Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00303 * 2 1 4 4 O 1.21282 * 120.00472 * 179.72078 * 3 2 1 5 5 C 1.50703 * 119.99918 * 359.97438 * 3 2 1 6 6 C 1.50704 * 109.47067 * 180.02562 * 5 3 2 7 7 N 1.34781 * 119.99671 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00095 * 359.97438 * 6 5 3 9 9 C 1.46503 * 119.99901 * 179.97438 * 2 1 3 10 10 C 1.52999 * 109.46930 * 125.87213 * 9 2 1 11 11 C 1.53005 * 109.47213 * 300.00280 * 10 9 2 12 12 C 1.52996 * 109.46764 * 299.99773 * 11 10 9 13 13 N 1.46903 * 109.47093 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99570 * 85.00193 * 13 12 11 15 15 C 1.50702 * 109.47018 * 180.02562 * 14 13 12 16 16 O 1.21291 * 120.00087 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00110 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00289 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99766 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99909 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00256 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47173 * 90.00063 * 22 20 18 24 24 H 1.48494 * 109.47648 * 210.00514 * 22 20 18 25 25 H 1.48500 * 109.47144 * 330.00526 * 22 20 18 26 26 C 1.53000 * 109.46994 * 60.00526 * 12 11 10 27 27 C 1.52995 * 109.47006 * 5.87386 * 9 2 1 28 28 H 1.09009 * 109.46365 * 84.07761 * 1 2 3 29 29 H 1.08993 * 109.47618 * 204.07565 * 1 2 3 30 30 H 1.08994 * 109.47116 * 324.08624 * 1 2 3 31 31 H 1.08996 * 109.47478 * 300.00157 * 5 3 2 32 32 H 1.09001 * 109.47415 * 60.00310 * 5 3 2 33 33 H 0.97000 * 120.00147 * 359.97438 * 7 6 5 34 34 H 0.96995 * 119.99707 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47272 * 245.87029 * 9 2 1 36 36 H 1.09005 * 109.47397 * 60.00116 * 10 9 2 37 37 H 1.08998 * 109.47261 * 180.02562 * 10 9 2 38 38 H 1.09001 * 109.46875 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47009 * 59.99844 * 11 10 9 40 40 H 1.08998 * 109.47912 * 300.00001 * 12 11 10 41 41 H 1.00897 * 111.00171 * 321.05230 * 13 12 11 42 42 H 1.09004 * 109.47385 * 299.99924 * 14 13 12 43 43 H 1.08994 * 109.47449 * 60.00401 * 14 13 12 44 44 H 0.96999 * 120.00257 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99736 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47321 * 179.97438 * 26 12 11 47 47 H 1.08998 * 109.47614 * 59.99418 * 26 12 11 48 48 H 1.08998 * 109.47068 * 179.97438 * 27 9 2 49 49 H 1.09001 * 109.47257 * 300.00040 * 27 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 7 1.9155 4.8884 -0.0011 8 8 3.5571 3.3961 -0.0005 9 6 2.1975 -1.2688 0.0006 10 6 3.1845 -1.2883 -1.1683 11 6 2.4188 -1.1419 -2.4849 12 6 1.4312 -2.3011 -2.6320 13 7 0.6956 -2.1603 -3.8957 14 6 1.4505 -2.7448 -5.0121 15 6 0.6667 -2.5813 -6.2888 16 8 -0.4143 -2.0315 -6.2706 17 7 1.1672 -3.0451 -7.4511 18 6 0.4538 -2.8968 -8.6124 19 1 -0.5091 -2.4080 -8.5960 20 6 0.9697 -3.3754 -9.8106 21 7 0.2861 -3.2328 -10.9239 22 14 2.6355 -4.2202 -9.8391 23 1 2.4549 -5.6781 -9.6216 24 1 3.2835 -3.9927 -11.1557 25 1 3.4923 -3.6615 -8.7626 26 6 0.4441 -2.2815 -1.4631 27 6 1.2098 -2.4279 -0.1465 28 1 -0.3632 0.1060 -1.0223 29 1 -0.3634 -0.9382 0.4192 30 1 -0.3633 0.8323 0.6028 31 1 0.7591 2.5299 -0.8908 32 1 0.7585 2.5303 0.8892 33 1 0.9619 5.0657 -0.0012 34 1 2.5459 5.6256 -0.0018 35 1 2.7430 -1.3730 0.9385 36 1 3.8882 -0.4624 -1.0636 37 1 3.7292 -2.2324 -1.1682 38 1 3.1220 -1.1563 -3.3176 39 1 1.8738 -0.1980 -2.4852 40 1 1.9761 -3.2451 -2.6316 41 1 0.4712 -1.1936 -4.0778 42 1 2.4100 -2.2364 -5.1077 43 1 1.6185 -3.8048 -4.8218 44 1 2.0319 -3.4844 -7.4658 45 1 0.6465 -3.5666 -11.7603 46 1 -0.2599 -3.1071 -1.5681 47 1 -0.1009 -1.3376 -1.4634 48 1 1.7548 -3.3718 -0.1466 49 1 0.5066 -2.4140 0.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570659104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -120.714316 kcal Electronic energy + Delta-G solvation = -30507.588329 eV Core-core repulsion = 26275.851162 eV Total energy + Delta-G solvation = -4231.737168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82855 -40.53833 -40.14668 -38.77977 -36.72621 -35.95198 -34.74050 -34.32368 -33.74366 -32.06060 -31.46718 -30.02673 -28.11773 -27.01541 -25.37636 -23.62078 -23.26005 -22.04687 -21.37106 -20.99177 -20.27337 -19.64191 -18.27386 -18.18693 -17.89404 -17.31531 -17.11562 -16.75139 -16.62411 -16.30072 -16.25231 -15.80874 -15.60068 -15.18279 -14.97257 -14.80066 -14.62968 -14.37571 -14.30365 -14.18161 -13.83289 -13.63849 -13.36834 -13.29388 -13.10425 -12.91524 -12.85312 -12.78386 -12.60848 -12.42938 -12.01281 -11.99227 -11.53228 -11.50112 -11.33999 -11.28879 -10.96320 -10.58124 -10.43639 -10.27481 -10.25704 -9.47004 -9.24380 -8.42664 -6.03158 1.29155 1.33733 1.42517 1.66444 1.78931 1.93797 1.95908 2.21273 2.71283 2.76318 3.13513 3.39910 3.46549 3.79489 3.83473 3.99902 4.14221 4.16754 4.20838 4.25745 4.29276 4.39650 4.41952 4.45234 4.50288 4.53619 4.59358 4.61213 4.73468 4.77388 4.98592 5.00994 5.12990 5.18354 5.21148 5.29087 5.41187 5.46705 5.52767 5.79160 5.91331 5.95101 6.10807 6.40433 6.46299 6.57175 6.58487 6.86557 7.31487 7.38337 7.48666 7.94181 8.74874 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.002351 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.944261 B =11908.664808 C =12607.040411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.604 5.604 3 C 0.500 3.500 4 O -0.550 6.550 5 C -0.159 4.159 6 C 0.506 3.494 7 N -0.839 5.839 8 O -0.568 6.568 9 C 0.153 3.847 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.092 3.908 13 N -0.673 5.673 14 C 0.061 3.939 15 C 0.450 3.550 16 O -0.611 6.611 17 N -0.593 5.593 18 C -0.328 4.328 19 H 0.057 0.943 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.236 1.236 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.419 0.581 34 H 0.405 0.595 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.341 0.659 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 7.658 29.680 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.339 5.339 3 C 0.287 3.713 4 O -0.427 6.427 5 C -0.201 4.201 6 C 0.290 3.710 7 N -0.404 5.404 8 O -0.446 6.446 9 C 0.050 3.950 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.017 4.017 13 N -0.303 5.303 14 C -0.072 4.072 15 C 0.238 3.762 16 O -0.496 6.496 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.076 0.924 20 C -0.213 4.213 21 N -0.574 5.574 22 Si 0.783 3.217 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.160 4.160 27 C -0.151 4.151 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.167 0.833 32 H 0.180 0.820 33 H 0.251 0.749 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.160 0.840 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.757 7.082 29.568 30.455 hybrid contribution 1.338 0.791 -1.177 1.950 sum 3.096 7.872 28.391 29.625 Atomic orbital electron populations 1.22446 0.77694 1.05717 1.02749 1.47958 1.08021 1.04771 1.73152 1.20592 0.87763 0.86112 0.76813 1.90797 1.15644 1.87129 1.49089 1.21725 0.98940 0.89702 1.09729 1.20609 0.89127 0.85679 0.75557 1.43709 1.13176 1.06416 1.77135 1.90894 1.19124 1.85026 1.49522 1.20986 0.93003 0.83524 0.97457 1.21869 0.98491 1.02684 0.94112 1.22073 0.98522 0.99193 0.97397 1.21711 0.93204 0.97744 0.89035 1.60287 1.44820 1.24031 1.01184 1.21655 0.94573 1.02752 0.88199 1.20947 0.87585 0.82096 0.85587 1.90528 1.24549 1.47580 1.86902 1.42067 1.20004 1.54598 1.06769 1.19016 1.03316 1.37932 0.85430 0.92447 1.26085 1.03440 0.98003 0.93762 1.69799 1.40773 1.47033 0.99764 0.85389 0.77300 0.79489 0.79516 1.17980 1.19982 1.15906 1.21971 0.97604 1.04480 0.91922 1.21815 0.98102 0.97105 0.98067 0.91615 0.88385 0.88657 0.83290 0.81955 0.74875 0.76388 0.91552 0.92264 0.90473 0.93801 0.93077 0.90077 0.84030 0.91726 0.86891 0.77602 0.91127 0.91148 0.89350 0.89514 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 8.06 127.77 1.03 1.38 16 2 N -0.60 -8.72 2.28 -822.61 -1.87 -10.59 16 3 C 0.50 10.12 7.20 87.66 0.63 10.75 16 4 O -0.55 -17.65 11.89 20.40 0.24 -17.41 16 5 C -0.16 -1.69 4.82 29.10 0.14 -1.55 16 6 C 0.51 9.17 8.09 87.66 0.71 9.88 16 7 N -0.84 -6.86 8.87 -173.53 -1.54 -8.40 16 8 O -0.57 -18.32 15.02 20.43 0.31 -18.01 16 9 C 0.15 2.47 3.05 44.99 0.14 2.61 16 10 C -0.13 -2.82 5.14 30.60 0.16 -2.66 16 11 C -0.13 -2.95 5.01 30.59 0.15 -2.80 16 12 C 0.09 1.92 2.47 44.91 0.11 2.03 16 13 N -0.67 -19.35 5.87 -495.58 -2.91 -22.26 16 14 C 0.06 1.91 5.97 85.56 0.51 2.42 16 15 C 0.45 20.55 7.82 87.66 0.69 21.24 16 16 O -0.61 -33.79 15.78 -3.06 -0.05 -33.84 16 17 N -0.59 -28.45 5.09 -306.98 -1.56 -30.01 16 18 C -0.33 -19.37 10.16 84.04 0.85 -18.52 16 19 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 21 N -0.93 -56.55 13.96 21.67 0.30 -56.25 16 22 Si 0.96 39.48 27.73 68.60 1.90 41.39 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.24 -8.29 6.52 99.48 0.65 -7.64 16 26 C -0.12 -1.87 4.98 30.60 0.15 -1.71 16 27 C -0.11 -1.25 4.90 30.59 0.15 -1.10 16 28 H 0.07 0.50 6.49 -2.38 -0.02 0.49 16 29 H 0.10 0.43 5.26 -2.39 -0.01 0.42 16 30 H 0.10 0.04 6.69 -2.39 -0.02 0.03 16 31 H 0.15 0.77 8.11 -2.39 -0.02 0.75 16 32 H 0.16 0.28 7.42 -2.39 -0.02 0.26 16 33 H 0.42 -0.04 8.83 -92.71 -0.82 -0.86 16 34 H 0.41 3.32 8.93 -92.71 -0.83 2.49 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.71 5.77 -2.38 -0.01 1.69 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.09 7.45 -2.39 -0.02 1.08 16 39 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 40 H 0.08 1.60 7.80 -2.39 -0.02 1.58 16 41 H 0.34 10.67 8.17 -89.70 -0.73 9.94 16 42 H 0.06 1.81 7.44 -2.39 -0.02 1.79 16 43 H 0.11 3.02 8.06 -2.39 -0.02 3.00 16 44 H 0.39 15.62 5.76 -92.71 -0.53 15.09 16 45 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.09 1.25 3.95 -2.39 -0.01 1.24 16 48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.10 0.66 6.67 -2.39 -0.02 0.64 16 Total: -1.00 -95.71 378.90 -1.22 -96.93 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -1.93 Total: 36.81 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 5.89 Total: 21.65 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -7.58 Total: -127.51 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: 0.50 Total: -69.26 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.39 kcal Total: -95.71 -1.22 -96.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570659104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.783 kcal (2) G-P(sol) polarization free energy of solvation -95.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds