Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00096 * 2 1 4 4 N 1.34774 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00072 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47289 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99926 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.63187 * 359.72356 * 8 6 5 10 10 C 1.53621 * 108.54522 * 126.36578 * 9 8 6 11 11 C 1.53038 * 109.23993 * 54.85498 * 10 9 8 12 12 N 1.46902 * 109.46142 * 178.49020 * 11 10 9 13 13 C 1.46905 * 110.99736 * 59.02121 * 12 11 10 14 14 C 1.46895 * 111.00177 * 295.07161 * 12 11 10 15 15 C 1.50702 * 109.47417 * 189.99768 * 14 12 11 16 16 O 1.21294 * 119.99812 * 0.02562 * 15 14 12 17 17 N 1.34773 * 120.00339 * 179.97438 * 15 14 12 18 18 C 1.37092 * 120.00101 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00067 * 359.97438 * 18 17 15 20 20 C 1.38958 * 119.99819 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99921 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99786 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47127 * 90.00126 * 22 20 18 24 24 H 1.48498 * 109.47204 * 210.00127 * 22 20 18 25 25 H 1.48498 * 109.47219 * 330.00252 * 22 20 18 26 26 C 1.53042 * 109.53856 * 298.51147 * 11 10 9 27 27 C 1.46921 * 120.62916 * 180.02562 * 8 6 5 28 28 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47795 * 300.00019 * 1 2 3 30 30 H 1.09005 * 109.46872 * 60.00222 * 1 2 3 31 31 H 0.97001 * 120.00676 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47060 * 300.00359 * 5 4 2 33 33 H 1.09004 * 109.47073 * 59.99848 * 5 4 2 34 34 H 1.08999 * 109.58555 * 246.19992 * 9 8 6 35 35 H 1.09001 * 109.58897 * 6.62701 * 9 8 6 36 36 H 1.08998 * 109.63687 * 294.86823 * 10 9 8 37 37 H 1.09002 * 109.43660 * 174.72243 * 10 9 8 38 38 H 1.08998 * 109.46553 * 58.53365 * 11 10 9 39 39 H 1.08998 * 109.46984 * 60.00359 * 13 12 11 40 40 H 1.08998 * 109.47075 * 180.02562 * 13 12 11 41 41 H 1.08996 * 109.47211 * 299.99872 * 13 12 11 42 42 H 1.09000 * 109.46878 * 309.99653 * 14 12 11 43 43 H 1.09001 * 109.47349 * 69.99563 * 14 12 11 44 44 H 0.96998 * 119.99763 * 359.97438 * 17 15 14 45 45 H 0.97007 * 119.99822 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.49566 * 301.40924 * 26 11 10 47 47 H 1.09007 * 109.52204 * 181.33672 * 26 11 10 48 48 H 1.09003 * 109.58669 * 353.37467 * 27 8 6 49 49 H 1.08997 * 109.58998 * 113.65580 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1482 -2.5881 0.0022 7 8 3.3601 -3.5099 0.0021 8 7 5.4732 -2.8343 0.0024 9 6 6.4402 -1.7282 -0.0046 10 6 7.4130 -1.9222 1.1684 11 6 8.0473 -3.3117 1.0730 12 7 9.0057 -3.4887 2.1722 13 6 8.3449 -3.3399 3.4758 14 6 10.1326 -2.5552 2.0436 15 6 11.2065 -2.9246 3.0342 16 8 11.0489 -3.8727 3.7741 17 7 12.3426 -2.2022 3.0972 18 6 13.3197 -2.5387 3.9980 19 1 13.1790 -3.3824 4.6574 20 6 14.4913 -1.7942 4.0626 21 7 14.6622 -0.7673 3.2606 22 14 15.8224 -2.2522 5.2904 23 1 16.7630 -3.2159 4.6644 24 1 16.5628 -1.0307 5.6965 25 1 15.1998 -2.8742 6.4865 26 6 6.9561 -4.3802 1.1708 27 6 5.9782 -4.2141 0.0029 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6959 -2.0073 0.0013 32 1 4.0096 -0.6536 -0.8888 33 1 4.0089 -0.6532 0.8911 34 1 6.9918 -1.7311 -0.9447 35 1 5.9129 -0.7811 0.1091 36 1 6.8729 -1.8329 2.1108 37 1 8.1931 -1.1622 1.1221 38 1 8.5666 -3.4092 0.1196 39 1 7.5596 -4.0895 3.5727 40 1 9.0771 -3.4752 4.2718 41 1 7.9079 -2.3441 3.5500 42 1 10.5363 -2.6101 1.0327 43 1 9.7882 -1.5403 2.2427 44 1 12.4691 -1.4447 2.5048 45 1 15.4802 -0.2478 3.3054 46 1 6.4203 -4.2677 2.1134 47 1 7.4106 -5.3701 1.1267 48 1 5.1458 -4.9078 0.1217 49 1 6.4908 -4.4160 -0.9375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571328318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = -94.101209 kcal Electronic energy + Delta-G solvation = -29777.009082 eV Core-core repulsion = 25546.425945 eV Total energy + Delta-G solvation = -4230.583137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92968 -39.82313 -38.99564 -37.81262 -35.82393 -34.88566 -33.90192 -32.17843 -31.26978 -31.16254 -30.71261 -28.11779 -27.49952 -25.87704 -24.63106 -23.67330 -22.82611 -21.08434 -20.53697 -19.24598 -19.10245 -17.93880 -17.84265 -17.16623 -16.60325 -16.42518 -16.18115 -15.66125 -15.44082 -15.16287 -14.87030 -14.70888 -14.31153 -14.30045 -14.05785 -13.94341 -13.71007 -13.51184 -13.20077 -13.12299 -13.02125 -12.72041 -12.42109 -12.38593 -12.29732 -11.93687 -11.62242 -11.46520 -11.27585 -11.23790 -10.99886 -10.89247 -10.51803 -10.40639 -10.39168 -10.29317 -10.22896 -9.64048 -9.48775 -9.09391 -8.46578 -7.98933 -7.84008 -6.43205 -3.83885 2.08195 2.22312 2.31181 2.93594 3.16751 3.25567 3.31119 3.87604 3.89797 3.93920 4.21642 4.38703 4.45418 4.63369 4.69563 4.74581 4.80580 4.90334 4.91278 4.97832 4.99027 5.06680 5.16931 5.20304 5.27221 5.36955 5.38117 5.45737 5.57464 5.65340 5.69724 5.75238 5.82677 5.85580 5.93421 6.00449 6.10750 6.21261 6.26647 6.54939 6.89501 7.05065 7.24567 7.36308 7.53912 7.61591 7.77037 8.05101 8.60468 9.16965 9.53098 10.05034 10.74495 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.001896 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.542940 B =14765.101727 C =15491.900019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.719 5.719 5 C 0.098 3.902 6 C 0.512 3.488 7 O -0.542 6.542 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.174 4.174 11 C 0.084 3.916 12 N -0.509 5.509 13 C 0.017 3.983 14 C 0.045 3.955 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.125 4.125 27 C 0.113 3.887 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 0.539 -10.383 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.376 5.376 5 C -0.030 4.030 6 C 0.300 3.700 7 O -0.420 6.420 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.214 4.214 11 C -0.025 4.025 12 N -0.231 5.231 13 C -0.130 4.130 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.164 4.164 27 C -0.009 4.009 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.035 0.965 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.610 -0.206 -9.903 25.603 hybrid contribution 0.497 0.868 0.241 1.029 sum -23.113 0.662 -9.662 25.060 Atomic orbital electron populations 1.21830 0.91040 1.04511 1.05503 1.20866 0.90833 0.82996 0.75331 1.90748 1.70739 1.31381 1.49735 1.45909 1.05940 1.10035 1.75702 1.21123 0.82493 0.94490 1.04846 1.20453 0.82448 0.91006 0.76124 1.90684 1.54693 1.45969 1.50666 1.48098 1.05047 1.08230 1.72363 1.21915 0.90990 0.89110 0.99561 1.22778 0.99484 1.00254 0.98890 1.21777 0.92376 0.92394 0.95935 1.61830 1.07720 1.51444 1.02144 1.22598 0.99747 0.98247 0.92442 1.21875 0.92282 0.94121 1.00385 1.19746 0.84074 0.85965 0.87356 1.90489 1.79793 1.30364 1.45522 1.41864 1.14897 1.28550 1.34791 1.19695 0.94999 1.13778 1.14370 0.87929 1.25256 0.98683 0.95758 0.98240 1.69609 1.27907 1.18485 1.38326 0.85863 0.80289 0.77781 0.80385 1.20397 1.20955 1.19452 1.21990 0.95681 1.00339 0.98374 1.21707 0.98188 0.82119 0.98904 0.90345 0.88484 0.88521 0.74954 0.88286 0.88260 0.90372 0.89569 0.90751 0.89954 0.89809 0.92074 0.88689 0.96491 0.89478 0.93367 0.77531 0.91886 0.91188 0.89346 0.88688 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.39 36.00 0.37 -0.39 16 2 C 0.51 4.40 7.94 -10.99 -0.09 4.31 16 3 O -0.55 -6.99 17.10 5.55 0.09 -6.90 16 4 N -0.72 -5.62 5.53 -61.47 -0.34 -5.96 16 5 C 0.10 0.78 4.50 -5.19 -0.02 0.75 16 6 C 0.51 4.79 7.77 -10.98 -0.09 4.71 16 7 O -0.54 -6.48 15.08 5.56 0.08 -6.39 16 8 N -0.60 -5.11 2.97 -172.49 -0.51 -5.62 16 9 C 0.11 0.76 6.37 -3.49 -0.02 0.74 16 10 C -0.17 -1.60 4.67 -26.39 -0.12 -1.72 16 11 C 0.08 0.93 2.18 -67.67 -0.15 0.78 16 12 N -0.51 -7.79 4.49 -236.28 -1.06 -8.85 16 13 C 0.02 0.27 8.46 60.07 0.51 0.78 16 14 C 0.04 0.75 4.89 -4.98 -0.02 0.72 16 15 C 0.44 10.14 7.47 -10.99 -0.08 10.06 16 16 O -0.58 -15.20 13.91 5.55 0.08 -15.12 16 17 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 C -0.13 -1.25 5.11 -26.59 -0.14 -1.39 16 27 C 0.11 0.98 6.43 -3.69 -0.02 0.96 16 28 H 0.08 0.20 7.91 -51.93 -0.41 -0.21 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.41 2.87 7.27 -40.82 -0.30 2.58 16 32 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 33 H 0.10 0.78 7.70 -51.93 -0.40 0.38 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.50 5.93 -51.93 -0.31 0.19 16 36 H 0.07 0.76 6.47 -51.93 -0.34 0.42 16 37 H 0.08 0.76 6.69 -51.93 -0.35 0.42 16 38 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 39 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 40 H 0.09 1.84 5.82 -51.93 -0.30 1.53 16 41 H 0.02 0.23 6.31 -51.93 -0.33 -0.09 16 42 H 0.09 1.31 8.00 -51.93 -0.42 0.90 16 43 H 0.05 0.73 6.90 -51.93 -0.36 0.37 16 44 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.07 0.77 6.50 -51.93 -0.34 0.43 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 0.91 7.01 -51.93 -0.36 0.55 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -34.54 388.57 -7.58 -42.13 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.31 Total: 10.12 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.11 Total: 12.43 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -1.25 Total: -57.97 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: 0.26 Total: -28.41 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.54 -7.58 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571328318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.976 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds