Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00468 * 2 1 4 4 N 1.34782 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00111 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47115 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99861 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00046 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46970 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.35715 * 307.14949 * 11 10 9 13 13 C 1.54597 * 110.30558 * 69.29148 * 11 10 9 14 14 C 1.54940 * 102.92214 * 140.86956 * 13 11 10 15 15 N 1.48527 * 103.22612 * 322.58629 * 14 13 11 16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13 17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47896 * 105.82134 * 39.20939 * 15 14 13 29 29 H 1.08992 * 109.47237 * 240.00102 * 1 2 3 30 30 H 1.09006 * 109.46801 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46723 * 120.00140 * 1 2 3 32 32 H 0.97001 * 119.99751 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47085 * 60.00497 * 5 4 2 34 34 H 1.09003 * 109.47606 * 300.00248 * 5 4 2 35 35 H 0.97001 * 119.99823 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47179 * 60.00623 * 9 8 6 37 37 H 1.08992 * 109.47582 * 300.00171 * 9 8 6 38 38 H 1.09002 * 109.46473 * 60.00511 * 10 9 8 39 39 H 1.08992 * 109.47443 * 300.00576 * 10 9 8 40 40 H 1.09001 * 110.72499 * 259.22821 * 13 11 10 41 41 H 1.09008 * 110.72586 * 22.33599 * 13 11 10 42 42 H 1.09002 * 110.66618 * 204.14629 * 14 13 11 43 43 H 1.09002 * 110.66469 * 81.02379 * 14 13 11 44 44 H 1.09004 * 109.47131 * 292.60366 * 16 15 14 45 45 H 1.08994 * 109.47471 * 172.60116 * 16 15 14 46 46 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 47 47 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.92297 * 94.01998 * 28 15 14 49 49 H 1.09008 * 109.91662 * 215.11899 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1482 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4733 -2.8345 0.0019 9 6 5.9615 -4.2157 0.0024 10 6 7.4915 -4.2157 0.0029 11 6 8.0015 -5.6582 0.0040 12 1 7.5458 -6.2208 0.8187 13 6 7.6973 -6.3358 -1.3519 14 6 8.9713 -7.1784 -1.6117 15 7 10.0629 -6.3104 -1.1007 16 6 11.2707 -7.0964 -0.8153 17 6 11.6365 -7.9132 -2.0278 18 8 10.9582 -7.8468 -3.0311 19 7 12.7176 -8.7177 -1.9973 20 6 13.0506 -9.4603 -3.1004 21 1 12.4471 -9.4006 -3.9941 22 6 14.1684 -10.2853 -3.0709 23 7 14.4908 -10.9930 -4.1302 24 14 15.2129 -10.3881 -1.5256 25 1 14.6974 -11.4721 -0.6511 26 1 16.6205 -10.6797 -1.8980 27 1 15.1508 -9.0945 -0.7992 28 6 9.5360 -5.6826 0.1304 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0088 -0.6534 0.8911 34 1 4.0096 -0.6536 -0.8888 35 1 6.1036 -2.0972 0.0031 36 1 5.5989 -4.7295 -0.8879 37 1 5.5975 -4.7295 0.8920 38 1 7.8545 -3.7017 0.8929 39 1 7.8552 -3.7020 -0.8870 40 1 6.8197 -6.9775 -1.2741 41 1 7.5594 -5.5891 -2.1340 42 1 9.0969 -7.3672 -2.6778 43 1 8.9328 -8.1154 -1.0560 44 1 11.0807 -7.7616 0.0271 45 1 12.0922 -6.4238 -0.5691 46 1 13.2603 -8.7705 -1.1950 47 1 15.2709 -11.5692 -4.1095 48 1 9.8276 -6.2701 1.0010 49 1 9.9201 -4.6666 0.2228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567691077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -103.336475 kcal Electronic energy + Delta-G solvation = -28307.810661 eV Core-core repulsion = 24076.827054 eV Total energy + Delta-G solvation = -4230.983608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65705 -39.67935 -39.36359 -37.91794 -35.91160 -34.87818 -34.09112 -33.16862 -31.72764 -31.08026 -30.10322 -28.62506 -27.43734 -26.16424 -24.01031 -22.95755 -21.33433 -21.08745 -21.07753 -20.01772 -19.42675 -18.31438 -18.20496 -17.12611 -16.61656 -16.53968 -16.11875 -15.93724 -15.68863 -15.48899 -15.09816 -14.77805 -14.68889 -14.31061 -14.18646 -13.64551 -13.59520 -13.42422 -13.31626 -13.04999 -12.88351 -12.67427 -12.57843 -12.44862 -12.31068 -12.07663 -11.78657 -11.48780 -11.32111 -11.05980 -10.96652 -10.82247 -10.63492 -10.49225 -10.48370 -10.39751 -10.00126 -9.74617 -9.57422 -9.54889 -8.50081 -8.22413 -8.03016 -6.33954 -3.85424 2.01975 2.14579 2.30434 2.96751 3.00348 3.04355 3.12948 3.69839 4.05224 4.08009 4.09709 4.33213 4.36236 4.57764 4.62572 4.72226 4.74286 4.75114 4.84445 4.89244 5.00590 5.02433 5.18880 5.28325 5.33974 5.37157 5.42463 5.53205 5.56186 5.65830 5.69752 5.76762 5.79301 5.87826 5.89594 5.94215 5.97463 6.08812 6.29330 6.63675 6.90120 6.96865 7.15459 7.20264 7.55475 7.60292 7.68842 8.11919 8.56809 8.92254 9.39269 9.79661 10.79054 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.043530 B = 0.001382 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.079443 B =20261.531796 C =20475.878272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.721 5.721 5 C 0.098 3.902 6 C 0.508 3.492 7 O -0.538 6.538 8 N -0.723 5.723 9 C 0.118 3.882 10 C -0.120 4.120 11 C -0.094 4.094 12 H 0.075 0.925 13 C -0.123 4.123 14 C 0.036 3.964 15 N -0.496 5.496 16 C 0.033 3.967 17 C 0.451 3.549 18 O -0.562 6.562 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.043 3.957 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.038 3.962 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.413 0.587 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.042 0.958 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.311 18.308 14.422 31.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.377 5.377 5 C -0.030 4.030 6 C 0.293 3.707 7 O -0.415 6.415 8 N -0.375 5.375 9 C -0.005 4.005 10 C -0.158 4.158 11 C -0.114 4.114 12 H 0.094 0.906 13 C -0.161 4.161 14 C -0.091 4.091 15 N -0.220 5.220 16 C -0.098 4.098 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.228 5.228 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.090 4.090 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.579 18.642 13.243 31.442 hybrid contribution 1.111 -0.982 1.881 2.395 sum -20.468 17.660 15.124 30.977 Atomic orbital electron populations 1.21905 0.90964 1.05749 1.04636 1.20874 0.90870 0.82944 0.75268 1.90742 1.70881 1.31420 1.49555 1.45798 1.05894 1.10100 1.75940 1.21063 0.82651 0.94234 1.05031 1.20506 0.82888 0.91049 0.76223 1.90719 1.55160 1.45981 1.49650 1.45937 1.06668 1.09895 1.74997 1.21497 0.94420 0.81749 1.02864 1.21870 0.93244 0.97535 1.03156 1.21923 0.95453 0.95143 0.98872 0.90613 1.22695 0.98067 0.99334 0.96039 1.23494 0.88101 0.93180 1.04328 1.64608 1.03738 1.29294 1.24363 1.22135 0.94808 0.96301 0.96600 1.19628 0.83520 0.83582 0.89620 1.90480 1.52121 1.67906 1.33967 1.42202 1.25363 1.40296 1.14918 1.19436 1.11004 1.19302 0.93693 0.86235 1.25035 0.97138 0.96582 0.97303 1.69621 1.27080 1.27119 1.28204 0.86679 0.81027 0.78634 0.83108 1.19658 1.20122 1.19474 1.22988 0.93523 1.00431 0.92082 0.89146 0.88707 0.89101 0.74872 0.88267 0.88180 0.76076 0.90800 0.91311 0.91223 0.90377 0.91374 0.90692 0.86395 0.94628 0.93307 0.89177 0.79684 0.91585 0.93989 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.32 36.01 0.37 -0.26 16 2 C 0.51 3.84 7.94 -10.98 -0.09 3.75 16 3 O -0.55 -6.36 17.09 5.55 0.09 -6.26 16 4 N -0.72 -4.71 5.53 -61.47 -0.34 -5.05 16 5 C 0.10 0.59 6.15 -5.20 -0.03 0.56 16 6 C 0.51 3.83 7.90 -10.98 -0.09 3.74 16 7 O -0.54 -5.91 15.67 5.56 0.09 -5.82 16 8 N -0.72 -4.27 5.56 -60.30 -0.33 -4.61 16 9 C 0.12 0.85 5.54 -4.04 -0.02 0.83 16 10 C -0.12 -0.82 4.49 -26.73 -0.12 -0.94 16 11 C -0.09 -0.87 3.00 -89.26 -0.27 -1.14 16 12 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.12 -1.42 5.87 -24.87 -0.15 -1.56 16 14 C 0.04 0.57 5.30 -1.90 -0.01 0.56 16 15 N -0.50 -7.68 5.26 -231.89 -1.22 -8.90 16 16 C 0.03 0.55 5.52 -4.97 -0.03 0.53 16 17 C 0.45 10.05 7.49 -10.98 -0.08 9.97 16 18 O -0.56 -14.52 13.10 5.55 0.07 -14.45 16 19 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 20 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.51 13.96 55.50 0.77 -24.74 16 24 Si 0.88 19.16 27.74 -169.99 -4.72 14.44 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.35 6.51 56.52 0.37 -4.98 16 28 C 0.04 0.42 6.35 -2.76 -0.02 0.41 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.41 2.44 7.44 -40.82 -0.30 2.13 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.40 1.34 8.47 -40.82 -0.35 1.00 16 36 H 0.07 0.64 7.58 -51.93 -0.39 0.25 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.87 7.76 -51.92 -0.40 0.46 16 42 H 0.12 2.30 5.97 -51.93 -0.31 1.99 16 43 H 0.04 0.57 8.02 -51.93 -0.42 0.16 16 44 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.04 0.44 7.57 -51.93 -0.39 0.05 16 49 H 0.08 0.78 7.69 -51.92 -0.40 0.38 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -36.38 400.40 -8.18 -44.56 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.80 Total: 9.91 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.78 Total: 8.80 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.18 Total: -57.21 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.25 Total: -26.53 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.72 Total: 14.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.38 -8.18 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567691077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.776 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds