Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 C 1.52999 * 109.46881 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47113 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99928 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00151 * 180.02562 * 7 6 5 10 10 H 1.09003 * 109.40210 * 299.83270 * 9 7 6 11 11 C 1.53070 * 109.40523 * 180.02562 * 9 7 6 12 12 C 1.53349 * 108.42700 * 190.97453 * 11 9 7 13 13 C 1.52922 * 108.67579 * 67.52767 * 12 11 9 14 14 N 1.45756 * 110.48708 * 309.25044 * 13 12 11 15 15 C 1.33349 * 124.10803 * 19.07533 * 14 13 12 16 16 O 1.21282 * 118.24614 * 177.78221 * 15 14 13 17 17 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 18 18 C 1.50696 * 109.47351 * 293.95574 * 17 2 1 19 19 O 1.21297 * 120.00140 * 0.02562 * 18 17 2 20 20 N 1.34775 * 120.00393 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00184 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00243 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99747 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47265 * 59.99782 * 25 23 21 27 27 H 1.48503 * 109.47225 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47079 * 299.99726 * 25 23 21 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08994 * 109.47270 * 300.00135 * 4 3 2 35 35 H 1.08999 * 109.47017 * 60.00257 * 4 3 2 36 36 H 1.09005 * 109.47573 * 300.00357 * 5 4 3 37 37 H 1.08999 * 109.47126 * 60.00273 * 5 4 3 38 38 H 0.96996 * 120.00194 * 0.02562 * 6 5 4 39 39 H 1.09005 * 109.66852 * 310.70849 * 11 9 7 40 40 H 1.08996 * 109.67076 * 71.20131 * 11 9 7 41 41 H 1.08992 * 109.59906 * 187.28471 * 12 11 9 42 42 H 1.08998 * 109.59778 * 307.61075 * 12 11 9 43 43 H 1.09004 * 109.29931 * 69.55723 * 13 12 11 44 44 H 1.08994 * 109.29934 * 189.14124 * 13 12 11 45 45 H 0.96998 * 117.94761 * 199.07376 * 14 13 12 46 46 H 1.08997 * 109.46995 * 53.95554 * 17 2 1 47 47 H 1.09001 * 109.46848 * 173.95560 * 17 2 1 48 48 H 0.96996 * 119.99654 * 0.02562 * 20 18 17 49 49 H 0.97004 * 119.99438 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1794 3.4859 1.3181 6 7 1.8303 4.1429 2.5802 7 6 2.2118 5.4158 2.8052 8 8 2.8437 6.0175 1.9628 9 6 1.8533 6.0915 4.1036 10 1 0.7688 6.1206 4.2093 11 6 2.4020 7.5205 4.1017 12 6 2.2715 8.0918 5.5188 13 6 3.2229 7.3308 6.4431 14 7 3.0350 5.8928 6.2966 15 6 2.4443 5.3189 5.2478 16 8 2.3806 4.1081 5.2164 17 6 1.9954 -0.7660 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0046 -2.5832 -0.0035 20 7 2.0188 -3.1181 -1.9029 21 6 1.6930 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8892 23 6 2.0872 -5.3669 -2.7113 24 7 2.7719 -4.9738 -3.7618 25 14 1.6428 -7.1698 -2.5071 26 1 0.1655 -7.3128 -2.4565 27 1 2.1765 -7.9444 -3.6562 28 1 2.2335 -7.6855 -1.2460 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5013 2.1492 36 1 3.2637 3.4593 1.2096 37 1 1.7447 4.0416 0.4873 38 1 1.3253 3.6616 3.2541 39 1 3.4509 7.5104 3.8052 40 1 1.8295 8.1324 3.4046 41 1 2.5356 9.1492 5.5125 42 1 1.2458 7.9730 5.8679 43 1 4.2519 7.5871 6.1910 44 1 3.0240 7.6136 7.4767 45 1 3.3601 5.3172 7.0064 46 1 1.5611 -0.3872 -2.0628 47 1 3.0797 -0.6611 -1.1757 48 1 2.5247 -2.8281 -2.6779 49 1 3.0473 -5.6201 -4.4307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264997914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -140.141267 kcal Electronic energy + Delta-G solvation = -28862.072852 eV Core-core repulsion = 24629.493269 eV Total energy + Delta-G solvation = -4232.579583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97620 -40.40473 -40.05317 -38.31250 -37.57289 -36.23501 -35.76440 -34.16580 -33.28328 -32.57426 -30.87641 -29.35488 -27.71551 -26.70769 -25.69313 -23.93767 -23.70096 -22.16820 -21.61008 -20.97367 -20.08826 -19.84311 -18.60881 -18.11975 -17.85627 -17.57807 -17.08432 -16.79306 -16.56453 -16.43597 -16.17367 -15.94586 -15.58966 -15.33143 -15.21406 -15.03674 -15.01691 -14.63532 -14.45234 -14.29053 -13.73893 -13.47153 -13.36616 -13.03068 -12.98053 -12.86062 -12.72531 -12.52882 -12.41942 -12.39171 -12.33581 -12.24589 -12.11766 -11.94241 -11.66594 -11.44831 -11.11116 -10.85005 -10.27692 -10.11958 -10.07877 -9.99365 -9.18948 -8.45446 -5.94224 1.23495 1.40172 1.41641 1.52764 1.56308 2.06622 2.12793 2.29453 2.33839 2.80862 3.21233 3.42796 3.43766 3.48810 3.73591 3.85980 3.93826 4.01465 4.11557 4.18471 4.24205 4.32867 4.39835 4.48348 4.50575 4.54776 4.59329 4.61553 4.72516 4.76086 4.77893 4.84422 5.05672 5.06764 5.09118 5.17597 5.27777 5.32631 5.41635 5.42455 5.75097 5.89208 6.08089 6.20606 6.22865 6.46440 6.62128 7.05672 7.14001 7.14458 7.57618 8.13877 8.71742 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.001521 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.295742 B =18399.874337 C =18807.245828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.060 3.940 4 C -0.114 4.114 5 C 0.126 3.874 6 N -0.709 5.709 7 C 0.521 3.479 8 O -0.573 6.573 9 C -0.122 4.122 10 H 0.155 0.845 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.099 3.901 14 N -0.707 5.707 15 C 0.523 3.477 16 O -0.585 6.585 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.407 0.593 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.396 0.604 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 31.636 17.706 36.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.068 4.068 4 C -0.152 4.152 5 C 0.002 3.998 6 N -0.360 5.360 7 C 0.307 3.693 8 O -0.453 6.453 9 C -0.145 4.145 10 H 0.173 0.827 11 C -0.142 4.142 12 C -0.169 4.169 13 C -0.024 4.024 14 N -0.357 5.357 15 C 0.308 3.692 16 O -0.466 6.466 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.244 0.756 46 H 0.086 0.914 47 H 0.126 0.874 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.655 31.016 17.825 35.779 hybrid contribution -0.139 -1.186 -0.728 1.398 sum -0.794 29.830 17.097 34.391 Atomic orbital electron populations 1.22471 0.86853 1.02460 1.00532 1.61485 1.08971 1.13579 1.42421 1.22057 1.00821 0.86863 0.97015 1.21619 1.02040 0.93364 0.98202 1.21232 1.00046 0.92522 0.86001 1.46088 1.56634 1.13368 1.19956 1.20385 0.78734 0.81835 0.88353 1.90700 1.41346 1.65394 1.47896 1.21520 1.05493 0.97590 0.89931 0.82744 1.21539 1.02192 0.91185 0.99267 1.21949 1.00956 1.01647 0.92331 1.21773 1.00582 0.77576 1.02442 1.45444 1.58466 1.10347 1.21457 1.19787 0.78064 0.87514 0.83791 1.90777 1.60222 1.15910 1.79738 1.21748 1.02066 0.90231 0.93343 1.20787 0.83730 0.88791 0.83882 1.90457 1.45153 1.81461 1.32979 1.41929 1.50063 1.07045 1.22191 1.19636 1.34532 0.84085 1.08136 0.90322 1.26037 0.96235 1.04338 0.94651 1.69672 1.38061 1.37232 1.11208 0.84985 0.78620 0.76717 0.77966 1.19671 1.19449 1.19823 0.92688 0.95293 0.89904 0.89941 0.93174 0.90350 0.91466 0.92364 0.90935 0.74856 0.91806 0.89279 0.86870 0.89576 0.90690 0.87344 0.75614 0.91386 0.87373 0.77053 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.01 127.69 1.15 1.96 16 2 N -0.54 -18.09 4.50 -927.04 -4.17 -22.26 16 3 C 0.06 1.48 4.96 86.30 0.43 1.91 16 4 C -0.11 -2.51 5.26 30.60 0.16 -2.35 16 5 C 0.13 2.68 5.67 86.38 0.49 3.17 16 6 N -0.71 -14.80 5.04 -463.05 -2.33 -17.14 16 7 C 0.52 11.20 7.06 87.66 0.62 11.82 16 8 O -0.57 -15.96 15.79 -3.05 -0.05 -16.01 16 9 C -0.12 -1.63 2.78 -12.43 -0.03 -1.66 16 10 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 11 C -0.10 -0.96 4.78 30.73 0.15 -0.82 16 12 C -0.13 -0.26 6.02 30.69 0.18 -0.08 16 13 C 0.10 0.24 7.17 86.49 0.62 0.86 16 14 N -0.71 -6.63 5.45 -467.31 -2.55 -9.17 16 15 C 0.52 8.42 7.28 87.72 0.64 9.05 16 16 O -0.59 -14.10 15.53 -3.04 -0.05 -14.14 16 17 C 0.06 2.07 5.45 85.55 0.47 2.54 16 18 C 0.44 21.66 7.51 87.66 0.66 22.32 16 19 O -0.61 -34.78 13.88 -3.08 -0.04 -34.82 16 20 N -0.57 -30.30 5.29 -306.99 -1.62 -31.92 16 21 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 25 Si 0.99 43.72 29.55 68.60 2.03 45.74 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 29 H 0.05 2.27 5.88 -2.39 -0.01 2.26 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 2.28 6.30 -2.38 -0.02 2.26 16 32 H 0.08 1.93 7.93 -2.39 -0.02 1.91 16 33 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.08 1.61 6.47 -2.39 -0.02 1.59 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 8.15 7.10 -92.71 -0.66 7.49 16 39 H 0.06 0.86 7.73 -2.38 -0.02 0.84 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.09 0.04 8.12 -2.39 -0.02 0.02 16 43 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 44 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.41 3.37 8.80 -92.71 -0.82 2.56 16 46 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 47 H 0.11 3.48 7.93 -2.39 -0.02 3.46 16 48 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 49 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -79.91 396.70 -2.90 -82.81 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -1.21 Total: 37.26 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 6.81 Total: 29.89 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -10.39 Total: -130.74 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -0.14 Total: -64.97 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.91 -2.90 -82.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264997914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.328 kcal (2) G-P(sol) polarization free energy of solvation -79.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds