Wall clock time and date at job start Sat Apr 11 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00303 * 2 1 4 4 O 1.21282 * 120.00472 * 179.72078 * 3 2 1 5 5 C 1.50703 * 119.99918 * 359.97438 * 3 2 1 6 6 C 1.50704 * 109.47067 * 180.02562 * 5 3 2 7 7 N 1.34781 * 119.99671 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00095 * 359.97438 * 6 5 3 9 9 C 1.46503 * 119.99901 * 179.97438 * 2 1 3 10 10 C 1.52999 * 109.46930 * 125.87213 * 9 2 1 11 11 C 1.53005 * 109.47213 * 300.00280 * 10 9 2 12 12 C 1.52996 * 109.46764 * 299.99773 * 11 10 9 13 13 N 1.46903 * 109.47093 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99570 * 85.00193 * 13 12 11 15 15 C 1.50702 * 109.47018 * 180.02562 * 14 13 12 16 16 O 1.21291 * 120.00087 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00110 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00289 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99766 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99909 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00256 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47173 * 90.00063 * 22 20 18 24 24 H 1.48494 * 109.47648 * 210.00514 * 22 20 18 25 25 H 1.48500 * 109.47144 * 330.00526 * 22 20 18 26 26 C 1.53000 * 109.46994 * 60.00526 * 12 11 10 27 27 C 1.52995 * 109.47006 * 5.87386 * 9 2 1 28 28 H 1.09009 * 109.46365 * 84.07761 * 1 2 3 29 29 H 1.08993 * 109.47618 * 204.07565 * 1 2 3 30 30 H 1.08994 * 109.47116 * 324.08624 * 1 2 3 31 31 H 1.08996 * 109.47478 * 300.00157 * 5 3 2 32 32 H 1.09001 * 109.47415 * 60.00310 * 5 3 2 33 33 H 0.97000 * 120.00147 * 359.97438 * 7 6 5 34 34 H 0.96995 * 119.99707 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47272 * 245.87029 * 9 2 1 36 36 H 1.09005 * 109.47397 * 60.00116 * 10 9 2 37 37 H 1.08998 * 109.47261 * 180.02562 * 10 9 2 38 38 H 1.09001 * 109.46875 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47009 * 59.99844 * 11 10 9 40 40 H 1.08998 * 109.47912 * 300.00001 * 12 11 10 41 41 H 1.00897 * 111.00171 * 321.05230 * 13 12 11 42 42 H 1.09004 * 109.47385 * 299.99924 * 14 13 12 43 43 H 1.08994 * 109.47449 * 60.00401 * 14 13 12 44 44 H 0.96999 * 120.00257 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99736 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47321 * 179.97438 * 26 12 11 47 47 H 1.08998 * 109.47614 * 59.99418 * 26 12 11 48 48 H 1.08998 * 109.47068 * 179.97438 * 27 9 2 49 49 H 1.09001 * 109.47257 * 300.00040 * 27 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 7 1.9155 4.8884 -0.0011 8 8 3.5571 3.3961 -0.0005 9 6 2.1975 -1.2688 0.0006 10 6 3.1845 -1.2883 -1.1683 11 6 2.4188 -1.1419 -2.4849 12 6 1.4312 -2.3011 -2.6320 13 7 0.6956 -2.1603 -3.8957 14 6 1.4505 -2.7448 -5.0121 15 6 0.6667 -2.5813 -6.2888 16 8 -0.4143 -2.0315 -6.2706 17 7 1.1672 -3.0451 -7.4511 18 6 0.4538 -2.8968 -8.6124 19 1 -0.5091 -2.4080 -8.5960 20 6 0.9697 -3.3754 -9.8106 21 7 0.2861 -3.2328 -10.9239 22 14 2.6355 -4.2202 -9.8391 23 1 2.4549 -5.6781 -9.6216 24 1 3.2835 -3.9927 -11.1557 25 1 3.4923 -3.6615 -8.7626 26 6 0.4441 -2.2815 -1.4631 27 6 1.2098 -2.4279 -0.1465 28 1 -0.3632 0.1060 -1.0223 29 1 -0.3634 -0.9382 0.4192 30 1 -0.3633 0.8323 0.6028 31 1 0.7591 2.5299 -0.8908 32 1 0.7585 2.5303 0.8892 33 1 0.9619 5.0657 -0.0012 34 1 2.5459 5.6256 -0.0018 35 1 2.7430 -1.3730 0.9385 36 1 3.8882 -0.4624 -1.0636 37 1 3.7292 -2.2324 -1.1682 38 1 3.1220 -1.1563 -3.3176 39 1 1.8738 -0.1980 -2.4852 40 1 1.9761 -3.2451 -2.6316 41 1 0.4712 -1.1936 -4.0778 42 1 2.4100 -2.2364 -5.1077 43 1 1.6185 -3.8048 -4.8218 44 1 2.0319 -3.4844 -7.4658 45 1 0.6465 -3.5666 -11.7603 46 1 -0.2599 -3.1071 -1.5681 47 1 -0.1009 -1.3376 -1.4634 48 1 1.7548 -3.3718 -0.1466 49 1 0.5066 -2.4140 0.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570659104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:37 Heat of formation + Delta-G solvation = -86.790338 kcal Electronic energy + Delta-G solvation = -30506.117275 eV Core-core repulsion = 26275.851162 eV Total energy + Delta-G solvation = -4230.266114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10658 -39.66984 -38.53648 -37.79786 -35.71560 -34.12113 -33.92700 -33.41479 -31.65648 -31.30157 -30.70939 -29.15371 -27.05616 -25.87096 -23.77545 -22.81169 -22.48904 -21.23456 -20.33175 -19.38270 -18.98551 -18.30637 -17.64983 -17.58107 -16.72029 -16.45551 -16.02968 -15.81626 -15.48061 -15.16367 -14.84448 -14.73742 -14.36334 -14.29346 -14.00510 -13.65252 -13.55568 -13.27577 -13.06937 -12.83708 -12.78062 -12.52379 -12.41469 -12.25973 -12.19493 -12.00443 -11.92600 -11.72302 -11.18930 -11.14101 -10.73306 -10.58459 -10.56104 -10.46301 -10.20126 -9.98225 -9.96525 -9.56076 -9.47090 -8.80009 -8.55756 -8.17445 -8.04538 -6.30290 -3.81513 2.30747 2.50587 2.54959 3.04178 3.08207 3.16207 3.28235 3.75988 4.04995 4.08341 4.12272 4.46036 4.57012 4.58813 4.68789 4.73621 4.84893 4.85757 4.93251 5.04881 5.08675 5.13573 5.22843 5.27522 5.31878 5.38295 5.47557 5.48958 5.62666 5.66786 5.83197 5.91797 5.94459 5.99284 6.03262 6.07245 6.19977 6.27745 6.44412 6.47643 6.93992 7.14761 7.18589 7.59551 7.62951 7.93190 8.09423 8.15586 8.61084 8.95975 9.43756 9.84273 10.82880 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.002351 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.944261 B =11908.664808 C =12607.040411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.610 5.610 3 C 0.513 3.487 4 O -0.491 6.491 5 C -0.168 4.168 6 C 0.515 3.485 7 N -0.861 5.861 8 O -0.497 6.497 9 C 0.155 3.845 10 C -0.137 4.137 11 C -0.142 4.142 12 C 0.088 3.912 13 N -0.663 5.663 14 C 0.048 3.952 15 C 0.451 3.549 16 O -0.566 6.566 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.126 4.126 27 C -0.126 4.126 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 8.702 27.387 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.346 5.346 3 C 0.298 3.702 4 O -0.364 6.364 5 C -0.210 4.210 6 C 0.297 3.703 7 N -0.427 5.427 8 O -0.369 6.369 9 C 0.052 3.948 10 C -0.176 4.176 11 C -0.182 4.182 12 C -0.022 4.022 13 N -0.293 5.293 14 C -0.085 4.085 15 C 0.237 3.763 16 O -0.448 6.448 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.164 4.164 27 C -0.164 4.164 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.596 8.103 27.237 28.462 hybrid contribution 1.576 0.353 -0.486 1.687 sum 3.172 8.456 26.751 28.234 Atomic orbital electron populations 1.22182 0.79995 1.03579 1.02061 1.47876 1.06687 1.05581 1.74446 1.19854 0.88081 0.84442 0.77777 1.90807 1.13006 1.86201 1.46375 1.21658 0.99703 0.93129 1.06558 1.20027 0.89575 0.84032 0.76684 1.43868 1.11834 1.07623 1.79351 1.90915 1.16166 1.83876 1.45916 1.21011 0.92728 0.82287 0.98727 1.21963 0.98474 1.03603 0.93561 1.22194 0.98925 0.99480 0.97570 1.21616 0.92859 0.97772 0.89963 1.60208 1.44124 1.24531 1.00468 1.21731 0.95006 1.00667 0.91118 1.19742 0.87976 0.84464 0.84166 1.90552 1.22178 1.46127 1.85921 1.42220 1.19470 1.53760 1.07650 1.19428 1.04381 1.36675 0.82830 0.86304 1.25040 0.98219 0.97840 0.95094 1.69624 1.38035 1.45838 0.98714 0.86670 0.83838 0.80455 0.78426 1.19589 1.20190 1.19521 1.21972 0.98099 1.04107 0.92181 1.21879 0.98321 0.97786 0.98404 0.91433 0.89587 0.91813 0.86011 0.86186 0.77272 0.76647 0.91081 0.89025 0.91342 0.92231 0.92145 0.90805 0.83213 0.93855 0.89585 0.79695 0.91633 0.90921 0.90033 0.90287 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 8.06 59.85 0.48 0.81 16 2 N -0.61 -5.00 2.28 -173.94 -0.40 -5.39 16 3 C 0.51 5.38 7.20 -10.99 -0.08 5.30 16 4 O -0.49 -7.54 11.89 -18.96 -0.23 -7.76 16 5 C -0.17 -1.08 4.82 -29.03 -0.14 -1.22 16 6 C 0.51 4.81 8.09 -10.98 -0.09 4.72 16 7 N -0.86 -4.20 8.87 31.22 0.28 -3.92 16 8 O -0.50 -7.63 15.02 -18.95 -0.28 -7.91 16 9 C 0.15 1.38 3.05 -67.93 -0.21 1.17 16 10 C -0.14 -1.49 5.14 -26.73 -0.14 -1.62 16 11 C -0.14 -1.65 5.01 -26.73 -0.13 -1.78 16 12 C 0.09 1.01 2.47 -67.71 -0.17 0.85 16 13 N -0.66 -10.06 5.87 -107.99 -0.63 -10.70 16 14 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 15 C 0.45 10.33 7.82 -10.98 -0.09 10.25 16 16 O -0.57 -15.21 15.78 5.55 0.09 -15.12 16 17 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 18 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 19 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 20 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 21 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 22 Si 0.88 19.64 27.73 -169.99 -4.71 14.93 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 26 C -0.13 -1.15 4.98 -26.73 -0.13 -1.28 16 27 C -0.13 -0.90 4.90 -26.73 -0.13 -1.03 16 28 H 0.07 0.37 6.49 -51.92 -0.34 0.03 16 29 H 0.09 0.38 5.26 -51.93 -0.27 0.10 16 30 H 0.06 0.17 6.69 -51.93 -0.35 -0.18 16 31 H 0.12 0.52 8.11 -51.93 -0.42 0.09 16 32 H 0.12 0.36 7.42 -51.93 -0.39 -0.02 16 33 H 0.40 0.54 8.83 -40.82 -0.36 0.18 16 34 H 0.40 1.83 8.93 -40.82 -0.36 1.47 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.25 5.77 -51.93 -0.30 0.95 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 39 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 40 H 0.07 0.85 7.80 -51.93 -0.41 0.44 16 41 H 0.35 5.58 8.17 -39.29 -0.32 5.25 16 42 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 43 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 44 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.70 3.95 -51.93 -0.21 0.49 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.40 6.67 -51.93 -0.35 0.05 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -39.44 378.90 -7.69 -47.12 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -7.13 Total: 13.45 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.10 Total: 9.12 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.03 Total: -59.54 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.42 Total: -30.80 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.44 -7.69 -47.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570659104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.665 kcal (2) G-P(sol) polarization free energy of solvation -39.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds