Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99251 * 2 1 4 4 N 1.34768 * 120.00275 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00307 * 5.16857 * 4 2 1 6 6 C 1.46504 * 119.99987 * 185.16865 * 4 2 1 7 7 C 1.50699 * 109.47193 * 269.99840 * 6 4 2 8 8 O 1.21289 * 119.99657 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00062 * 179.97438 * 7 6 4 10 10 C 1.47419 * 125.64878 * 359.96299 * 9 7 6 11 11 C 1.54912 * 104.83050 * 204.16163 * 10 9 7 12 12 C 1.55396 * 101.66716 * 323.07076 * 11 10 9 13 13 C 1.47028 * 125.64880 * 179.97438 * 9 7 6 14 14 H 1.09001 * 109.88177 * 59.33156 * 13 9 7 15 15 C 1.52999 * 109.88287 * 298.32518 * 13 9 7 16 16 N 1.46903 * 109.47273 * 55.31454 * 15 13 9 17 17 C 1.46901 * 111.00328 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47198 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00028 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99547 * 180.27435 * 18 17 16 21 21 C 1.37098 * 119.99353 * 179.72691 * 20 18 17 22 22 H 1.07998 * 120.00473 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99571 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99843 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46929 * 89.99751 * 25 23 21 27 27 H 1.48498 * 109.47103 * 209.99656 * 25 23 21 28 28 H 1.48502 * 109.47029 * 329.99975 * 25 23 21 29 29 H 1.09000 * 109.46589 * 185.31191 * 1 2 3 30 30 H 1.09001 * 109.47133 * 305.30753 * 1 2 3 31 31 H 1.09004 * 109.47534 * 65.31470 * 1 2 3 32 32 H 1.09003 * 109.47100 * 275.19703 * 5 4 2 33 33 H 1.09002 * 109.47308 * 35.19304 * 5 4 2 34 34 H 1.08999 * 109.47554 * 155.19854 * 5 4 2 35 35 H 1.09002 * 109.47030 * 150.00174 * 6 4 2 36 36 H 1.08998 * 109.47178 * 30.00021 * 6 4 2 37 37 H 1.09003 * 110.36803 * 322.99492 * 10 9 7 38 38 H 1.08995 * 110.37070 * 85.21261 * 10 9 7 39 39 H 1.08998 * 111.00375 * 81.06435 * 11 10 9 40 40 H 1.09000 * 111.00482 * 204.87256 * 11 10 9 41 41 H 1.08997 * 110.69753 * 277.05295 * 12 11 10 42 42 H 1.09005 * 110.85155 * 153.69503 * 12 11 10 43 43 H 1.08998 * 109.47261 * 295.31452 * 15 13 9 44 44 H 1.08998 * 109.47319 * 175.31389 * 15 13 9 45 45 H 1.00902 * 110.99936 * 56.04082 * 16 15 13 46 46 H 1.09002 * 109.46982 * 59.99798 * 17 16 15 47 47 H 1.09004 * 109.46832 * 299.99976 * 17 16 15 48 48 H 0.96993 * 120.00197 * 359.72026 * 20 18 17 49 49 H 0.97004 * 119.99290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4530 -2.4332 -0.1154 6 6 3.6415 -1.1697 0.1138 7 6 4.2532 -1.1059 -1.2620 8 8 3.5393 -1.0622 -2.2416 9 7 5.5934 -1.0965 -1.4039 10 6 6.5741 -1.1434 -0.3042 11 6 7.8566 -0.5008 -0.8891 12 6 7.8275 -1.0185 -2.3540 13 6 6.3195 -1.0376 -2.6810 14 1 6.0459 -0.1314 -3.2214 15 6 5.9857 -2.2682 -3.5266 16 7 4.5298 -2.3649 -3.6973 17 6 4.1712 -3.5379 -4.5056 18 6 2.6735 -3.6040 -4.6581 19 8 1.9736 -2.7570 -4.1445 20 7 2.1114 -4.6072 -5.3612 21 6 0.7485 -4.6704 -5.4952 22 1 0.1253 -3.9162 -5.0379 23 6 0.1689 -5.7050 -6.2196 24 7 0.9273 -6.6224 -6.7765 25 14 -1.6882 -5.7916 -6.4017 26 1 -2.1020 -5.0425 -7.6152 27 1 -2.1074 -7.2105 -6.5289 28 1 -2.3314 -5.1907 -5.2056 29 1 -0.3632 -1.0233 0.0951 30 1 -0.3633 0.5940 0.8386 31 1 -0.3634 0.4292 -0.9338 32 1 1.1122 -2.7472 0.8712 33 1 0.5928 -2.2996 -0.7714 34 1 2.1124 -3.1950 -0.5314 35 1 3.9652 -2.0828 0.6134 36 1 3.9620 -0.3046 0.6943 37 1 6.2158 -0.5667 0.5485 38 1 6.7652 -2.1754 -0.0100 39 1 7.7966 0.5871 -0.8600 40 1 8.7447 -0.8551 -0.3658 41 1 8.2480 -2.0221 -2.4163 42 1 8.3575 -0.3351 -3.0176 43 1 6.3531 -3.1638 -3.0257 44 1 6.4608 -2.1775 -4.5034 45 1 4.1561 -1.5191 -4.1011 46 1 4.5260 -4.4422 -4.0110 47 1 4.6338 -3.4565 -5.4893 48 1 2.6712 -5.2843 -5.7723 49 1 0.5226 -7.3444 -7.2824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569531474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = -94.787405 kcal Electronic energy + Delta-G solvation = -31485.147122 eV Core-core repulsion = 27254.534230 eV Total energy + Delta-G solvation = -4230.612892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36113 -40.45517 -39.93423 -38.18795 -36.51167 -36.27418 -35.64417 -33.20719 -32.75508 -31.46925 -31.12056 -28.76746 -28.22258 -26.96563 -26.28759 -24.62228 -23.20139 -22.05466 -21.02212 -20.52796 -19.86551 -19.54486 -18.36035 -18.07580 -17.67657 -17.36258 -17.07913 -16.81430 -16.31811 -16.25969 -15.86728 -15.62120 -15.15576 -14.98735 -14.79455 -14.65591 -14.36153 -14.06515 -13.98378 -13.89125 -13.68839 -13.54533 -13.45784 -13.33350 -13.05176 -13.00842 -12.91078 -12.74746 -12.52517 -12.43224 -12.39091 -12.12431 -12.03811 -11.88300 -11.56417 -11.45739 -10.96328 -10.63932 -10.20093 -9.95321 -9.58790 -9.47838 -8.84598 -8.43278 -5.91012 1.38238 1.40723 1.49811 1.53918 1.98366 2.07565 2.13141 2.30520 2.39330 3.02741 3.23838 3.56584 3.65300 3.69785 3.81782 3.96329 4.10092 4.19703 4.26165 4.29536 4.31843 4.36661 4.38099 4.44426 4.51114 4.55588 4.58091 4.61234 4.68456 4.70993 4.76105 4.88881 4.90409 5.01125 5.07176 5.14783 5.17450 5.35815 5.41461 5.42811 5.64964 5.96871 6.23824 6.33674 6.55151 6.66640 6.82712 7.11379 7.18117 7.62329 7.66719 8.20473 8.74805 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010229 B = 0.003711 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.650848 B = 7542.821781 C = 9807.108112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.597 6.597 4 N -0.596 5.596 5 C 0.091 3.909 6 C 0.106 3.894 7 C 0.489 3.511 8 O -0.504 6.504 9 N -0.618 5.618 10 C 0.092 3.908 11 C -0.123 4.123 12 C -0.115 4.115 13 C 0.138 3.862 14 H 0.043 0.957 15 C 0.049 3.951 16 N -0.647 5.647 17 C 0.061 3.939 18 C 0.440 3.560 19 O -0.598 6.598 20 N -0.581 5.581 21 C -0.326 4.326 22 H 0.076 0.924 23 C -0.016 4.016 24 N -0.925 5.925 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.341 0.659 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.392 0.608 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.457 6.446 16.542 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.479 6.479 4 N -0.327 5.327 5 C -0.051 4.051 6 C -0.021 4.021 7 C 0.275 3.725 8 O -0.376 6.376 9 N -0.356 5.356 10 C -0.030 4.030 11 C -0.160 4.160 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.061 0.939 15 C -0.080 4.080 16 N -0.283 5.283 17 C -0.072 4.072 18 C 0.227 3.773 19 O -0.482 6.482 20 N -0.219 5.219 21 C -0.456 4.456 22 H 0.094 0.906 23 C -0.215 4.215 24 N -0.567 5.567 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.163 0.837 46 H 0.111 0.889 47 H 0.066 0.934 48 H 0.226 0.774 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.611 7.085 16.862 22.799 hybrid contribution -0.454 -0.302 -1.864 1.942 sum 13.157 6.783 14.998 21.073 Atomic orbital electron populations 1.21953 0.89185 1.06232 1.05421 1.21420 0.92160 0.82564 0.73831 1.90631 1.71905 1.32667 1.52651 1.47584 1.06169 1.07379 1.71576 1.21823 0.97042 0.83825 1.02443 1.21354 0.80719 1.05801 0.94218 1.21125 0.81562 0.77488 0.92337 1.90829 1.60222 1.46186 1.40349 1.48471 1.04453 1.74801 1.07860 1.22558 0.88739 1.01843 0.89870 1.22799 0.97597 1.00740 0.94907 1.22679 0.91162 1.03626 0.97873 1.21612 0.93489 0.96001 0.85548 0.93870 1.22553 0.87989 0.99000 0.98498 1.60691 1.10339 1.04614 1.52660 1.21557 0.91656 0.97044 0.96921 1.20831 0.91245 0.83099 0.82131 1.90559 1.64759 1.41550 1.51339 1.41946 1.07137 1.25049 1.47815 1.19616 0.83295 1.10556 1.32098 0.90588 1.26013 1.04681 0.94826 0.95950 1.69689 1.37488 1.14281 1.35221 0.84948 0.77081 0.77786 0.78641 1.20016 1.19459 1.19542 0.88214 0.86812 0.89605 0.88764 0.92017 0.92204 0.85296 0.87538 0.89961 0.90068 0.91044 0.87085 0.88943 0.88978 0.90400 0.94285 0.83711 0.88895 0.93358 0.77424 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.89 71.24 0.70 -3.33 16 2 C 0.51 16.38 7.76 87.66 0.68 17.06 16 3 O -0.60 -23.55 16.73 -3.04 -0.05 -23.60 16 4 N -0.60 -17.28 2.36 -851.13 -2.01 -19.29 16 5 C 0.09 2.35 9.66 127.77 1.23 3.58 16 6 C 0.11 2.70 4.83 85.63 0.41 3.11 16 7 C 0.49 15.65 7.46 87.66 0.65 16.31 16 8 O -0.50 -21.61 12.29 -3.06 -0.04 -21.64 16 9 N -0.62 -14.87 3.06 -788.05 -2.41 -17.29 16 10 C 0.09 1.27 6.69 86.86 0.58 1.85 16 11 C -0.12 -1.22 7.09 32.07 0.23 -1.00 16 12 C -0.12 -1.46 6.50 31.87 0.21 -1.25 16 13 C 0.14 3.14 3.29 45.34 0.15 3.29 16 14 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 15 C 0.05 1.29 5.30 86.30 0.46 1.74 16 16 N -0.65 -23.81 2.96 -517.93 -1.54 -25.34 16 17 C 0.06 2.36 6.17 85.56 0.53 2.89 16 18 C 0.44 22.49 7.82 87.66 0.69 23.17 16 19 O -0.60 -35.24 15.54 -3.07 -0.05 -35.28 16 20 N -0.58 -31.34 5.29 -306.98 -1.62 -32.96 16 21 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 24 N -0.93 -51.41 13.05 21.67 0.28 -51.13 16 25 Si 0.99 44.03 29.55 68.60 2.03 46.05 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.10 1.98 5.82 -2.39 -0.01 1.97 16 30 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.80 6.63 -2.39 -0.02 1.79 16 34 H 0.06 1.76 8.03 -2.39 -0.02 1.74 16 35 H 0.13 2.36 8.07 -2.39 -0.02 2.34 16 36 H 0.11 2.57 7.20 -2.39 -0.02 2.55 16 37 H 0.08 0.98 7.47 -2.39 -0.02 0.96 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.96 7.77 -2.39 -0.02 0.94 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.08 1.85 8.03 -2.39 -0.02 1.83 16 44 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.34 14.82 6.97 -89.69 -0.63 14.19 16 46 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.39 20.29 7.90 -92.71 -0.73 19.56 16 49 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -84.56 398.74 2.01 -82.55 By element: Atomic # 1 Polarization: 49.63 SS G_CDS: -0.38 Total: 49.24 kcal Atomic # 6 Polarization: 40.89 SS G_CDS: 7.80 Total: 48.69 kcal Atomic # 7 Polarization: -138.71 SS G_CDS: -7.30 Total: -146.01 kcal Atomic # 8 Polarization: -80.39 SS G_CDS: -0.14 Total: -80.53 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.56 2.01 -82.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569531474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.238 kcal (2) G-P(sol) polarization free energy of solvation -84.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds