Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 C 1.52999 * 109.46881 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47113 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99928 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00151 * 180.02562 * 7 6 5 10 10 H 1.09003 * 109.40210 * 299.83270 * 9 7 6 11 11 C 1.53070 * 109.40523 * 180.02562 * 9 7 6 12 12 C 1.53349 * 108.42700 * 190.97453 * 11 9 7 13 13 C 1.52922 * 108.67579 * 67.52767 * 12 11 9 14 14 N 1.45756 * 110.48708 * 309.25044 * 13 12 11 15 15 C 1.33349 * 124.10803 * 19.07533 * 14 13 12 16 16 O 1.21282 * 118.24614 * 177.78221 * 15 14 13 17 17 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 18 18 C 1.50696 * 109.47351 * 293.95574 * 17 2 1 19 19 O 1.21297 * 120.00140 * 0.02562 * 18 17 2 20 20 N 1.34775 * 120.00393 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00184 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00243 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99747 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47265 * 59.99782 * 25 23 21 27 27 H 1.48503 * 109.47225 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47079 * 299.99726 * 25 23 21 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08994 * 109.47270 * 300.00135 * 4 3 2 35 35 H 1.08999 * 109.47017 * 60.00257 * 4 3 2 36 36 H 1.09005 * 109.47573 * 300.00357 * 5 4 3 37 37 H 1.08999 * 109.47126 * 60.00273 * 5 4 3 38 38 H 0.96996 * 120.00194 * 0.02562 * 6 5 4 39 39 H 1.09005 * 109.66852 * 310.70849 * 11 9 7 40 40 H 1.08996 * 109.67076 * 71.20131 * 11 9 7 41 41 H 1.08992 * 109.59906 * 187.28471 * 12 11 9 42 42 H 1.08998 * 109.59778 * 307.61075 * 12 11 9 43 43 H 1.09004 * 109.29931 * 69.55723 * 13 12 11 44 44 H 1.08994 * 109.29934 * 189.14124 * 13 12 11 45 45 H 0.96998 * 117.94761 * 199.07376 * 14 13 12 46 46 H 1.08997 * 109.46995 * 53.95554 * 17 2 1 47 47 H 1.09001 * 109.46848 * 173.95560 * 17 2 1 48 48 H 0.96996 * 119.99654 * 0.02562 * 20 18 17 49 49 H 0.97004 * 119.99438 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1794 3.4859 1.3181 6 7 1.8303 4.1429 2.5802 7 6 2.2118 5.4158 2.8052 8 8 2.8437 6.0175 1.9628 9 6 1.8533 6.0915 4.1036 10 1 0.7688 6.1206 4.2093 11 6 2.4020 7.5205 4.1017 12 6 2.2715 8.0918 5.5188 13 6 3.2229 7.3308 6.4431 14 7 3.0350 5.8928 6.2966 15 6 2.4443 5.3189 5.2478 16 8 2.3806 4.1081 5.2164 17 6 1.9954 -0.7660 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0046 -2.5832 -0.0035 20 7 2.0188 -3.1181 -1.9029 21 6 1.6930 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8892 23 6 2.0872 -5.3669 -2.7113 24 7 2.7719 -4.9738 -3.7618 25 14 1.6428 -7.1698 -2.5071 26 1 0.1655 -7.3128 -2.4565 27 1 2.1765 -7.9444 -3.6562 28 1 2.2335 -7.6855 -1.2460 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5013 2.1492 36 1 3.2637 3.4593 1.2096 37 1 1.7447 4.0416 0.4873 38 1 1.3253 3.6616 3.2541 39 1 3.4509 7.5104 3.8052 40 1 1.8295 8.1324 3.4046 41 1 2.5356 9.1492 5.5125 42 1 1.2458 7.9730 5.8679 43 1 4.2519 7.5871 6.1910 44 1 3.0240 7.6136 7.4767 45 1 3.3601 5.3172 7.0064 46 1 1.5611 -0.3872 -2.0628 47 1 3.0797 -0.6611 -1.1757 48 1 2.5247 -2.8281 -2.6779 49 1 3.0473 -5.6201 -4.4307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264997914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -110.253046 kcal Electronic energy + Delta-G solvation = -28860.776802 eV Core-core repulsion = 24629.493269 eV Total energy + Delta-G solvation = -4231.283533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33882 -39.31201 -38.60471 -37.14793 -36.81261 -35.12791 -33.81562 -33.62906 -31.63189 -31.17665 -30.35099 -27.82379 -26.68663 -25.38599 -24.51637 -23.32758 -22.66654 -21.27320 -20.66238 -19.57787 -19.09544 -18.01757 -17.78881 -17.44049 -17.00794 -16.36684 -15.96768 -15.73458 -15.51015 -15.12011 -14.92768 -14.71486 -14.58487 -14.48074 -14.10821 -14.04312 -13.84649 -13.54925 -13.33027 -13.21786 -12.56304 -12.24531 -12.07763 -12.05073 -11.91943 -11.76456 -11.61711 -11.59633 -11.42893 -11.19095 -11.18609 -10.85879 -10.63384 -10.40855 -10.36428 -10.17661 -10.12159 -9.65205 -9.42758 -9.21315 -8.40199 -7.93183 -7.78328 -6.37515 -3.78190 1.92627 2.28074 2.77427 2.96027 3.23139 3.28432 3.32992 3.90949 3.95609 4.00374 4.06815 4.12014 4.17218 4.29344 4.57484 4.66948 4.71053 4.90904 4.97191 5.04324 5.12456 5.13141 5.16619 5.23410 5.29668 5.38779 5.48445 5.58367 5.64784 5.65759 5.76947 5.80415 5.98959 6.04589 6.07854 6.17406 6.19256 6.29379 6.34193 6.62813 6.69104 7.28577 7.33620 7.46217 7.59034 7.62603 7.95468 8.10820 8.66818 9.22490 9.59310 10.11651 10.80234 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.001521 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.295742 B =18399.874337 C =18807.245828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.710 5.710 7 C 0.528 3.472 8 O -0.539 6.539 9 C -0.127 4.127 10 H 0.131 0.869 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.106 3.894 14 N -0.715 5.715 15 C 0.528 3.472 16 O -0.540 6.540 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.096 0.904 30 H 0.013 0.987 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.410 0.590 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.404 0.596 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 29.718 17.006 34.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.362 5.362 7 C 0.312 3.688 8 O -0.416 6.416 9 C -0.151 4.151 10 H 0.148 0.852 11 C -0.144 4.144 12 C -0.176 4.176 13 C -0.018 4.018 14 N -0.368 5.368 15 C 0.313 3.687 16 O -0.418 6.418 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.114 0.886 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.240 0.760 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.505 29.042 17.103 33.707 hybrid contribution -0.214 -0.676 -0.565 0.906 sum -0.719 28.366 16.538 32.843 Atomic orbital electron populations 1.22590 0.86893 1.04582 0.98736 1.61541 1.08663 1.11286 1.42775 1.21996 1.00420 0.88924 0.95677 1.21775 1.01738 0.93489 0.99558 1.21359 1.00718 0.92840 0.85469 1.46040 1.56856 1.13212 1.20091 1.19758 0.79570 0.82031 0.87462 1.90724 1.39808 1.64652 1.46406 1.21482 1.04000 0.97237 0.92421 0.85171 1.21526 1.03579 0.92242 0.97024 1.21930 1.00297 1.00721 0.94673 1.21480 1.00112 0.79526 1.00680 1.45367 1.60136 1.08841 1.22433 1.19578 0.78015 0.87991 0.83078 1.90800 1.58157 1.14132 1.78677 1.21870 1.00700 0.94129 0.91838 1.19751 0.85384 0.86676 0.85184 1.90478 1.43886 1.80170 1.31631 1.41858 1.49481 1.07336 1.21510 1.19653 1.32962 0.82333 1.07907 0.87981 1.25252 0.96848 1.00523 0.95320 1.69609 1.38069 1.35799 1.10927 0.85921 0.78857 0.81758 0.77679 1.19959 1.21015 1.19919 0.88593 0.96802 0.92111 0.90623 0.94947 0.91115 0.89966 0.91325 0.91449 0.75270 0.89797 0.89639 0.89043 0.90667 0.91190 0.90136 0.75967 0.93481 0.89389 0.77500 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.01 60.07 0.54 0.87 16 2 N -0.52 -8.94 4.50 -244.37 -1.10 -10.04 16 3 C 0.06 0.77 4.96 -3.82 -0.02 0.76 16 4 C -0.13 -1.47 5.26 -26.73 -0.14 -1.61 16 5 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 6 N -0.71 -7.52 5.04 -60.29 -0.30 -7.83 16 7 C 0.53 5.74 7.06 -10.99 -0.08 5.66 16 8 O -0.54 -7.47 15.79 5.55 0.09 -7.38 16 9 C -0.13 -0.92 2.78 -93.14 -0.26 -1.18 16 10 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.11 -0.57 4.78 -26.51 -0.13 -0.69 16 12 C -0.14 -0.34 6.02 -26.59 -0.16 -0.50 16 13 C 0.11 0.27 7.17 -4.48 -0.03 0.24 16 14 N -0.72 -3.87 5.45 -61.39 -0.33 -4.21 16 15 C 0.53 4.44 7.28 -11.87 -0.09 4.35 16 16 O -0.54 -6.47 15.53 5.56 0.09 -6.38 16 17 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 18 C 0.44 10.75 7.51 -10.99 -0.08 10.67 16 19 O -0.58 -15.84 13.88 5.54 0.08 -15.76 16 20 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.10 1.94 5.88 -51.93 -0.31 1.64 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 32 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.78 6.47 -51.93 -0.34 0.45 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 4.09 7.10 -40.82 -0.29 3.80 16 39 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.07 0.15 8.12 -51.93 -0.42 -0.27 16 43 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.40 1.90 8.80 -40.82 -0.36 1.54 16 46 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 47 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 48 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 49 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -35.85 396.70 -8.35 -44.20 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.75 Total: 11.34 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -0.73 Total: 12.57 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -1.07 Total: -60.90 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: 0.25 Total: -29.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.85 -8.35 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264997914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.057 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds