Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99806 * 2 1 4 4 O 1.21288 * 120.00033 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00078 * 0.02562 * 3 2 1 6 6 H 1.08993 * 109.50394 * 54.91661 * 5 3 2 7 7 C 1.53094 * 109.50592 * 294.78212 * 5 3 2 8 8 N 1.47014 * 109.29450 * 183.24044 * 7 5 3 9 9 C 1.46898 * 111.03763 * 182.34845 * 8 7 5 10 10 C 1.47018 * 110.75310 * 58.54598 * 8 7 5 11 11 C 1.53095 * 109.29409 * 301.45410 * 10 8 7 12 12 O 1.43015 * 109.50736 * 174.99893 * 5 3 2 13 13 C 1.46503 * 120.00327 * 180.02562 * 2 1 3 14 14 C 1.53934 * 113.73209 * 36.72415 * 13 2 1 15 15 N 1.47955 * 86.18071 * 221.92318 * 14 13 2 16 16 C 1.46901 * 111.00194 * 137.58279 * 15 14 13 17 17 C 1.50696 * 109.47086 * 90.63996 * 16 15 14 18 18 O 1.21300 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00277 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00528 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99854 * 0.02562 * 20 19 17 22 22 C 1.38958 * 120.00392 * 179.97438 * 20 19 17 23 23 N 1.31404 * 119.99561 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47062 * 60.00593 * 24 22 20 26 26 H 1.48502 * 109.47036 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47335 * 300.00348 * 24 22 20 28 28 C 1.47959 * 90.76446 * 24.68943 * 15 14 13 29 29 H 1.09000 * 109.47217 * 89.99716 * 1 2 3 30 30 H 1.09002 * 109.46543 * 209.99651 * 1 2 3 31 31 H 1.08994 * 109.46769 * 329.99580 * 1 2 3 32 32 H 1.09006 * 109.50944 * 303.14954 * 7 5 3 33 33 H 1.08994 * 109.50547 * 63.28061 * 7 5 3 34 34 H 1.08992 * 109.47226 * 292.38165 * 9 8 7 35 35 H 1.09000 * 109.47117 * 52.38887 * 9 8 7 36 36 H 1.09002 * 109.47130 * 172.38210 * 9 8 7 37 37 H 1.09002 * 109.50864 * 181.49645 * 10 8 7 38 38 H 1.09003 * 109.50425 * 61.41284 * 10 8 7 39 39 H 1.08994 * 109.50879 * 176.75852 * 11 10 8 40 40 H 1.09001 * 109.51139 * 296.84757 * 11 10 8 41 41 H 1.08994 * 112.93942 * 168.43030 * 13 2 1 42 42 H 1.09002 * 113.75925 * 336.24253 * 14 13 2 43 43 H 1.09002 * 113.75958 * 107.60664 * 14 13 2 44 44 H 1.08997 * 109.47084 * 210.63729 * 16 15 14 45 45 H 1.08994 * 109.46875 * 330.64244 * 16 15 14 46 46 H 0.97004 * 120.00196 * 359.97438 * 19 17 16 47 47 H 0.97005 * 120.00321 * 179.97438 * 23 22 20 48 48 H 1.08995 * 113.75848 * 220.99273 * 28 15 14 49 49 H 1.09001 * 113.75870 * 89.62662 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.6923 2.4920 0.8416 7 6 0.6053 2.6128 -1.3093 8 7 -0.0654 3.9208 -1.3373 9 6 -0.8718 4.0738 -2.5556 10 6 0.9133 5.0108 -1.2129 11 6 1.6901 4.8462 0.0960 12 8 2.3095 3.5573 0.1180 13 6 2.1976 -1.2687 -0.0006 14 6 1.5292 -2.3696 -0.8437 15 7 1.8709 -3.2881 0.2648 16 6 0.7555 -4.1984 0.5571 17 6 0.9011 -5.4519 -0.2665 18 8 1.8418 -5.5753 -1.0223 19 7 -0.0138 -6.4361 -0.1633 20 6 0.1183 -7.5764 -0.9130 21 1 0.9559 -7.6862 -1.5860 22 6 -0.8248 -8.5913 -0.8062 23 7 -1.8435 -8.4579 0.0129 24 14 -0.6442 -10.1452 -1.8271 25 1 0.6396 -10.8117 -1.4912 26 1 -1.7721 -11.0651 -1.5321 27 1 -0.6570 -9.7939 -3.2698 28 6 1.8972 -2.1581 1.2194 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.2927 2.5389 -2.1520 33 1 -0.1398 1.8202 -1.3760 34 1 -0.2135 4.1289 -3.4225 35 1 -1.5390 3.2181 -2.6596 36 1 -1.4615 4.9881 -2.4885 37 1 0.3929 5.9686 -1.2093 38 1 1.6057 4.9760 -2.0541 39 1 2.4556 5.6191 0.1645 40 1 1.0056 4.9362 0.9394 41 1 3.2616 -1.1448 -0.2018 42 1 0.4574 -2.2274 -0.9816 43 1 2.0534 -2.5896 -1.7737 44 1 0.7650 -4.4563 1.6160 45 1 -0.1867 -3.7092 0.3106 46 1 -0.7659 -6.3378 0.4413 47 1 -2.5022 -9.1662 0.0873 48 1 2.7154 -2.2090 1.9378 49 1 0.9330 -1.9539 1.6850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569487510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -45.026047 kcal Electronic energy + Delta-G solvation = -30140.765387 eV Core-core repulsion = 25912.310309 eV Total energy + Delta-G solvation = -4228.455078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12759 -40.06883 -38.68198 -37.67048 -36.18896 -35.23271 -33.87994 -32.07398 -31.25528 -30.03224 -29.13059 -27.42469 -26.19692 -25.99416 -25.00892 -24.60191 -23.43365 -21.25633 -20.41565 -19.39972 -19.04652 -17.96247 -17.70965 -17.09499 -16.56482 -16.35935 -16.16895 -16.03969 -15.53279 -15.40220 -15.03223 -14.80825 -14.55486 -14.31880 -14.14766 -13.93917 -13.65175 -13.45059 -13.16234 -13.01602 -12.82893 -12.70228 -12.60565 -12.29119 -12.21816 -12.13621 -11.88855 -11.65235 -11.49822 -11.24002 -11.09028 -10.97789 -10.70177 -10.43996 -10.20732 -10.16372 -9.90750 -9.48845 -9.00088 -8.90285 -8.78878 -8.20003 -7.95870 -6.41446 -3.82064 2.25634 2.34756 3.20298 3.23172 3.25704 3.30332 3.45246 3.89745 3.95365 4.13488 4.22452 4.27400 4.39736 4.45463 4.51022 4.57709 4.69925 4.76198 4.81803 4.93121 4.95397 4.98331 5.02811 5.07504 5.16936 5.18830 5.25195 5.27959 5.32034 5.37147 5.40284 5.42063 5.60789 5.64228 5.72537 5.86053 6.03713 6.17136 6.27703 6.29656 6.33421 6.51779 6.61106 7.02763 7.12737 7.55332 7.88426 8.06243 8.62543 9.18887 9.54830 10.07462 10.76363 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.001973 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.105629 B =14188.156065 C =14832.451304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.603 5.603 3 C 0.523 3.477 4 O -0.512 6.512 5 C 0.080 3.920 6 H 0.093 0.907 7 C 0.021 3.979 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.013 3.987 11 C 0.062 3.938 12 O -0.356 6.356 13 C 0.118 3.882 14 C 0.003 3.997 15 N -0.444 5.444 16 C 0.013 3.987 17 C 0.445 3.555 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.013 4.013 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.096 0.904 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 27.822 1.252 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.308 3.692 4 O -0.386 6.386 5 C 0.018 3.982 6 H 0.111 0.889 7 C -0.107 4.107 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.115 4.115 11 C -0.015 4.015 12 O -0.274 6.274 13 C 0.014 3.986 14 C -0.127 4.127 15 N -0.166 5.166 16 C -0.119 4.119 17 C 0.230 3.770 18 O -0.457 6.457 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.939 27.150 1.139 27.190 hybrid contribution -1.280 -0.368 -0.703 1.506 sum -2.219 26.783 0.436 26.878 Atomic orbital electron populations 1.22016 0.79492 1.03803 1.02338 1.47842 1.06922 1.05493 1.73553 1.20071 0.87959 0.84461 0.76659 1.90742 1.13524 1.86825 1.47472 1.21921 0.90796 0.86889 0.98571 0.88900 1.22857 0.98153 0.92943 0.96789 1.62225 1.23667 1.01770 1.38808 1.22406 0.97253 1.03174 0.89588 1.22875 0.94440 0.95528 0.98680 1.22759 0.97327 0.85116 0.96260 1.88136 1.31816 1.13222 1.94186 1.23219 0.98850 0.80096 0.96406 1.24437 0.99856 0.90376 0.97997 1.68348 1.37300 1.08113 1.02848 1.22461 0.92903 0.95417 1.01099 1.19665 0.85226 0.85123 0.86945 1.90535 1.33044 1.80729 1.41391 1.41863 1.23647 1.15588 1.39322 1.19649 1.09839 0.93113 1.20168 0.88013 1.25249 0.95437 0.99635 0.97665 1.69598 1.12857 1.34922 1.37130 0.85920 0.77763 0.80697 0.79857 1.19882 1.21002 1.19945 1.24505 1.02106 0.90906 0.96755 0.91800 0.90357 0.90415 0.93118 0.88246 0.95188 0.90846 0.90805 0.89199 0.93539 0.87701 0.91911 0.85165 0.90885 0.88327 0.89262 0.92512 0.77581 0.91869 0.88603 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 7.52 59.85 0.45 0.91 16 2 N -0.60 -6.25 3.09 -175.28 -0.54 -6.80 16 3 C 0.52 6.41 7.10 -10.99 -0.08 6.33 16 4 O -0.51 -8.54 16.00 -14.28 -0.23 -8.77 16 5 C 0.08 0.77 2.40 -27.83 -0.07 0.70 16 6 H 0.09 0.73 7.13 -51.93 -0.37 0.36 16 7 C 0.02 0.17 4.64 -3.71 -0.02 0.15 16 8 N -0.54 -3.76 4.99 -242.60 -1.21 -4.97 16 9 C 0.02 0.13 9.63 60.06 0.58 0.71 16 10 C 0.01 0.08 5.66 -3.71 -0.02 0.06 16 11 C 0.06 0.44 7.01 37.21 0.26 0.71 16 12 O -0.36 -4.01 10.01 -55.06 -0.55 -4.56 16 13 C 0.12 1.48 4.39 -69.63 -0.31 1.17 16 14 C 0.00 0.04 7.37 -2.77 -0.02 0.02 16 15 N -0.44 -7.25 5.65 -239.92 -1.36 -8.61 16 16 C 0.01 0.23 5.28 -4.98 -0.03 0.20 16 17 C 0.45 10.54 7.83 -10.99 -0.09 10.45 16 18 O -0.57 -15.87 16.01 5.54 0.09 -15.78 16 19 N -0.57 -14.31 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.01 -0.16 7.47 -2.77 -0.02 -0.18 16 29 H 0.06 0.38 7.09 -51.93 -0.37 0.01 16 30 H 0.08 0.52 6.36 -51.93 -0.33 0.19 16 31 H 0.08 0.39 6.05 -51.93 -0.31 0.08 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.63 5.18 -51.93 -0.27 0.36 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.13 1.88 7.24 -51.93 -0.38 1.51 16 42 H 0.07 0.90 6.05 -51.93 -0.31 0.58 16 43 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 45 H 0.06 0.84 7.38 -51.93 -0.38 0.45 16 46 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -35.67 388.46 -9.45 -45.11 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.55 Total: 7.29 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 0.41 Total: 13.24 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -2.44 Total: -58.45 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.69 Total: -29.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.67 -9.45 -45.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569487510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.087 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds