Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99251 * 2 1 4 4 N 1.34768 * 120.00275 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00307 * 5.16857 * 4 2 1 6 6 C 1.46504 * 119.99987 * 185.16865 * 4 2 1 7 7 C 1.50699 * 109.47193 * 269.99840 * 6 4 2 8 8 O 1.21289 * 119.99657 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00062 * 179.97438 * 7 6 4 10 10 C 1.47419 * 125.64878 * 359.96299 * 9 7 6 11 11 C 1.54912 * 104.83050 * 204.16163 * 10 9 7 12 12 C 1.55396 * 101.66716 * 323.07076 * 11 10 9 13 13 C 1.47028 * 125.64880 * 179.97438 * 9 7 6 14 14 H 1.09001 * 109.88177 * 59.33156 * 13 9 7 15 15 C 1.52999 * 109.88287 * 298.32518 * 13 9 7 16 16 N 1.46903 * 109.47273 * 55.31454 * 15 13 9 17 17 C 1.46901 * 111.00328 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47198 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00028 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99547 * 180.27435 * 18 17 16 21 21 C 1.37098 * 119.99353 * 179.72691 * 20 18 17 22 22 H 1.07998 * 120.00473 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99571 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99843 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46929 * 89.99751 * 25 23 21 27 27 H 1.48498 * 109.47103 * 209.99656 * 25 23 21 28 28 H 1.48502 * 109.47029 * 329.99975 * 25 23 21 29 29 H 1.09000 * 109.46589 * 185.31191 * 1 2 3 30 30 H 1.09001 * 109.47133 * 305.30753 * 1 2 3 31 31 H 1.09004 * 109.47534 * 65.31470 * 1 2 3 32 32 H 1.09003 * 109.47100 * 275.19703 * 5 4 2 33 33 H 1.09002 * 109.47308 * 35.19304 * 5 4 2 34 34 H 1.08999 * 109.47554 * 155.19854 * 5 4 2 35 35 H 1.09002 * 109.47030 * 150.00174 * 6 4 2 36 36 H 1.08998 * 109.47178 * 30.00021 * 6 4 2 37 37 H 1.09003 * 110.36803 * 322.99492 * 10 9 7 38 38 H 1.08995 * 110.37070 * 85.21261 * 10 9 7 39 39 H 1.08998 * 111.00375 * 81.06435 * 11 10 9 40 40 H 1.09000 * 111.00482 * 204.87256 * 11 10 9 41 41 H 1.08997 * 110.69753 * 277.05295 * 12 11 10 42 42 H 1.09005 * 110.85155 * 153.69503 * 12 11 10 43 43 H 1.08998 * 109.47261 * 295.31452 * 15 13 9 44 44 H 1.08998 * 109.47319 * 175.31389 * 15 13 9 45 45 H 1.00902 * 110.99936 * 56.04082 * 16 15 13 46 46 H 1.09002 * 109.46982 * 59.99798 * 17 16 15 47 47 H 1.09004 * 109.46832 * 299.99976 * 17 16 15 48 48 H 0.96993 * 120.00197 * 359.72026 * 20 18 17 49 49 H 0.97004 * 119.99290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4530 -2.4332 -0.1154 6 6 3.6415 -1.1697 0.1138 7 6 4.2532 -1.1059 -1.2620 8 8 3.5393 -1.0622 -2.2416 9 7 5.5934 -1.0965 -1.4039 10 6 6.5741 -1.1434 -0.3042 11 6 7.8566 -0.5008 -0.8891 12 6 7.8275 -1.0185 -2.3540 13 6 6.3195 -1.0376 -2.6810 14 1 6.0459 -0.1314 -3.2214 15 6 5.9857 -2.2682 -3.5266 16 7 4.5298 -2.3649 -3.6973 17 6 4.1712 -3.5379 -4.5056 18 6 2.6735 -3.6040 -4.6581 19 8 1.9736 -2.7570 -4.1445 20 7 2.1114 -4.6072 -5.3612 21 6 0.7485 -4.6704 -5.4952 22 1 0.1253 -3.9162 -5.0379 23 6 0.1689 -5.7050 -6.2196 24 7 0.9273 -6.6224 -6.7765 25 14 -1.6882 -5.7916 -6.4017 26 1 -2.1020 -5.0425 -7.6152 27 1 -2.1074 -7.2105 -6.5289 28 1 -2.3314 -5.1907 -5.2056 29 1 -0.3632 -1.0233 0.0951 30 1 -0.3633 0.5940 0.8386 31 1 -0.3634 0.4292 -0.9338 32 1 1.1122 -2.7472 0.8712 33 1 0.5928 -2.2996 -0.7714 34 1 2.1124 -3.1950 -0.5314 35 1 3.9652 -2.0828 0.6134 36 1 3.9620 -0.3046 0.6943 37 1 6.2158 -0.5667 0.5485 38 1 6.7652 -2.1754 -0.0100 39 1 7.7966 0.5871 -0.8600 40 1 8.7447 -0.8551 -0.3658 41 1 8.2480 -2.0221 -2.4163 42 1 8.3575 -0.3351 -3.0176 43 1 6.3531 -3.1638 -3.0257 44 1 6.4608 -2.1775 -4.5034 45 1 4.1561 -1.5191 -4.1011 46 1 4.5260 -4.4422 -4.0110 47 1 4.6338 -3.4565 -5.4893 48 1 2.6712 -5.2843 -5.7723 49 1 0.5226 -7.3444 -7.2824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569531474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -67.390059 kcal Electronic energy + Delta-G solvation = -31483.959084 eV Core-core repulsion = 27254.534230 eV Total energy + Delta-G solvation = -4229.424854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.28026 -39.33441 -38.00747 -37.08535 -35.22005 -34.90305 -33.65554 -31.78923 -31.09870 -30.48093 -30.05054 -27.72406 -26.71930 -25.89035 -24.64767 -23.36101 -22.10231 -21.32357 -19.52366 -19.05725 -18.48389 -17.77345 -17.21592 -16.92869 -16.46301 -16.07370 -15.85526 -15.30728 -14.98187 -14.54133 -14.38433 -14.15332 -13.95747 -13.80504 -13.51488 -13.27255 -13.21428 -13.05841 -12.96793 -12.71314 -12.64775 -12.28682 -12.13092 -11.94615 -11.86357 -11.51026 -11.48099 -11.46152 -11.45122 -11.27690 -11.02473 -10.93385 -10.89139 -10.34171 -10.12745 -9.71970 -9.41818 -9.38438 -8.47067 -8.43534 -8.12525 -7.83383 -7.53168 -6.31984 -3.71651 2.66579 3.02311 3.21306 3.22751 3.30246 3.35922 3.39084 4.08471 4.18314 4.32345 4.36213 4.62078 4.71046 4.78604 5.01692 5.04686 5.17451 5.22904 5.28541 5.33258 5.34855 5.37140 5.38049 5.39796 5.48545 5.51635 5.55354 5.62350 5.65346 5.66916 5.70508 5.89027 5.90514 5.95830 6.11740 6.14046 6.16420 6.40243 6.44374 6.59399 7.46995 7.50599 7.63691 7.84696 8.05428 8.18864 8.29276 8.75607 8.79433 9.30073 9.68520 10.22815 10.86510 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010229 B = 0.003711 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.650848 B = 7542.821781 C = 9807.108112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.522 3.478 3 O -0.554 6.554 4 N -0.594 5.594 5 C 0.087 3.913 6 C 0.107 3.893 7 C 0.500 3.500 8 O -0.445 6.445 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.143 3.857 14 H 0.068 0.932 15 C 0.048 3.952 16 N -0.639 5.639 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.561 6.561 20 N -0.574 5.574 21 C -0.292 4.292 22 H 0.101 0.899 23 C 0.019 3.981 24 N -0.907 5.907 25 Si 0.927 3.073 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.359 0.641 46 H 0.076 0.924 47 H 0.033 0.967 48 H 0.390 0.610 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 7.502 15.157 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.311 3.689 3 O -0.432 6.432 4 N -0.327 5.327 5 C -0.056 4.056 6 C -0.020 4.020 7 C 0.285 3.715 8 O -0.312 6.312 9 N -0.357 5.357 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.164 4.164 13 C 0.039 3.961 14 H 0.086 0.914 15 C -0.083 4.083 16 N -0.277 5.277 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.443 6.443 20 N -0.212 5.212 21 C -0.422 4.422 22 H 0.119 0.881 23 C -0.182 4.182 24 N -0.549 5.549 25 Si 0.755 3.245 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.195 1.195 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.183 0.817 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.222 0.778 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.069 8.188 15.452 21.248 hybrid contribution -0.087 -0.637 -1.439 1.576 sum 11.982 7.551 14.013 19.924 Atomic orbital electron populations 1.21925 0.91690 1.04668 1.04996 1.20753 0.90689 0.82835 0.74575 1.90668 1.70808 1.31287 1.50455 1.47424 1.05322 1.07281 1.72657 1.21798 0.98252 0.84910 1.00611 1.21176 0.81485 1.04023 0.95359 1.20587 0.80606 0.78346 0.92005 1.90841 1.58574 1.43197 1.38610 1.48381 1.04686 1.76486 1.06195 1.22235 0.89079 1.00319 0.90744 1.22787 0.97422 1.00993 0.95780 1.22689 0.94612 1.02276 0.96834 1.21492 0.90725 0.97944 0.85947 0.91400 1.22441 0.90793 0.97685 0.97388 1.60691 1.07425 1.06198 1.53359 1.21709 0.95903 0.95554 0.95485 1.19865 0.88932 0.84451 0.83760 1.90581 1.63102 1.40405 1.50217 1.41885 1.07664 1.24427 1.47234 1.19660 0.82178 1.09963 1.30383 0.88144 1.25215 1.00184 0.95753 0.97033 1.69622 1.35724 1.14114 1.35420 0.85899 0.82685 0.77147 0.78778 1.20591 1.21062 1.19516 0.89962 0.89200 0.88580 0.92959 0.90265 0.90398 0.88495 0.88155 0.91061 0.91789 0.90691 0.90071 0.90401 0.90222 0.91512 0.95469 0.81689 0.90623 0.94916 0.77766 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.89 36.01 0.36 -1.71 16 2 C 0.52 8.20 7.76 -10.99 -0.09 8.11 16 3 O -0.55 -10.55 16.73 5.56 0.09 -10.46 16 4 N -0.59 -8.56 2.36 -182.95 -0.43 -8.99 16 5 C 0.09 1.13 9.66 59.85 0.58 1.71 16 6 C 0.11 1.38 4.83 -5.19 -0.03 1.36 16 7 C 0.50 7.88 7.46 -10.99 -0.08 7.80 16 8 O -0.45 -9.08 12.29 5.55 0.07 -9.01 16 9 N -0.62 -7.68 3.06 -163.02 -0.50 -8.18 16 10 C 0.10 0.82 6.69 -2.53 -0.02 0.81 16 11 C -0.13 -0.88 7.09 -24.45 -0.17 -1.05 16 12 C -0.13 -0.98 6.50 -24.77 -0.16 -1.14 16 13 C 0.14 1.69 3.29 -66.95 -0.22 1.47 16 14 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 15 C 0.05 0.64 5.30 -3.82 -0.02 0.62 16 16 N -0.64 -11.56 2.96 -115.06 -0.34 -11.90 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 18 C 0.44 11.01 7.82 -10.99 -0.09 10.92 16 19 O -0.56 -15.75 15.54 5.55 0.09 -15.66 16 20 N -0.57 -15.07 5.29 -10.96 -0.06 -15.12 16 21 C -0.29 -8.34 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.51 5.50 -17.46 -0.10 0.42 16 24 N -0.91 -25.31 13.05 55.50 0.72 -24.58 16 25 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.08 0.84 5.82 -51.93 -0.30 0.54 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.12 6.63 -51.93 -0.34 0.78 16 34 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.10 0.97 8.07 -51.93 -0.42 0.56 16 36 H 0.10 1.23 7.20 -51.93 -0.37 0.86 16 37 H 0.07 0.51 7.47 -51.93 -0.39 0.13 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.56 7.77 -51.93 -0.40 0.15 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 44 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.36 7.41 6.97 -39.29 -0.27 7.14 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.39 9.89 7.90 -40.82 -0.32 9.56 16 49 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -36.89 398.74 -7.40 -44.30 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -7.82 Total: 15.43 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: -0.21 Total: 21.70 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.61 Total: -68.78 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: 0.25 Total: -35.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.89 -7.40 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569531474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.092 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds