Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21275 * 119.99666 * 2 1 4 4 N 1.34772 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00069 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47273 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99964 * 359.97438 * 6 5 4 8 8 N 1.34766 * 120.00022 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00106 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47223 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00275 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00062 * 180.02562 * 10 9 8 13 13 C 1.46930 * 120.62998 * 354.88611 * 12 10 9 14 14 C 1.53191 * 108.77521 * 126.41712 * 13 12 10 15 15 C 1.53039 * 109.33981 * 54.61839 * 14 13 12 16 16 C 1.53034 * 109.54046 * 298.68402 * 15 14 13 17 17 C 1.46923 * 120.63103 * 174.91219 * 12 10 9 18 18 H 1.09009 * 109.58530 * 113.79796 * 17 12 10 19 19 C 1.52993 * 109.58741 * 353.51529 * 17 12 10 20 20 N 1.46500 * 109.47490 * 73.07079 * 19 17 12 21 21 C 1.36941 * 120.00181 * 174.77440 * 20 19 17 22 22 H 1.08002 * 119.99918 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99918 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99831 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99965 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47002 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47200 * 119.99662 * 25 23 21 28 28 H 1.48497 * 109.47012 * 239.99715 * 25 23 21 29 29 H 1.09001 * 109.47284 * 270.00289 * 1 2 3 30 30 H 1.08997 * 109.47207 * 30.00685 * 1 2 3 31 31 H 1.09007 * 109.47190 * 150.00020 * 1 2 3 32 32 H 0.97001 * 119.99890 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.46679 * 60.00385 * 5 4 2 34 34 H 1.08993 * 109.46991 * 300.00478 * 5 4 2 35 35 H 0.97001 * 120.00290 * 359.97438 * 8 6 5 36 36 H 1.08995 * 109.47422 * 59.99428 * 9 8 6 37 37 H 1.09004 * 109.46923 * 299.99537 * 9 8 6 38 38 H 1.09004 * 109.58529 * 6.62425 * 13 12 10 39 39 H 1.09006 * 109.70180 * 246.27661 * 13 12 10 40 40 H 1.09002 * 109.49419 * 174.58647 * 14 13 12 41 41 H 1.09001 * 109.49324 * 294.64807 * 14 13 12 42 42 H 1.08999 * 109.46018 * 58.67046 * 15 14 13 43 43 H 1.08999 * 109.45790 * 178.62971 * 15 14 13 44 44 H 1.09009 * 109.47354 * 301.37161 * 16 15 14 45 45 H 1.08996 * 109.52758 * 181.30271 * 16 15 14 46 46 H 1.08999 * 109.47108 * 193.07157 * 19 17 12 47 47 H 1.08996 * 109.46956 * 313.06933 * 19 17 12 48 48 H 0.96999 * 119.99895 * 354.77984 * 20 19 17 49 49 H 0.97003 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3602 -3.5098 0.0009 8 7 5.4733 -2.8341 0.0019 9 6 5.9617 -4.2153 0.0013 10 6 7.4687 -4.2153 0.0032 11 8 8.0751 -3.1649 0.0046 12 7 8.1426 -5.3825 0.0025 13 6 7.4263 -6.6606 0.1124 14 6 7.8463 -7.5630 -1.0521 15 6 9.3708 -7.6961 -1.0658 16 6 10.0032 -6.3175 -1.2698 17 6 9.6076 -5.4009 -0.1077 18 1 10.0390 -5.7792 0.8191 19 6 10.1200 -3.9836 -0.3711 20 7 10.0064 -3.1878 0.8536 21 6 10.5047 -1.9128 0.8904 22 1 10.9811 -1.4937 0.0164 23 6 10.3975 -1.1589 2.0510 24 7 9.8164 -1.6694 3.1160 25 14 11.0765 0.5806 2.1010 26 1 11.6757 0.9160 0.7843 27 1 9.9773 1.5326 2.4021 28 1 12.1168 0.6757 3.1564 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6959 -2.0072 0.0005 33 1 4.0089 -0.6531 0.8912 34 1 4.0096 -0.6534 -0.8888 35 1 6.1037 -2.0968 0.0024 36 1 5.5992 -4.7285 -0.8894 37 1 5.5977 -4.7299 0.8906 38 1 6.3519 -6.4823 0.0676 39 1 7.6775 -7.1426 1.0573 40 1 7.3961 -8.5481 -0.9296 41 1 7.5108 -7.1240 -1.9917 42 1 9.7075 -8.1126 -0.1165 43 1 9.6702 -8.3574 -1.8790 44 1 9.6479 -5.8899 -2.2074 45 1 11.0882 -6.4156 -1.3027 46 1 11.1642 -4.0265 -0.6809 47 1 9.5256 -3.5231 -1.1601 48 1 9.5783 -3.5640 1.6385 49 1 9.7418 -1.1428 3.9272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649463548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = -87.649629 kcal Electronic energy + Delta-G solvation = -30712.274372 eV Core-core repulsion = 26481.970997 eV Total energy + Delta-G solvation = -4230.303375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.71907 -41.09167 -40.11770 -38.29714 -36.56627 -35.67702 -35.35331 -33.89040 -33.59818 -31.58840 -31.46762 -29.63066 -27.76775 -26.98903 -25.64991 -24.32860 -22.95557 -21.71146 -21.67861 -21.57603 -20.21557 -19.25912 -18.67723 -17.84035 -17.62371 -17.28321 -16.99433 -16.76905 -16.71347 -16.46188 -16.10341 -15.73349 -15.40471 -15.27012 -15.01016 -14.89099 -14.79684 -14.32512 -14.27929 -14.05591 -13.88729 -13.77542 -13.52583 -13.31508 -13.23526 -13.10415 -12.93721 -12.81835 -12.68782 -12.09446 -12.04819 -11.84995 -11.70232 -11.47283 -11.33147 -11.27963 -11.11834 -10.85220 -10.39802 -10.23508 -10.02880 -9.43780 -8.62197 -7.82372 -5.00183 1.33928 1.45074 1.46550 1.55336 1.57426 1.58470 1.82832 2.13401 2.49124 2.62569 3.45186 3.50792 3.54771 3.85013 3.90573 3.93019 4.02800 4.15322 4.18544 4.28786 4.31471 4.34878 4.36938 4.41724 4.52335 4.53834 4.65057 4.67286 4.77364 4.88862 5.00881 5.03925 5.06095 5.10297 5.16628 5.18549 5.22819 5.27448 5.33424 5.52672 5.56156 5.80653 6.26970 6.38543 6.46343 6.55636 6.91256 7.15675 7.41463 7.47397 8.26483 8.49270 9.42155 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.003754 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.676388 B = 7457.678811 C =10771.898093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.711 5.711 5 C 0.099 3.901 6 C 0.522 3.478 7 O -0.562 6.562 8 N -0.709 5.709 9 C 0.112 3.888 10 C 0.465 3.535 11 O -0.495 6.495 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.114 4.114 16 C -0.119 4.119 17 C 0.148 3.852 18 H 0.059 0.941 19 C 0.164 3.836 20 N -0.700 5.700 21 C -0.204 4.204 22 H 0.061 0.939 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.960 3.040 26 H -0.272 1.272 27 H -0.300 1.300 28 H -0.296 1.296 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.420 0.580 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.014 0.986 47 H 0.021 0.979 48 H 0.367 0.633 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 -14.129 -10.341 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.295 3.705 3 O -0.481 6.481 4 N -0.367 5.367 5 C -0.029 4.029 6 C 0.308 3.692 7 O -0.442 6.442 8 N -0.363 5.363 9 C -0.015 4.015 10 C 0.251 3.749 11 O -0.368 6.368 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.157 4.157 17 C 0.044 3.956 18 H 0.077 0.923 19 C 0.038 3.962 20 N -0.341 5.341 21 C -0.337 4.337 22 H 0.079 0.921 23 C -0.271 4.271 24 N -0.625 5.625 25 Si 0.791 3.209 26 H -0.197 1.197 27 H -0.228 1.228 28 H -0.224 1.224 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.259 0.741 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.251 0.749 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.199 0.801 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.065 -13.341 -10.455 22.677 hybrid contribution 0.692 1.156 0.766 1.550 sum -14.373 -12.186 -9.689 21.189 Atomic orbital electron populations 1.21894 0.87178 1.06484 1.06440 1.21743 0.92615 0.82152 0.74031 1.90735 1.72177 1.33127 1.52031 1.45830 1.05398 1.10373 1.75080 1.20980 0.83200 0.93364 1.05340 1.20445 0.81983 0.91285 0.75441 1.90652 1.55425 1.46356 1.51749 1.45748 1.07253 1.09501 1.73755 1.21127 0.91116 0.84239 1.04990 1.20904 0.90087 0.84879 0.79019 1.91233 1.67550 1.32141 1.45860 1.47941 1.06387 1.06176 1.73855 1.22010 0.97346 0.82963 0.99869 1.21900 0.96195 1.00478 0.97988 1.21503 0.95361 0.95380 1.02954 1.21852 1.01442 0.95706 0.96742 1.21354 0.79716 0.95611 0.98914 0.92300 1.20871 0.95563 0.89532 0.90242 1.42266 1.68541 1.12656 1.10638 1.19471 1.26406 0.91761 0.96067 0.92095 1.25244 1.03968 1.01513 0.96420 1.69812 1.52241 1.37662 1.02755 0.85239 0.77065 0.81448 0.77129 1.19680 1.22836 1.22405 0.87040 0.88379 0.87331 0.74052 0.88646 0.87731 0.74925 0.86884 0.88322 0.88364 0.90829 0.88202 0.91575 0.91519 0.89843 0.91808 0.90291 0.96858 0.96102 0.80074 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.30 71.24 0.73 -1.09 16 2 C 0.51 11.22 7.94 87.66 0.70 11.91 16 3 O -0.60 -19.52 17.10 -3.02 -0.05 -19.57 16 4 N -0.71 -14.78 5.53 -466.80 -2.58 -17.36 16 5 C 0.10 2.38 6.15 85.63 0.53 2.91 16 6 C 0.52 13.55 7.90 87.66 0.69 14.24 16 7 O -0.56 -15.67 15.67 -3.06 -0.05 -15.72 16 8 N -0.71 -19.89 5.53 -466.80 -2.58 -22.47 16 9 C 0.11 2.89 4.51 85.63 0.39 3.28 16 10 C 0.47 15.27 7.38 87.66 0.65 15.92 16 11 O -0.50 -21.64 9.39 -3.04 -0.03 -21.67 16 12 N -0.61 -16.66 2.97 -795.00 -2.36 -19.02 16 13 C 0.10 1.76 6.35 86.36 0.55 2.31 16 14 C -0.13 -1.69 6.08 30.67 0.19 -1.51 16 15 C -0.11 -1.73 5.89 30.62 0.18 -1.55 16 16 C -0.12 -2.58 5.35 30.67 0.16 -2.42 16 17 C 0.15 4.52 2.90 44.97 0.13 4.65 16 18 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 19 C 0.16 6.82 4.90 86.38 0.42 7.25 16 20 N -0.70 -36.71 3.20 -343.46 -1.10 -37.81 16 21 C -0.20 -11.96 9.73 84.03 0.82 -11.14 16 22 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 23 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 24 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 25 Si 0.96 49.13 29.55 68.60 2.03 51.16 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 28 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.42 7.30 7.44 -92.71 -0.69 6.61 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.41 13.18 7.44 -92.71 -0.69 12.50 16 36 H 0.11 2.38 7.90 -2.39 -0.02 2.37 16 37 H 0.10 2.39 7.74 -2.39 -0.02 2.37 16 38 H 0.10 1.41 5.93 -2.38 -0.01 1.39 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 47 H 0.02 0.95 6.36 -2.39 -0.02 0.93 16 48 H 0.37 20.79 7.22 -92.71 -0.67 20.12 16 49 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -82.31 394.28 -0.90 -83.21 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -1.06 Total: 40.37 kcal Atomic # 6 Polarization: 33.79 SS G_CDS: 6.60 Total: 40.39 kcal Atomic # 7 Polarization: -149.84 SS G_CDS: -8.34 Total: -158.18 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -0.13 Total: -56.96 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -82.31 -0.90 -83.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649463548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.440 kcal (2) G-P(sol) polarization free energy of solvation -82.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds