Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00050 * 2 1 4 4 C 1.50699 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.99037 * 269.99530 * 4 3 2 6 6 N 1.39929 * 108.89896 * 179.97438 * 5 4 3 7 7 C 1.46504 * 125.75201 * 180.02562 * 6 5 4 8 8 C 1.34266 * 108.49528 * 359.75224 * 6 5 4 9 9 C 1.38044 * 107.41182 * 0.39444 * 8 6 5 10 10 C 1.47428 * 126.41373 * 179.87067 * 9 8 6 11 11 O 1.21605 * 120.00347 * 188.01371 * 10 9 8 12 12 N 1.34778 * 119.99984 * 8.01370 * 10 9 8 13 13 C 1.46503 * 119.99891 * 6.43220 * 12 10 9 14 14 C 1.46495 * 120.00023 * 186.42852 * 12 10 9 15 15 C 1.52996 * 109.47521 * 270.00212 * 14 12 10 16 16 H 1.09000 * 109.46847 * 304.99622 * 15 14 12 17 17 O 1.42893 * 109.47024 * 65.00059 * 15 14 12 18 18 C 1.53004 * 109.47122 * 185.00132 * 15 14 12 19 19 N 1.46505 * 109.46964 * 179.97438 * 18 15 14 20 20 C 1.46498 * 120.00091 * 270.00188 * 19 18 15 21 21 C 1.36938 * 119.99975 * 89.99652 * 19 18 15 22 22 H 1.07999 * 120.00241 * 329.59943 * 21 19 18 23 23 C 1.38811 * 119.99714 * 149.31687 * 21 19 18 24 24 N 1.31622 * 119.99697 * 168.49630 * 23 21 19 25 25 Si 1.86795 * 119.99994 * 348.49262 * 23 21 19 26 26 H 1.48497 * 109.47304 * 84.58152 * 25 23 21 27 27 H 1.48506 * 109.46917 * 204.57632 * 25 23 21 28 28 H 1.48496 * 109.47622 * 324.57578 * 25 23 21 29 29 H 1.09001 * 109.47869 * 300.00693 * 1 2 3 30 30 H 1.09004 * 109.47078 * 60.00604 * 1 2 3 31 31 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47772 * 59.99256 * 3 2 1 33 33 H 1.09006 * 109.46760 * 299.98883 * 3 2 1 34 34 H 1.08999 * 109.46921 * 89.98137 * 7 6 5 35 35 H 1.09005 * 109.46959 * 209.97710 * 7 6 5 36 36 H 1.08995 * 109.47253 * 329.97404 * 7 6 5 37 37 H 1.07995 * 126.29520 * 180.24510 * 8 6 5 38 38 H 1.09000 * 109.46627 * 272.26806 * 13 12 10 39 39 H 1.09001 * 109.47070 * 32.27037 * 13 12 10 40 40 H 1.09003 * 109.46965 * 152.27029 * 13 12 10 41 41 H 1.09001 * 109.47112 * 149.99752 * 14 12 10 42 42 H 1.09005 * 109.47231 * 30.00615 * 14 12 10 43 43 H 0.96694 * 114.00267 * 60.00479 * 17 15 14 44 44 H 1.08996 * 109.47063 * 60.00199 * 18 15 14 45 45 H 1.09000 * 109.46844 * 299.99493 * 18 15 14 46 46 H 1.08999 * 109.46949 * 275.19240 * 20 19 18 47 47 H 1.08996 * 109.47210 * 35.18654 * 20 19 18 48 48 H 1.09002 * 109.47209 * 155.19231 * 20 19 18 49 49 H 0.96994 * 119.99641 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2762 1.1262 1.0564 6 7 5.6097 1.0199 0.6458 7 6 6.7732 0.9272 1.5311 8 6 5.6425 1.0111 -0.6965 9 6 4.3406 1.1200 -1.1423 10 6 3.8968 1.1543 -2.5478 11 8 2.7356 1.3991 -2.8130 12 7 4.7782 0.9142 -3.5388 13 6 6.1407 0.4817 -3.2184 14 6 4.3736 1.0857 -4.9363 15 6 3.8063 -0.2318 -5.4685 16 1 4.5369 -1.0273 -5.3221 17 8 2.6052 -0.5523 -4.7639 18 6 3.4997 -0.0892 -6.9607 19 7 2.9571 -1.3510 -7.4704 20 6 3.8597 -2.3742 -8.0039 21 6 1.6062 -1.5740 -7.4481 22 1 0.9976 -1.1265 -6.6762 23 6 1.0181 -2.3706 -8.4209 24 7 -0.2275 -2.7716 -8.2787 25 14 1.9944 -2.8734 -9.9320 26 1 2.8012 -4.0807 -9.6209 27 1 1.0607 -3.1758 -11.0465 28 1 2.8973 -1.7637 -10.3299 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6887 1.8462 -0.8902 34 1 6.9799 -0.1201 1.7510 35 1 7.6389 1.3734 1.0414 36 1 6.5667 1.4596 2.4595 37 1 6.5254 0.9354 -1.3138 38 1 6.7733 1.3563 -3.0668 39 1 6.1269 -0.1189 -2.3089 40 1 6.5357 -0.1142 -4.0413 41 1 5.2391 1.3757 -5.5321 42 1 3.6113 1.8622 -5.0012 43 1 1.9092 0.1134 -4.8499 44 1 4.4159 0.1552 -7.4981 45 1 2.7692 0.7064 -7.1071 46 1 4.0729 -2.1602 -9.0512 47 1 4.7898 -2.3702 -7.4356 48 1 3.3879 -3.3534 -7.9218 49 1 -0.6382 -3.3285 -8.9583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571603133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = 10.922701 kcal Electronic energy + Delta-G solvation = -31005.603797 eV Core-core repulsion = 26779.574839 eV Total energy + Delta-G solvation = -4226.028958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73176 -39.37724 -37.69498 -37.13696 -35.44356 -34.55157 -33.82598 -31.58429 -31.20535 -29.52333 -29.03039 -27.39607 -26.83883 -26.17551 -25.56615 -24.78458 -22.60725 -21.71938 -20.56524 -20.40996 -19.36090 -17.15031 -16.84333 -16.56284 -16.50681 -16.12845 -15.77641 -15.63545 -15.47732 -15.30704 -15.16164 -14.69490 -14.32478 -14.12212 -13.86519 -13.66350 -13.43636 -13.16674 -13.09005 -12.80757 -12.59158 -12.43659 -12.31998 -12.26016 -12.05014 -11.82066 -11.51098 -11.31557 -11.16284 -10.98329 -10.48789 -10.47362 -10.12241 -9.90562 -9.83384 -9.70586 -9.56026 -9.42400 -9.36708 -8.84829 -8.63248 -8.28506 -6.73205 -5.78702 -3.22335 1.31827 1.88370 2.06886 3.05770 3.40813 3.51188 3.52369 3.56298 3.91928 4.18635 4.34775 4.63567 4.65984 4.70759 4.78643 4.90840 4.94334 4.95170 4.97889 5.13952 5.19101 5.26266 5.35280 5.41549 5.46702 5.49778 5.50679 5.56072 5.65539 5.75763 5.78370 5.83549 5.95266 6.04840 6.19991 6.28135 6.35480 6.49676 6.56642 6.67276 6.72011 6.79498 7.19930 7.32052 7.52991 8.13700 8.43152 8.51174 8.63213 9.09633 9.86124 10.18639 11.37793 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002953 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.759011 B = 9479.772599 C =10794.459327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.139 3.861 4 C 0.132 3.868 5 N -0.284 5.284 6 N -0.363 5.363 7 C 0.097 3.903 8 C 0.073 3.927 9 C -0.264 4.264 10 C 0.597 3.403 11 O -0.524 6.524 12 N -0.609 5.609 13 C 0.065 3.935 14 C 0.086 3.914 15 C 0.073 3.927 16 H 0.081 0.919 17 O -0.532 6.532 18 C 0.124 3.876 19 N -0.604 5.604 20 C 0.095 3.905 21 C -0.247 4.247 22 H 0.090 0.910 23 C 0.018 3.982 24 N -0.917 5.917 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.309 1.309 28 H -0.276 1.276 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.201 0.799 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.371 0.629 44 H 0.043 0.957 45 H 0.060 0.940 46 H 0.012 0.988 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.448 11.458 18.345 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.061 3.939 4 C -0.036 4.036 5 N -0.107 5.107 6 N -0.142 5.142 7 C -0.044 4.044 8 C -0.076 4.076 9 C -0.279 4.279 10 C 0.386 3.614 11 O -0.400 6.400 12 N -0.342 5.342 13 C -0.079 4.079 14 C -0.037 4.037 15 C 0.009 3.991 16 H 0.099 0.901 17 O -0.336 6.336 18 C -0.004 4.004 19 N -0.326 5.326 20 C -0.050 4.050 21 C -0.376 4.376 22 H 0.107 0.893 23 C -0.180 4.180 24 N -0.562 5.562 25 Si 0.734 3.266 26 H -0.218 1.218 27 H -0.238 1.238 28 H -0.202 1.202 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.217 0.783 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.218 0.782 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.030 0.970 47 H 0.046 0.954 48 H 0.078 0.922 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.290 10.775 19.648 28.303 hybrid contribution 0.444 0.117 -1.870 1.925 sum 17.734 10.892 17.778 27.371 Atomic orbital electron populations 1.22743 0.80235 1.03064 1.00035 1.87915 1.20124 1.26272 1.95472 1.20717 0.84715 0.86246 1.02228 1.21970 0.95757 0.96805 0.89044 1.77144 0.86475 1.24423 1.22692 1.48377 1.06291 1.54501 1.05046 1.21989 0.83776 1.03903 0.94710 1.24149 0.99881 0.98608 0.84989 1.20291 0.92086 1.20710 0.94796 1.17097 0.84864 0.76363 0.83102 1.90712 1.16789 1.48983 1.83481 1.47464 1.11854 1.68504 1.06375 1.22271 0.83533 0.99317 1.02751 1.22357 1.00843 1.00199 0.80331 1.22971 0.88142 0.94370 0.93567 0.90068 1.86602 1.24059 1.49834 1.73143 1.21417 0.97532 0.89569 0.91877 1.43931 1.03784 1.12493 1.72436 1.21520 0.93672 0.93809 0.96013 1.18966 0.81229 1.29260 1.08160 0.89293 1.25370 0.95282 0.99568 0.97782 1.69776 1.12959 1.38019 1.35404 0.86854 0.78051 0.78085 0.83657 1.21805 1.23773 1.20241 0.94410 0.93234 0.89423 0.92324 0.88942 0.90138 0.89058 0.88854 0.78298 0.92653 0.90450 0.90613 0.90323 0.89660 0.78237 0.93917 0.92189 0.96986 0.95386 0.92213 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.11 10.69 -35.23 -0.38 -6.49 16 3 C 0.14 1.98 6.06 36.01 0.22 2.20 16 4 C 0.13 1.93 6.89 -82.02 -0.57 1.36 16 5 N -0.28 -3.82 12.50 33.90 0.42 -3.39 16 6 N -0.36 -3.52 3.98 -67.59 -0.27 -3.79 16 7 C 0.10 0.42 11.44 59.85 0.68 1.11 16 8 C 0.07 0.70 9.37 -16.56 -0.16 0.54 16 9 C -0.26 -3.60 5.94 -105.06 -0.62 -4.22 16 10 C 0.60 9.18 7.36 -12.52 -0.09 9.09 16 11 O -0.52 -9.61 13.11 -8.78 -0.12 -9.73 16 12 N -0.61 -7.74 2.86 -182.85 -0.52 -8.27 16 13 C 0.06 0.52 8.70 59.85 0.52 1.04 16 14 C 0.09 1.14 5.09 -4.05 -0.02 1.12 16 15 C 0.07 1.26 3.48 -26.73 -0.09 1.17 16 16 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 17 O -0.53 -11.38 10.93 -49.29 -0.54 -11.92 16 18 C 0.12 2.36 5.41 -4.04 -0.02 2.34 16 19 N -0.60 -14.64 2.63 -181.12 -0.48 -15.12 16 20 C 0.09 2.13 8.35 59.85 0.50 2.63 16 21 C -0.25 -7.13 9.56 -15.06 -0.14 -7.28 16 22 H 0.09 2.76 7.53 -52.49 -0.40 2.37 16 23 C 0.02 0.53 5.35 -17.43 -0.09 0.44 16 24 N -0.92 -29.33 13.97 55.49 0.78 -28.55 16 25 Si 0.90 23.48 23.96 -169.99 -4.07 19.40 16 26 H -0.29 -7.31 6.54 56.52 0.37 -6.94 16 27 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.28 -6.98 6.31 56.52 0.36 -6.62 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.37 6.43 -51.93 -0.33 1.04 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.20 1.07 4.53 -52.49 -0.24 0.83 16 38 H 0.06 0.29 7.49 -51.93 -0.39 -0.10 16 39 H 0.08 0.59 5.09 -51.93 -0.26 0.33 16 40 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 41 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.09 1.21 7.52 -51.93 -0.39 0.82 16 43 H 0.37 7.71 8.57 45.56 0.39 8.10 16 44 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 45 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 46 H 0.01 0.28 5.23 -51.93 -0.27 0.01 16 47 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 48 H 0.06 1.46 5.82 -51.93 -0.30 1.16 16 49 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -39.97 390.57 -4.94 -44.91 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.88 Total: 3.96 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 1.23 Total: 13.10 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.07 Total: -59.12 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.03 Total: -28.14 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.07 Total: 19.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.97 -4.94 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571603133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.832 kcal (2) G-P(sol) polarization free energy of solvation -39.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds