Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00468 * 2 1 4 4 N 1.34782 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00111 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47115 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99861 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00046 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46970 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.35715 * 307.14949 * 11 10 9 13 13 C 1.54597 * 110.30558 * 69.29148 * 11 10 9 14 14 C 1.54940 * 102.92214 * 140.86956 * 13 11 10 15 15 N 1.48527 * 103.22612 * 322.58629 * 14 13 11 16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13 17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47896 * 105.82134 * 39.20939 * 15 14 13 29 29 H 1.08992 * 109.47237 * 240.00102 * 1 2 3 30 30 H 1.09006 * 109.46801 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46723 * 120.00140 * 1 2 3 32 32 H 0.97001 * 119.99751 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47085 * 60.00497 * 5 4 2 34 34 H 1.09003 * 109.47606 * 300.00248 * 5 4 2 35 35 H 0.97001 * 119.99823 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47179 * 60.00623 * 9 8 6 37 37 H 1.08992 * 109.47582 * 300.00171 * 9 8 6 38 38 H 1.09002 * 109.46473 * 60.00511 * 10 9 8 39 39 H 1.08992 * 109.47443 * 300.00576 * 10 9 8 40 40 H 1.09001 * 110.72499 * 259.22821 * 13 11 10 41 41 H 1.09008 * 110.72586 * 22.33599 * 13 11 10 42 42 H 1.09002 * 110.66618 * 204.14629 * 14 13 11 43 43 H 1.09002 * 110.66469 * 81.02379 * 14 13 11 44 44 H 1.09004 * 109.47131 * 292.60366 * 16 15 14 45 45 H 1.08994 * 109.47471 * 172.60116 * 16 15 14 46 46 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 47 47 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.92297 * 94.01998 * 28 15 14 49 49 H 1.09008 * 109.91662 * 215.11899 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1482 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4733 -2.8345 0.0019 9 6 5.9615 -4.2157 0.0024 10 6 7.4915 -4.2157 0.0029 11 6 8.0015 -5.6582 0.0040 12 1 7.5458 -6.2208 0.8187 13 6 7.6973 -6.3358 -1.3519 14 6 8.9713 -7.1784 -1.6117 15 7 10.0629 -6.3104 -1.1007 16 6 11.2707 -7.0964 -0.8153 17 6 11.6365 -7.9132 -2.0278 18 8 10.9582 -7.8468 -3.0311 19 7 12.7176 -8.7177 -1.9973 20 6 13.0506 -9.4603 -3.1004 21 1 12.4471 -9.4006 -3.9941 22 6 14.1684 -10.2853 -3.0709 23 7 14.4908 -10.9930 -4.1302 24 14 15.2129 -10.3881 -1.5256 25 1 14.6974 -11.4721 -0.6511 26 1 16.6205 -10.6797 -1.8980 27 1 15.1508 -9.0945 -0.7992 28 6 9.5360 -5.6826 0.1304 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0088 -0.6534 0.8911 34 1 4.0096 -0.6536 -0.8888 35 1 6.1036 -2.0972 0.0031 36 1 5.5989 -4.7295 -0.8879 37 1 5.5975 -4.7295 0.8920 38 1 7.8545 -3.7017 0.8929 39 1 7.8552 -3.7020 -0.8870 40 1 6.8197 -6.9775 -1.2741 41 1 7.5594 -5.5891 -2.1340 42 1 9.0969 -7.3672 -2.6778 43 1 8.9328 -8.1154 -1.0560 44 1 11.0807 -7.7616 0.0271 45 1 12.0922 -6.4238 -0.5691 46 1 13.2603 -8.7705 -1.1950 47 1 15.2709 -11.5692 -4.1095 48 1 9.8276 -6.2701 1.0010 49 1 9.9201 -4.6666 0.2228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567691077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = -135.653686 kcal Electronic energy + Delta-G solvation = -28309.212041 eV Core-core repulsion = 24076.827054 eV Total energy + Delta-G solvation = -4232.384987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26422 -40.85706 -40.16219 -39.33894 -36.68612 -35.97468 -35.48633 -34.15539 -33.74787 -31.65744 -30.96111 -29.48274 -28.45321 -27.23122 -25.64541 -23.65756 -22.34890 -21.85425 -21.63240 -21.31488 -20.78191 -20.18657 -18.75106 -17.80546 -17.66553 -17.22538 -17.12380 -17.02948 -16.61817 -16.37336 -16.23175 -16.07840 -15.82437 -15.33732 -15.10071 -14.81894 -14.71950 -14.50378 -14.16029 -14.05365 -14.00270 -13.75124 -13.39542 -13.32673 -13.20454 -12.96748 -12.93330 -12.81571 -12.44260 -12.29256 -12.27746 -11.99371 -11.80406 -11.63761 -11.52223 -11.40340 -11.13800 -11.04966 -10.31852 -10.28127 -10.19377 -10.11262 -9.27694 -8.42196 -6.03054 1.29515 1.34497 1.43843 1.44003 1.59263 1.79475 1.93785 2.22211 2.47511 2.71990 3.14204 3.26048 3.57821 3.64795 3.79029 3.90850 3.93868 4.17138 4.24996 4.25630 4.30944 4.34900 4.37531 4.41851 4.51532 4.55382 4.65230 4.66931 4.68335 4.76752 4.84805 5.00948 5.05186 5.07623 5.11650 5.24587 5.27494 5.34084 5.39059 5.43373 5.52606 5.90661 5.97476 6.15023 6.41430 6.45993 6.58794 6.87819 7.08518 7.15578 7.38339 7.95927 8.75435 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.043530 B = 0.001382 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.079443 B =20261.531796 C =20475.878272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.718 5.718 5 C 0.099 3.901 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.711 5.711 9 C 0.121 3.879 10 C -0.108 4.108 11 C -0.086 4.086 12 H 0.091 0.909 13 C -0.115 4.115 14 C 0.034 3.966 15 N -0.517 5.517 16 C 0.044 3.956 17 C 0.447 3.553 18 O -0.606 6.606 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.055 0.945 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.231 1.231 28 C 0.038 3.962 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.417 0.583 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.419 0.581 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.058 0.942 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 19.955 18.563 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.374 5.374 5 C -0.029 4.029 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.363 5.363 9 C -0.002 4.002 10 C -0.146 4.146 11 C -0.105 4.105 12 H 0.109 0.891 13 C -0.153 4.153 14 C -0.093 4.093 15 N -0.241 5.241 16 C -0.087 4.087 17 C 0.235 3.765 18 O -0.490 6.490 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.073 0.927 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.089 4.089 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.137 0.863 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.402 20.312 17.405 34.257 hybrid contribution 0.961 -1.502 0.457 1.841 sum -20.441 18.810 17.862 33.026 Atomic orbital electron populations 1.21937 0.88062 1.06260 1.06418 1.21537 0.92310 0.82264 0.74067 1.90718 1.72055 1.32918 1.51985 1.45861 1.06237 1.10128 1.75133 1.21121 0.82560 0.93274 1.05895 1.20714 0.83027 0.91139 0.75476 1.90705 1.56159 1.47102 1.51549 1.45826 1.06508 1.10066 1.73948 1.21380 0.94753 0.82130 1.01947 1.21755 0.92555 0.96020 1.04233 1.21896 0.94583 0.96602 0.97441 0.89108 1.22615 0.96156 0.98875 0.97691 1.23281 0.90792 0.94005 1.01252 1.64579 1.03374 1.28875 1.27319 1.22098 0.96355 0.96563 0.93691 1.20909 0.81976 0.82638 0.90947 1.90497 1.53173 1.68857 1.36463 1.42033 1.26387 1.40490 1.14324 1.19006 1.11456 1.21721 0.93629 0.92680 1.26102 0.98146 0.95085 1.01888 1.69805 1.28090 1.28128 1.31487 0.85376 0.77876 0.80720 0.77629 1.18194 1.19995 1.15399 1.23121 0.94368 1.01057 0.90395 0.87161 0.88872 0.87328 0.74408 0.87113 0.87522 0.74340 0.92563 0.91527 0.88717 0.90663 0.90524 0.91157 0.91343 0.95510 0.90430 0.86280 0.77518 0.91145 0.92394 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.32 71.24 0.74 -0.23 16 2 C 0.51 7.19 7.94 87.66 0.70 7.89 16 3 O -0.60 -13.68 17.09 -3.04 -0.05 -13.74 16 4 N -0.72 -8.64 5.53 -466.79 -2.58 -11.22 16 5 C 0.10 1.06 6.15 85.63 0.53 1.59 16 6 C 0.51 6.98 7.90 87.66 0.69 7.67 16 7 O -0.58 -12.16 15.67 -3.03 -0.05 -12.21 16 8 N -0.71 -6.85 5.56 -463.06 -2.57 -9.42 16 9 C 0.12 1.48 5.54 86.38 0.48 1.96 16 10 C -0.11 -1.10 4.49 30.60 0.14 -0.96 16 11 C -0.09 -1.31 3.00 -9.91 -0.03 -1.34 16 12 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 13 C -0.12 -2.55 5.87 31.80 0.19 -2.37 16 14 C 0.03 1.10 5.30 86.65 0.46 1.56 16 15 N -0.52 -15.12 5.26 -887.56 -4.67 -19.79 16 16 C 0.04 1.36 5.52 85.56 0.47 1.83 16 17 C 0.45 20.16 7.49 87.66 0.66 20.81 16 18 O -0.61 -33.12 13.10 -3.07 -0.04 -33.16 16 19 N -0.59 -27.81 5.09 -306.97 -1.56 -29.37 16 20 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 21 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.93 -56.34 13.96 21.66 0.30 -56.04 16 24 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.72 6.51 99.48 0.65 -7.08 16 28 C 0.04 0.69 6.35 86.45 0.55 1.24 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.60 8.12 -2.38 -0.02 0.58 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.42 4.49 7.44 -92.71 -0.69 3.81 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.42 1.61 8.47 -92.71 -0.79 0.82 16 36 H 0.06 0.91 7.58 -2.39 -0.02 0.89 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.87 8.00 -2.39 -0.02 0.85 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.61 7.76 -2.38 -0.02 1.59 16 42 H 0.07 2.87 5.97 -2.39 -0.01 2.86 16 43 H 0.03 0.87 8.02 -2.39 -0.02 0.85 16 44 H 0.08 1.97 7.81 -2.38 -0.02 1.96 16 45 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 47 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 48 H 0.06 0.92 7.57 -2.39 -0.02 0.91 16 49 H 0.10 1.46 7.69 -2.38 -0.02 1.44 16 Total: -1.00 -87.34 400.40 -3.51 -90.85 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -1.08 Total: 32.72 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 6.88 Total: 20.95 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -11.08 Total: -125.85 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -0.14 Total: -59.10 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -87.34 -3.51 -90.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567691077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.801 kcal (2) G-P(sol) polarization free energy of solvation -87.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds