Wall clock time and date at job start Sat Apr 11 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 119.99666 * 2 1 4 4 N 1.34772 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00069 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47273 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99964 * 359.97438 * 6 5 4 8 8 N 1.34766 * 120.00022 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00106 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47223 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00275 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00062 * 180.02562 * 10 9 8 13 13 C 1.46930 * 120.62998 * 354.88611 * 12 10 9 14 14 C 1.53191 * 108.77521 * 126.41712 * 13 12 10 15 15 C 1.53039 * 109.33981 * 54.61839 * 14 13 12 16 16 C 1.53034 * 109.54046 * 298.68402 * 15 14 13 17 17 C 1.46923 * 120.63103 * 174.91219 * 12 10 9 18 18 H 1.09009 * 109.58530 * 113.79796 * 17 12 10 19 19 C 1.52993 * 109.58741 * 353.51529 * 17 12 10 20 20 N 1.46500 * 109.47490 * 73.07079 * 19 17 12 21 21 C 1.36941 * 120.00181 * 174.77440 * 20 19 17 22 22 H 1.08002 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99918 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99831 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99965 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47002 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47200 * 119.99662 * 25 23 21 28 28 H 1.48497 * 109.47012 * 239.99715 * 25 23 21 29 29 H 1.09001 * 109.47284 * 270.00289 * 1 2 3 30 30 H 1.08997 * 109.47207 * 30.00685 * 1 2 3 31 31 H 1.09007 * 109.47190 * 150.00020 * 1 2 3 32 32 H 0.97001 * 119.99890 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.46679 * 60.00385 * 5 4 2 34 34 H 1.08993 * 109.46991 * 300.00478 * 5 4 2 35 35 H 0.97001 * 120.00290 * 359.97438 * 8 6 5 36 36 H 1.08995 * 109.47422 * 59.99428 * 9 8 6 37 37 H 1.09004 * 109.46923 * 299.99537 * 9 8 6 38 38 H 1.09004 * 109.58529 * 6.62425 * 13 12 10 39 39 H 1.09006 * 109.70180 * 246.27661 * 13 12 10 40 40 H 1.09002 * 109.49419 * 174.58647 * 14 13 12 41 41 H 1.09001 * 109.49324 * 294.64807 * 14 13 12 42 42 H 1.08999 * 109.46018 * 58.67046 * 15 14 13 43 43 H 1.08999 * 109.45790 * 178.62971 * 15 14 13 44 44 H 1.09009 * 109.47354 * 301.37161 * 16 15 14 45 45 H 1.08996 * 109.52758 * 181.30271 * 16 15 14 46 46 H 1.08999 * 109.47108 * 193.07157 * 19 17 12 47 47 H 1.08996 * 109.46956 * 313.06933 * 19 17 12 48 48 H 0.96999 * 119.99895 * 354.77984 * 20 19 17 49 49 H 0.97003 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3602 -3.5098 0.0009 8 7 5.4733 -2.8341 0.0019 9 6 5.9617 -4.2153 0.0013 10 6 7.4687 -4.2153 0.0032 11 8 8.0751 -3.1649 0.0046 12 7 8.1426 -5.3825 0.0025 13 6 7.4263 -6.6606 0.1124 14 6 7.8463 -7.5630 -1.0521 15 6 9.3708 -7.6961 -1.0658 16 6 10.0032 -6.3175 -1.2698 17 6 9.6076 -5.4009 -0.1077 18 1 10.0390 -5.7792 0.8191 19 6 10.1200 -3.9836 -0.3711 20 7 10.0064 -3.1878 0.8536 21 6 10.5047 -1.9128 0.8904 22 1 10.9811 -1.4937 0.0164 23 6 10.3975 -1.1589 2.0510 24 7 9.8164 -1.6694 3.1160 25 14 11.0765 0.5806 2.1010 26 1 11.6757 0.9160 0.7843 27 1 9.9773 1.5326 2.4021 28 1 12.1168 0.6757 3.1564 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6959 -2.0072 0.0005 33 1 4.0089 -0.6531 0.8912 34 1 4.0096 -0.6534 -0.8888 35 1 6.1037 -2.0968 0.0024 36 1 5.5992 -4.7285 -0.8894 37 1 5.5977 -4.7299 0.8906 38 1 6.3519 -6.4823 0.0676 39 1 7.6775 -7.1426 1.0573 40 1 7.3961 -8.5481 -0.9296 41 1 7.5108 -7.1240 -1.9917 42 1 9.7075 -8.1126 -0.1165 43 1 9.6702 -8.3574 -1.8790 44 1 9.6479 -5.8899 -2.2074 45 1 11.0882 -6.4156 -1.3027 46 1 11.1642 -4.0265 -0.6809 47 1 9.5256 -3.5231 -1.1601 48 1 9.5783 -3.5640 1.6385 49 1 9.7418 -1.1428 3.9272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649463548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:51 Heat of formation + Delta-G solvation = -58.704111 kcal Electronic energy + Delta-G solvation = -30711.019200 eV Core-core repulsion = 26481.970997 eV Total energy + Delta-G solvation = -4229.048203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.53648 -40.01361 -39.07181 -37.16052 -35.05700 -34.53540 -34.00679 -32.76280 -32.01315 -30.75981 -29.84093 -28.65896 -26.56501 -25.64276 -24.38588 -22.76359 -21.61151 -20.76658 -20.60549 -20.55770 -19.03682 -17.93321 -17.03186 -16.79330 -16.44642 -16.22438 -15.88273 -15.61072 -15.52670 -15.07151 -14.75386 -14.53478 -14.40331 -13.99452 -13.89124 -13.57147 -13.44078 -13.23906 -12.98818 -12.94562 -12.80804 -12.71038 -12.36001 -12.29584 -12.18891 -11.97543 -11.72158 -11.10632 -10.98303 -10.77202 -10.73533 -10.64582 -10.34484 -10.16850 -10.13345 -9.87887 -9.54226 -9.38214 -9.16422 -8.72406 -8.62836 -8.17178 -6.55342 -5.58074 -2.78328 2.40711 2.48602 2.61462 3.09449 3.16511 3.50842 3.53481 3.58814 3.60623 4.53467 4.59596 4.67929 4.71335 4.75930 4.83993 4.94422 4.98496 5.10966 5.11894 5.21958 5.30347 5.31548 5.37090 5.40197 5.44137 5.56361 5.57216 5.73426 5.76303 5.79210 5.89591 5.94820 6.02426 6.07154 6.10597 6.26473 6.29737 6.48774 6.58614 6.84001 7.16028 7.30501 7.42164 7.73944 7.84872 8.01831 8.05687 8.59557 8.68871 9.71812 10.31760 10.66392 11.65689 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.003754 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.676388 B = 7457.678811 C =10771.898093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.547 6.547 4 N -0.718 5.718 5 C 0.098 3.902 6 C 0.514 3.486 7 O -0.551 6.551 8 N -0.703 5.703 9 C 0.104 3.896 10 C 0.466 3.534 11 O -0.437 6.437 12 N -0.610 5.610 13 C 0.108 3.892 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.142 3.858 18 H 0.071 0.929 19 C 0.162 3.838 20 N -0.695 5.695 21 C -0.208 4.208 22 H 0.064 0.936 23 C -0.020 4.020 24 N -0.937 5.937 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.412 0.588 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.420 0.580 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.034 0.966 48 H 0.380 0.620 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 -11.876 -9.121 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.424 6.424 4 N -0.374 5.374 5 C -0.030 4.030 6 C 0.300 3.700 7 O -0.430 6.430 8 N -0.358 5.358 9 C -0.023 4.023 10 C 0.250 3.750 11 O -0.305 6.305 12 N -0.348 5.348 13 C -0.016 4.016 14 C -0.172 4.172 15 C -0.156 4.156 16 C -0.166 4.166 17 C 0.039 3.961 18 H 0.089 0.911 19 C 0.034 3.966 20 N -0.338 5.338 21 C -0.340 4.340 22 H 0.082 0.918 23 C -0.215 4.215 24 N -0.588 5.588 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.222 1.222 28 H -0.223 1.223 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.249 0.751 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.259 0.741 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.035 0.965 47 H 0.052 0.948 48 H 0.213 0.787 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.581 -10.986 -9.184 19.735 hybrid contribution 0.258 0.570 0.461 0.778 sum -13.322 -10.416 -8.723 19.028 Atomic orbital electron populations 1.21855 0.91214 1.04931 1.04933 1.20836 0.90750 0.83091 0.75589 1.90758 1.70763 1.31383 1.49495 1.45812 1.06013 1.09901 1.75719 1.21051 0.82166 0.94205 1.05540 1.20395 0.82473 0.91072 0.76068 1.90664 1.55345 1.45936 1.51072 1.45656 1.07085 1.09403 1.73644 1.21102 0.93466 0.84208 1.03535 1.20354 0.88815 0.85129 0.80679 1.91262 1.66179 1.30239 1.42811 1.47802 1.06765 1.05042 1.75232 1.21665 0.96695 0.84697 0.98497 1.21914 0.96698 0.99582 0.99046 1.21501 0.95011 0.97141 1.01940 1.21909 1.00814 0.94957 0.98900 1.21519 0.78781 0.98042 0.97734 0.91143 1.20826 0.95909 0.87320 0.92501 1.42201 1.68933 1.13194 1.09500 1.19179 1.27843 0.90465 0.96534 0.91758 1.24587 1.02464 0.98033 0.96415 1.69665 1.50156 1.36577 1.02433 0.86204 0.78058 0.85597 0.76938 1.20867 1.22215 1.22346 0.88706 0.88769 0.90052 0.75068 0.87807 0.88041 0.74065 0.89272 0.89270 0.90147 0.91483 0.91076 0.91602 0.91796 0.91965 0.91617 0.90788 0.96518 0.94844 0.78661 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.30 36.01 0.37 -0.77 16 2 C 0.51 5.83 7.94 -10.99 -0.09 5.75 16 3 O -0.55 -8.75 17.10 5.56 0.10 -8.65 16 4 N -0.72 -7.75 5.53 -61.47 -0.34 -8.09 16 5 C 0.10 1.17 6.15 -5.19 -0.03 1.14 16 6 C 0.51 6.81 7.90 -10.99 -0.09 6.72 16 7 O -0.55 -8.11 15.67 5.55 0.09 -8.03 16 8 N -0.70 -9.86 5.53 -61.47 -0.34 -10.20 16 9 C 0.10 1.40 4.51 -5.19 -0.02 1.38 16 10 C 0.47 7.66 7.38 -10.99 -0.08 7.58 16 11 O -0.44 -9.23 9.39 5.55 0.05 -9.18 16 12 N -0.61 -8.67 2.97 -165.21 -0.49 -9.16 16 13 C 0.11 1.10 6.35 -3.71 -0.02 1.08 16 14 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 15 C -0.12 -1.10 5.89 -26.69 -0.16 -1.25 16 16 C -0.13 -1.50 5.35 -26.61 -0.14 -1.64 16 17 C 0.14 2.21 2.90 -67.60 -0.20 2.01 16 18 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 19 C 0.16 3.28 4.90 -4.05 -0.02 3.26 16 20 N -0.70 -17.64 3.20 -59.91 -0.19 -17.84 16 21 C -0.21 -5.94 9.73 -15.06 -0.15 -6.09 16 22 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 24 N -0.94 -28.95 13.06 55.49 0.72 -28.22 16 25 Si 0.90 23.28 29.55 -169.99 -5.02 18.25 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 3.90 7.44 -40.82 -0.30 3.60 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.42 6.44 7.44 -40.82 -0.30 6.14 16 36 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 37 H 0.09 1.16 7.74 -51.93 -0.40 0.76 16 38 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 47 H 0.03 0.73 6.36 -51.93 -0.33 0.40 16 48 H 0.38 10.35 7.22 -40.82 -0.29 10.06 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -36.58 394.28 -8.18 -44.76 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.81 Total: 13.26 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -0.88 Total: 17.16 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -0.64 Total: -73.52 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.23 Total: -25.85 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.58 -8.18 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649463548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.942 kcal (2) G-P(sol) polarization free energy of solvation -36.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds