Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00050 * 2 1 4 4 C 1.50699 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.99037 * 269.99530 * 4 3 2 6 6 N 1.39929 * 108.89896 * 179.97438 * 5 4 3 7 7 C 1.46504 * 125.75201 * 180.02562 * 6 5 4 8 8 C 1.34266 * 108.49528 * 359.75224 * 6 5 4 9 9 C 1.38044 * 107.41182 * 0.39444 * 8 6 5 10 10 C 1.47428 * 126.41373 * 179.87067 * 9 8 6 11 11 O 1.21605 * 120.00347 * 188.01371 * 10 9 8 12 12 N 1.34778 * 119.99984 * 8.01370 * 10 9 8 13 13 C 1.46503 * 119.99891 * 6.43220 * 12 10 9 14 14 C 1.46495 * 120.00023 * 186.42852 * 12 10 9 15 15 C 1.52996 * 109.47521 * 270.00212 * 14 12 10 16 16 H 1.09000 * 109.46847 * 304.99622 * 15 14 12 17 17 O 1.42893 * 109.47024 * 65.00059 * 15 14 12 18 18 C 1.53004 * 109.47122 * 185.00132 * 15 14 12 19 19 N 1.46505 * 109.46964 * 179.97438 * 18 15 14 20 20 C 1.46498 * 120.00091 * 270.00188 * 19 18 15 21 21 C 1.36938 * 119.99975 * 89.99652 * 19 18 15 22 22 H 1.07999 * 120.00241 * 329.59943 * 21 19 18 23 23 C 1.38811 * 119.99714 * 149.31687 * 21 19 18 24 24 N 1.31622 * 119.99697 * 168.49630 * 23 21 19 25 25 Si 1.86795 * 119.99994 * 348.49262 * 23 21 19 26 26 H 1.48497 * 109.47304 * 84.58152 * 25 23 21 27 27 H 1.48506 * 109.46917 * 204.57632 * 25 23 21 28 28 H 1.48496 * 109.47622 * 324.57578 * 25 23 21 29 29 H 1.09001 * 109.47869 * 300.00693 * 1 2 3 30 30 H 1.09004 * 109.47078 * 60.00604 * 1 2 3 31 31 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47772 * 59.99256 * 3 2 1 33 33 H 1.09006 * 109.46760 * 299.98883 * 3 2 1 34 34 H 1.08999 * 109.46921 * 89.98137 * 7 6 5 35 35 H 1.09005 * 109.46959 * 209.97710 * 7 6 5 36 36 H 1.08995 * 109.47253 * 329.97404 * 7 6 5 37 37 H 1.07995 * 126.29520 * 180.24510 * 8 6 5 38 38 H 1.09000 * 109.46627 * 272.26806 * 13 12 10 39 39 H 1.09001 * 109.47070 * 32.27037 * 13 12 10 40 40 H 1.09003 * 109.46965 * 152.27029 * 13 12 10 41 41 H 1.09001 * 109.47112 * 149.99752 * 14 12 10 42 42 H 1.09005 * 109.47231 * 30.00615 * 14 12 10 43 43 H 0.96694 * 114.00267 * 60.00479 * 17 15 14 44 44 H 1.08996 * 109.47063 * 60.00199 * 18 15 14 45 45 H 1.09000 * 109.46844 * 299.99493 * 18 15 14 46 46 H 1.08999 * 109.46949 * 275.19240 * 20 19 18 47 47 H 1.08996 * 109.47210 * 35.18654 * 20 19 18 48 48 H 1.09002 * 109.47209 * 155.19231 * 20 19 18 49 49 H 0.96994 * 119.99641 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2762 1.1262 1.0564 6 7 5.6097 1.0199 0.6458 7 6 6.7732 0.9272 1.5311 8 6 5.6425 1.0111 -0.6965 9 6 4.3406 1.1200 -1.1423 10 6 3.8968 1.1543 -2.5478 11 8 2.7356 1.3991 -2.8130 12 7 4.7782 0.9142 -3.5388 13 6 6.1407 0.4817 -3.2184 14 6 4.3736 1.0857 -4.9363 15 6 3.8063 -0.2318 -5.4685 16 1 4.5369 -1.0273 -5.3221 17 8 2.6052 -0.5523 -4.7639 18 6 3.4997 -0.0892 -6.9607 19 7 2.9571 -1.3510 -7.4704 20 6 3.8597 -2.3742 -8.0039 21 6 1.6062 -1.5740 -7.4481 22 1 0.9976 -1.1265 -6.6762 23 6 1.0181 -2.3706 -8.4209 24 7 -0.2275 -2.7716 -8.2787 25 14 1.9944 -2.8734 -9.9320 26 1 2.8012 -4.0807 -9.6209 27 1 1.0607 -3.1758 -11.0465 28 1 2.8973 -1.7637 -10.3299 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6887 1.8462 -0.8902 34 1 6.9799 -0.1201 1.7510 35 1 7.6389 1.3734 1.0414 36 1 6.5667 1.4596 2.4595 37 1 6.5254 0.9354 -1.3138 38 1 6.7733 1.3563 -3.0668 39 1 6.1269 -0.1189 -2.3089 40 1 6.5357 -0.1142 -4.0413 41 1 5.2391 1.3757 -5.5321 42 1 3.6113 1.8622 -5.0012 43 1 1.9092 0.1134 -4.8499 44 1 4.4159 0.1552 -7.4981 45 1 2.7692 0.7064 -7.1071 46 1 4.0729 -2.1602 -9.0512 47 1 4.7898 -2.3702 -7.4356 48 1 3.3879 -3.3534 -7.9218 49 1 -0.6382 -3.3285 -8.9583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571603133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = -22.554398 kcal Electronic energy + Delta-G solvation = -31007.055473 eV Core-core repulsion = 26779.574839 eV Total energy + Delta-G solvation = -4227.480634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.58735 -40.45405 -38.83278 -38.64503 -36.81828 -36.06385 -34.58327 -33.64953 -32.36053 -30.79336 -29.90918 -28.37364 -27.96796 -27.61961 -26.99536 -25.82858 -24.01402 -22.71252 -22.05897 -21.55428 -20.29600 -18.89107 -18.02917 -17.65799 -17.55346 -17.38443 -17.21373 -16.76447 -16.64433 -16.40709 -16.11191 -15.95645 -15.84869 -15.61930 -15.05141 -14.94463 -14.48811 -14.33520 -14.13583 -14.07233 -13.81474 -13.67640 -13.44346 -13.31614 -13.23236 -13.12696 -12.66828 -12.52170 -12.32138 -12.19852 -12.06067 -11.96943 -11.92117 -11.83702 -11.46057 -11.12235 -10.96020 -10.69685 -10.54058 -10.48503 -9.75633 -9.44787 -8.67980 -8.07446 -5.47520 0.53979 0.87091 1.33914 1.41146 1.42475 1.52406 2.11354 2.47230 2.49172 3.00258 3.18572 3.37834 3.38331 3.67381 3.77793 3.97537 3.98588 4.11281 4.19104 4.26598 4.31146 4.37395 4.40182 4.45787 4.48159 4.52094 4.54836 4.57779 4.58890 4.68125 4.72588 4.73625 4.80427 4.81607 4.82811 4.92253 4.93853 5.06473 5.23396 5.33267 5.65799 5.89046 5.98599 6.12974 6.25149 6.41594 6.58026 6.94462 7.08562 7.39998 7.70702 8.04412 9.13306 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002953 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.759011 B = 9479.772599 C =10794.459327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.411 6.411 3 C 0.140 3.860 4 C 0.105 3.895 5 N -0.311 5.311 6 N -0.355 5.355 7 C 0.084 3.916 8 C 0.105 3.895 9 C -0.303 4.303 10 C 0.586 3.414 11 O -0.572 6.572 12 N -0.608 5.608 13 C 0.052 3.948 14 C 0.097 3.903 15 C 0.077 3.923 16 H 0.083 0.917 17 O -0.563 6.563 18 C 0.120 3.880 19 N -0.620 5.620 20 C 0.091 3.909 21 C -0.231 4.231 22 H 0.048 0.952 23 C -0.052 4.052 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.320 1.320 28 H -0.256 1.256 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.366 0.634 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.023 0.977 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.936 12.056 18.310 31.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.329 6.329 3 C 0.062 3.938 4 C -0.062 4.062 5 N -0.135 5.135 6 N -0.133 5.133 7 C -0.055 4.055 8 C -0.047 4.047 9 C -0.318 4.318 10 C 0.376 3.624 11 O -0.452 6.452 12 N -0.340 5.340 13 C -0.089 4.089 14 C -0.027 4.027 15 C 0.014 3.986 16 H 0.101 0.899 17 O -0.368 6.368 18 C -0.006 4.006 19 N -0.344 5.344 20 C -0.053 4.053 21 C -0.361 4.361 22 H 0.065 0.935 23 C -0.244 4.244 24 N -0.620 5.620 25 Si 0.800 3.200 26 H -0.201 1.201 27 H -0.249 1.249 28 H -0.181 1.181 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.263 0.737 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.087 0.913 43 H 0.212 0.788 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.053 0.947 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.888 11.395 19.659 32.252 hybrid contribution -1.137 -0.039 -1.688 2.036 sum 21.751 11.356 17.971 30.414 Atomic orbital electron populations 1.22877 0.78984 1.03681 1.00892 1.87854 1.21773 1.27665 1.95622 1.20691 0.85559 0.85489 1.02048 1.22059 0.95894 0.98105 0.90135 1.77049 0.88407 1.25224 1.22784 1.48854 1.06086 1.52403 1.05986 1.22511 0.82932 1.05348 0.94695 1.24733 0.99611 0.95250 0.85075 1.20318 0.93926 1.23845 0.93702 1.17528 0.84665 0.75892 0.84350 1.90684 1.18936 1.51296 1.84293 1.47543 1.13349 1.67710 1.05393 1.22648 0.81309 1.01399 1.03593 1.22162 1.02057 0.97051 0.81388 1.23008 0.86718 0.96700 0.92165 0.89901 1.86561 1.25570 1.50526 1.74125 1.21649 0.98717 0.87022 0.93188 1.44085 1.02335 1.14970 1.73000 1.21574 0.94595 0.91950 0.97180 1.18845 0.83496 1.27403 1.06356 0.93457 1.26137 0.96436 1.00617 1.01237 1.69957 1.15373 1.40088 1.36595 0.85729 0.76647 0.78718 0.78898 1.20128 1.24923 1.18113 0.91759 0.94130 0.88959 0.90757 0.90683 0.88819 0.84934 0.88589 0.73678 0.88554 0.90068 0.89132 0.85821 0.91280 0.78792 0.89591 0.93319 0.95949 0.91142 0.94700 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -14.14 10.69 -148.98 -1.59 -15.73 16 3 C 0.14 4.30 6.06 71.24 0.43 4.73 16 4 C 0.10 3.14 6.89 43.52 0.30 3.44 16 5 N -0.31 -8.18 12.50 -46.67 -0.58 -8.76 16 6 N -0.35 -5.89 3.98 -367.77 -1.46 -7.36 16 7 C 0.08 0.40 11.44 127.77 1.46 1.86 16 8 C 0.10 1.64 9.37 84.27 0.79 2.43 16 9 C -0.30 -8.08 5.94 -20.15 -0.12 -8.20 16 10 C 0.59 18.08 7.36 86.66 0.64 18.72 16 11 O -0.57 -22.43 13.11 9.39 0.12 -22.31 16 12 N -0.61 -14.07 2.86 -850.66 -2.43 -16.50 16 13 C 0.05 0.58 8.70 127.77 1.11 1.69 16 14 C 0.10 2.35 5.09 86.38 0.44 2.79 16 15 C 0.08 2.54 3.48 30.59 0.11 2.64 16 16 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 17 O -0.56 -25.11 10.93 -135.54 -1.48 -26.59 16 18 C 0.12 4.34 5.41 86.38 0.47 4.81 16 19 N -0.62 -29.34 2.63 -726.93 -1.91 -31.25 16 20 C 0.09 3.81 8.35 127.77 1.07 4.88 16 21 C -0.23 -13.66 9.56 84.03 0.80 -12.86 16 22 H 0.05 3.14 7.53 -2.91 -0.02 3.12 16 23 C -0.05 -3.17 5.35 84.86 0.45 -2.71 16 24 N -0.97 -64.83 13.97 21.65 0.30 -64.53 16 25 Si 0.97 48.60 23.96 68.60 1.64 50.25 16 26 H -0.27 -12.96 6.54 99.48 0.65 -12.31 16 27 H -0.32 -16.42 7.11 99.48 0.71 -15.72 16 28 H -0.26 -11.86 6.31 99.48 0.63 -11.24 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.50 6.43 -2.38 -0.02 2.49 16 34 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.13 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.25 1.20 4.53 -2.91 -0.01 1.19 16 38 H 0.10 0.35 7.49 -2.39 -0.02 0.34 16 39 H 0.08 0.86 5.09 -2.39 -0.01 0.85 16 40 H 0.09 0.81 8.05 -2.39 -0.02 0.80 16 41 H 0.12 1.90 8.07 -2.39 -0.02 1.88 16 42 H 0.07 1.93 7.52 -2.38 -0.02 1.91 16 43 H 0.37 16.59 8.57 -74.06 -0.63 15.95 16 44 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 45 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 46 H 0.02 0.91 5.23 -2.39 -0.01 0.90 16 47 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 48 H 0.03 1.62 5.82 -2.39 -0.01 1.61 16 49 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -95.02 390.57 2.01 -93.02 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.20 Total: 23.45 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 9.20 Total: 26.32 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -6.09 Total: -128.40 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -2.95 Total: -64.63 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.64 Total: 50.25 kcal Total: -95.02 2.01 -93.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571603133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.462 kcal (2) G-P(sol) polarization free energy of solvation -95.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds