Wall clock time and date at job start Sat Apr 11 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99844 * 2 1 4 4 C 1.52996 * 109.46987 * 293.95428 * 3 2 1 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47035 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99873 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99754 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00137 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.21820 * 40.70173 * 9 7 6 11 11 C 1.54484 * 110.24485 * 278.77592 * 9 7 6 12 12 C 1.54626 * 101.76177 * 215.58133 * 11 9 7 13 13 C 1.51282 * 104.19698 * 24.79786 * 12 11 9 14 14 O 1.21284 * 124.93951 * 163.77255 * 13 12 11 15 15 N 1.34561 * 110.14237 * 343.67528 * 13 12 11 16 16 C 1.46491 * 124.43603 * 179.64390 * 15 13 12 17 17 C 1.46891 * 111.00111 * 123.95367 * 2 1 3 18 18 C 1.50700 * 109.47340 * 66.04845 * 17 2 1 19 19 O 1.21298 * 119.99805 * 359.97438 * 18 17 2 20 20 N 1.34775 * 120.00267 * 180.02562 * 18 17 2 21 21 C 1.37104 * 119.99848 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00017 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99609 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00015 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99619 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47516 * 59.99533 * 25 23 21 27 27 H 1.48501 * 109.47052 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46857 * 299.99383 * 25 23 21 29 29 H 1.09001 * 109.47087 * 60.00455 * 1 2 3 30 30 H 1.08999 * 109.46606 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47232 * 299.99936 * 1 2 3 32 32 H 1.08992 * 109.46864 * 173.95164 * 3 2 1 33 33 H 1.08996 * 109.46646 * 53.95067 * 3 2 1 34 34 H 1.09004 * 109.47298 * 59.99949 * 4 3 2 35 35 H 1.09004 * 109.47552 * 299.99821 * 4 3 2 36 36 H 1.09004 * 109.46930 * 59.99996 * 5 4 3 37 37 H 1.09000 * 109.47312 * 299.99939 * 5 4 3 38 38 H 0.96999 * 120.00080 * 0.02562 * 6 5 4 39 39 H 1.08996 * 110.97322 * 333.69873 * 11 9 7 40 40 H 1.08996 * 110.97036 * 97.42748 * 11 9 7 41 41 H 1.08998 * 110.48513 * 143.47532 * 12 11 9 42 42 H 1.09000 * 110.49274 * 266.12070 * 12 11 9 43 43 H 1.09002 * 109.47261 * 270.07516 * 16 15 13 44 44 H 1.08998 * 109.47687 * 30.07407 * 16 15 13 45 45 H 1.09002 * 109.47321 * 150.07388 * 16 15 13 46 46 H 1.09000 * 109.47352 * 186.04690 * 17 2 1 47 47 H 1.09001 * 109.47583 * 306.05119 * 17 2 1 48 48 H 0.96994 * 119.99975 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99669 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1791 3.4861 -1.3180 6 7 1.8311 4.1427 -2.5805 7 6 2.2118 5.4159 -2.8052 8 8 2.8429 6.0179 -1.9624 9 6 1.8533 6.0916 -4.1036 10 1 0.8350 5.8334 -4.3940 11 6 2.8463 5.6792 -5.2128 12 6 2.9631 6.9850 -6.0328 13 6 2.6078 8.0755 -5.0463 14 8 2.8431 9.2553 -5.2006 15 7 1.9908 7.5470 -3.9736 16 6 1.5186 8.3225 -2.8240 17 6 1.9955 -0.7659 1.1375 18 6 1.6370 -2.2204 0.9728 19 8 1.0047 -2.5831 0.0033 20 7 2.0181 -3.1179 1.9032 21 6 1.6924 -4.4412 1.7530 22 1 1.1302 -4.7643 0.8894 23 6 2.0849 -5.3665 2.7125 24 7 2.7686 -4.9732 3.7636 25 14 1.6418 -7.1695 2.5075 26 1 2.2355 -7.6851 1.2479 27 1 2.1733 -7.9437 3.6579 28 1 0.1648 -7.3132 2.4537 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0796 1.3444 0.1083 33 1 1.5610 1.9273 0.8309 34 1 0.5471 2.0844 -1.4265 35 1 2.0658 1.5016 -2.1492 36 1 3.2635 3.4594 -1.2095 37 1 1.7444 4.0417 -0.4871 38 1 1.3260 3.6614 -3.2544 39 1 3.8101 5.3975 -4.7887 40 1 2.4388 4.8714 -5.8206 41 1 3.9820 7.1170 -6.3968 42 1 2.2580 6.9780 -6.8639 43 1 2.3118 8.3879 -2.0792 44 1 1.2433 9.3254 -3.1505 45 1 0.6492 7.8314 -2.3868 46 1 3.0797 -0.6610 1.1756 47 1 1.5611 -0.3873 2.0628 48 1 2.5228 -2.8277 2.6790 49 1 3.0429 -5.6192 4.4332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660265161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:01 Heat of formation + Delta-G solvation = -124.182781 kcal Electronic energy + Delta-G solvation = -28641.304697 eV Core-core repulsion = 24409.417126 eV Total energy + Delta-G solvation = -4231.887572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93739 -40.40024 -40.16917 -38.27944 -37.35008 -36.25309 -35.76760 -33.81413 -33.26575 -32.62839 -29.75493 -29.12862 -27.65104 -27.38808 -26.42964 -24.20121 -23.25638 -22.11290 -21.49290 -20.94822 -20.45795 -19.82861 -18.63721 -17.95522 -17.76932 -17.19367 -16.92999 -16.84714 -16.53388 -16.47605 -16.19591 -15.84450 -15.69875 -15.18882 -15.02652 -14.89419 -14.81662 -14.62729 -14.51608 -13.73561 -13.67226 -13.54413 -13.45390 -13.33085 -13.11998 -13.00171 -12.86118 -12.73750 -12.68531 -12.48715 -12.38567 -12.28484 -12.11173 -12.05999 -11.60634 -11.42661 -11.17378 -10.93758 -10.25399 -10.12754 -9.97697 -9.78113 -9.17275 -8.44265 -5.92879 1.40492 1.41366 1.43243 1.47750 1.53944 1.82648 2.08554 2.21319 2.31267 2.83334 3.22818 3.27398 3.40471 3.45998 3.70812 3.99728 4.00852 4.05206 4.11026 4.17924 4.27944 4.34362 4.38912 4.43217 4.51892 4.57564 4.59559 4.63849 4.68037 4.79202 4.81280 4.83323 4.84024 4.98063 5.04698 5.13009 5.23936 5.31612 5.33656 5.42791 5.44221 5.90967 5.98149 6.09849 6.26353 6.51715 6.63299 7.02131 7.15433 7.19789 7.59548 8.15263 8.72847 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.001417 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.615523 B =19754.628560 C =19988.413586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.113 4.113 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.504 3.496 8 O -0.575 6.575 9 C 0.112 3.888 10 H 0.145 0.855 11 C -0.111 4.111 12 C -0.143 4.143 13 C 0.502 3.498 14 O -0.584 6.584 15 N -0.608 5.608 16 C 0.101 3.899 17 C 0.056 3.944 18 C 0.441 3.559 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.420 0.580 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.065 0.935 48 H 0.395 0.605 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 21.197 -15.680 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.072 4.072 4 C -0.151 4.151 5 C 0.004 3.996 6 N -0.360 5.360 7 C 0.289 3.711 8 O -0.454 6.454 9 C 0.005 3.995 10 H 0.163 0.837 11 C -0.149 4.149 12 C -0.183 4.183 13 C 0.293 3.707 14 O -0.464 6.464 15 N -0.341 5.341 16 C -0.041 4.041 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.258 0.742 39 H 0.096 0.904 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.126 0.874 47 H 0.082 0.918 48 H 0.229 0.771 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.601 21.690 -15.969 27.060 hybrid contribution -0.238 -0.510 1.519 1.619 sum -2.840 21.181 -14.450 25.797 Atomic orbital electron populations 1.22472 0.86879 1.02189 1.00801 1.61521 1.08874 1.13543 1.42070 1.22106 1.00783 0.86778 0.97542 1.21620 1.02284 0.93080 0.98108 1.21176 1.00159 0.92367 0.85904 1.45822 1.57033 1.12981 1.20200 1.21097 0.78930 0.82175 0.88874 1.90748 1.41194 1.65421 1.47997 1.21998 1.04449 0.79619 0.93415 0.83734 1.22721 0.99100 0.98609 0.94473 1.22412 1.06330 0.91576 0.97942 1.21825 0.75688 0.89559 0.83676 1.90703 1.56725 1.19626 1.79391 1.48112 1.58417 1.07702 1.19869 1.21494 0.99568 0.95825 0.87197 1.21740 1.02065 0.90233 0.93451 1.20791 0.83680 0.88784 0.83866 1.90456 1.45068 1.81455 1.32929 1.41951 1.50162 1.07072 1.22169 1.19635 1.34476 0.84085 1.08052 0.90188 1.26024 0.96287 1.04290 0.94684 1.69669 1.38183 1.37213 1.11187 0.84994 0.78609 0.76823 0.77950 1.19708 1.19682 1.19691 0.89430 0.92914 0.95593 0.90010 0.93910 0.90133 0.90039 0.92088 0.92093 0.74179 0.90397 0.83618 0.87078 0.84456 0.93672 0.91308 0.89667 0.87370 0.91757 0.77116 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 8.96 127.69 1.14 1.84 16 2 N -0.54 -15.42 4.50 -927.08 -4.17 -19.59 16 3 C 0.06 1.08 4.96 86.30 0.43 1.51 16 4 C -0.11 -1.52 5.25 30.59 0.16 -1.36 16 5 C 0.13 1.65 5.67 86.38 0.49 2.14 16 6 N -0.71 -6.26 5.56 -463.04 -2.57 -8.83 16 7 C 0.50 6.79 6.71 87.66 0.59 7.37 16 8 O -0.57 -13.67 15.01 -3.04 -0.05 -13.71 16 9 C 0.11 0.86 3.70 44.70 0.17 1.02 16 10 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 11 C -0.11 -0.36 6.68 31.65 0.21 -0.15 16 12 C -0.14 -0.99 6.86 30.59 0.21 -0.78 16 13 C 0.50 9.22 8.03 87.88 0.71 9.92 16 14 O -0.58 -16.53 17.60 -3.04 -0.05 -16.58 16 15 N -0.61 -9.47 3.01 -822.88 -2.48 -11.94 16 16 C 0.10 1.70 9.59 127.77 1.23 2.93 16 17 C 0.06 1.85 5.45 85.56 0.47 2.32 16 18 C 0.44 20.37 7.48 87.66 0.66 21.02 16 19 O -0.61 -32.60 13.91 -3.08 -0.04 -32.64 16 20 N -0.58 -29.03 5.29 -306.97 -1.62 -30.66 16 21 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 29 H 0.09 1.95 6.47 -2.39 -0.02 1.93 16 30 H 0.05 1.98 5.82 -2.39 -0.01 1.96 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.50 7.93 -2.39 -0.02 1.49 16 33 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.08 0.97 6.55 -2.38 -0.02 0.96 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.42 0.90 8.47 -92.71 -0.79 0.11 16 39 H 0.08 0.49 7.90 -2.39 -0.02 0.47 16 40 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.04 0.96 7.49 -2.39 -0.02 0.94 16 44 H 0.07 1.19 7.93 -2.39 -0.02 1.17 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.11 3.13 7.93 -2.39 -0.02 3.11 16 47 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 48 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 49 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -83.27 402.69 -1.49 -84.76 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.54 Total: 24.11 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 7.73 Total: 29.76 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -10.56 Total: -120.00 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -0.14 Total: -62.94 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -83.27 -1.49 -84.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660265161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.426 kcal (2) G-P(sol) polarization free energy of solvation -83.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds