.4186 -1.8892 22 7 5.1057 3.6424 -2.6339 23 6 5.9282 3.5906 -3.7275 24 1 6.3508 2.6475 -4.0412 25 6 6.2189 4.7503 -4.4328 26 7 5.7044 5.8997 -4.0502 27 14 7.3404 4.6795 -5.9251 28 1 7.7848 3.2796 -6.1444 29 1 6.6029 5.1585 -7.1217 30 1 8.5255 5.5443 -5.6950 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.1784 2.0214 2.0902 37 1 4.3064 0.6560 1.8259 38 1 6.4581 -0.6909 2.4147 39 1 7.1376 0.3629 1.1339 40 1 10.2869 -0.9871 2.9473 41 1 8.9106 -2.0560 2.5849 42 1 9.5847 -1.0103 1.3119 43 1 7.6633 2.5399 4.4583 44 1 5.4666 4.0916 -0.0987 45 1 3.9434 4.2869 0.8205 46 1 5.7231 1.9866 -1.5041 47 1 4.3118 1.7028 -2.5512 48 1 4.7264 4.4895 -2.3519 49 1 5.9072 6.7100 -4.5433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264532311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:29 Heat of formation + Delta-G solvation = -94.210557 kcal Electronic energy + Delta-G solvation = -30956.228481 eV Core-core repulsion = 26725.640602 eV Total energy + Delta-G solvation = -4230.587878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -42.49234 -41.04391 -39.52849 -37.75626 -37.37931 -36.38201 -35.14305 -33.90839 -32.42397 -31.44524 -30.28653 -29.30157 -28.33838 -27.10445 -25.59471 -24.45230 -23.81184 -23.08332 -21.68818 -21.29680 -20.64825 -19.29416 -18.84325 -18.60581 -17.97895 -17.41106 -17.24269 -16.74422 -16.58894 -16.27843 -15.99325 -15.62385 -15.50798 -15.26278 -15.13542 -15.08892 -14.77836 -14.59538 -14.45327 -14.15770 -13.86178 -13.49628 -13.29781 -13.15886 -13.09799 -13.03784 -12.97338 -12.86060 -12.70296 -12.30650 -12.19727 -12.13279 -11.96983 -11.71441 -11.60544 -11.54580 -11.40354 -10.99163 -10.54578 -10.38945 -9.80834 -9.63254 -9.03015 -7.98044 -5.26768 1.25488 1.43649 1.45630 1.48565 1.54729 1.70803 2.03838 2.51600 2.71840 2.86226 3.19685 3.23805 3.36247 3.55472 3.63117 3.84148 3.91193 4.04155 4.08070 4.26545 4.35227 4.37788 4.42014 4.45343 4.47947 4.56687 4.66121 4.69446 4.69779 4.76303 4.82502 4.84373 4.89218 4.92927 4.96061 5.03594 5.13381 5.19531 5.30668 5.42106 5.46456 5.58396 5.96811 6.24118 6.29569 6.39631 6.45187 6.97908 7.30666 7.39336 8.06061 8.27825 9.25752 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007076 B = 0.003895 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3956.075928 B = 7186.708601 C = 9895.916544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.093 3.907 5 H 0.094 0.906 6 C 0.082 3.918 7 N -0.608 5.608 8 C 0.516 3.484 9 O -0.580 6.580 10 C 0.118 3.882 11 H 0.169 0.831 12 C 0.104 3.896 13 N -0.637 5.637 14 C 0.113 3.887 15 C 0.692 3.308 16 O -0.634 6.634 17 N -0.716 5.716 18 C 0.114 3.886 19 C -0.100 4.100 20 H 0.088 0.912 21 C 0.167 3.833 22 N -0.744 5.744 23 C -0.245 4.245 24 H 0.075 0.925 25 C -0.074 4.074 26 N -0.968 5.968 27 Si 0.970 3.030 28 H -0.264 1.264 29 H -0.289 1.289 30 H -0.298 1.298 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.434 0.566 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.014 0.986 47 H 0.027 0.973 48 H 0.374 0.626 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 -21.332 16.811 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.310 6.310 4 C 0.034 3.966 5 H 0.112 0.888 6 C -0.040 4.040 7 N -0.342 5.342 8 C 0.303 3.697 9 O -0.458 6.458 10 C 0.008 3.992 11 H 0.186 0.814 12 C -0.019 4.019 13 N -0.375 5.375 14 C -0.028 4.028 15 C 0.392 3.608 16 O -0.516 6.516 17 N -0.376 5.376 18 C -0.009 4.009 19 C -0.120 4.120 20 H 0.107 0.893 21 C 0.041 3.959 22 N -0.387 5.387 23 C -0.376 4.376 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.799 3.201 28 H -0.189 1.189 29 H -0.216 1.216 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.277 0.723 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.205 0.795 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.202 -20.969 16.876 28.446 hybrid contribution 0.818 1.589 -1.021 2.059 sum -8.384 -19.380 15.854 26.405 Atomic orbital electron populations 1.21776 0.93572 1.03200 1.02417 1.22794 0.95891 0.82640 1.01596 1.87987 1.19646 1.28429 1.94906 1.22832 0.81890 0.97100 0.94782 0.88842 1.23236 0.88403 0.94903 0.97442 1.48892 1.14951 1.28243 1.42118 1.21149 0.79704 0.87239 0.81567 1.90803 1.47134 1.42152 1.65730 1.22122 0.94424 0.91741 0.90864 0.81366 1.22626 0.83570 0.97085 0.98625 1.47193 1.18285 1.30678 1.41369 1.21641 0.92145 0.88225 1.00815 1.16161 0.83110 0.80784 0.80735 1.90910 1.27906 1.77825 1.54946 1.44904 1.16085 1.33028 1.43588 1.22257 0.97935 0.91699 0.89010 1.22254 0.98028 0.97360 0.94342 0.89328 1.20750 0.95080 0.88811 0.91249 1.42556 1.57589 1.06142 1.32398 1.19632 1.20316 0.93970 1.03727 0.90672 1.25551 1.02953 0.95271 1.02878 1.69815 1.50198 0.98591 1.43286 0.85119 0.77958 0.77726 0.79251 1.18862 1.21599 1.22520 0.91856 0.93470 0.89216 0.93074 0.90326 0.87849 0.85204 0.83034 0.90277 0.91409 0.88306 0.91234 0.72333 0.93282 0.89906 0.96842 0.95492 0.79453 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.05 0.53 6.50 71.98 0.47 1.00 16 3 O -0.39 -7.10 9.95 -148.98 -1.48 -8.58 16 4 C 0.09 1.66 3.20 31.50 0.10 1.76 16 5 H 0.09 1.41 7.38 -2.39 -0.02 1.39 16 6 C 0.08 0.97 6.49 86.53 0.56 1.53 16 7 N -0.61 -13.55 3.32 -807.95 -2.68 -16.22 16 8 C 0.52 13.27 7.02 87.66 0.62 13.88 16 9 O -0.58 -22.86 16.87 -3.05 -0.05 -22.91 16 10 C 0.12 1.80 3.34 44.51 0.15 1.95 16 11 H 0.17 0.80 7.59 -2.39 -0.02 0.78 16 12 C 0.10 1.28 7.15 86.65 0.62 1.90 16 13 N -0.64 -12.63 3.36 -863.41 -2.90 -15.53 16 14 C 0.11 1.68 11.21 127.77 1.43 3.11 16 15 C 0.69 19.15 8.60 179.57 1.55 20.70 16 16 O -0.63 -23.32 17.29 -4.02 -0.07 -23.39 16 17 N -0.72 -15.93 5.63 -460.35 -2.59 -18.52 16 18 C 0.11 3.47 6.47 86.53 0.56 4.03 16 19 C -0.10 -2.89 2.90 -9.89 -0.03 -2.91 16 20 H 0.09 2.82 7.98 -2.39 -0.02 2.80 16 21 C 0.17 6.36 5.37 86.38 0.46 6.82 16 22 N -0.74 -38.01 5.21 -343.44 -1.79 -39.79 16 23 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 24 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 26 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 27 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 28 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 29 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 30 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.59 8.10 -2.39 -0.02 0.57 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.13 0.29 7.10 -2.39 -0.02 0.28 16 38 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.08 1.21 7.72 -2.39 -0.02 1.19 16 40 H 0.07 1.29 7.52 -2.39 -0.02 1.27 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.43 9.25 8.96 -92.71 -0.83 8.42 16 44 H 0.05 2.04 7.31 -2.39 -0.02 2.02 16 45 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.01 0.53 8.13 -2.38 -0.02 0.51 16 47 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.37 20.43 7.61 -92.71 -0.71 19.73 16 49 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -91.44 402.49 -1.29 -92.73 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.57 Total: 27.43 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 8.53 Total: 35.92 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -9.68 Total: -150.47 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.60 Total: -54.87 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -91.44 -1.29 -92.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264532311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.485 kcal (2) G-P(sol) polarization free energy of solvation -91.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds