Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 119.99924 * 2 1 4 4 N 1.34777 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99961 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47172 * 59.99767 * 5 4 2 7 7 C 1.53010 * 109.46963 * 300.00075 * 5 4 2 8 8 C 1.50697 * 109.47042 * 180.02562 * 5 4 2 9 9 O 1.21283 * 120.00015 * 145.00350 * 8 5 4 10 10 N 1.34776 * 120.00222 * 324.99218 * 8 5 4 11 11 C 1.46498 * 120.00351 * 180.02562 * 10 8 5 12 12 H 1.09000 * 112.90609 * 23.75312 * 11 10 8 13 13 C 1.53783 * 113.61244 * 155.00144 * 11 10 8 14 14 C 1.53784 * 87.07882 * 139.98457 * 13 11 10 15 15 H 1.08998 * 113.61570 * 89.20082 * 14 13 11 16 16 N 1.46903 * 113.61472 * 220.01981 * 14 13 11 17 17 C 1.46896 * 110.99955 * 205.00043 * 16 14 13 18 18 C 1.50701 * 109.46946 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00278 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00078 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99959 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00408 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99816 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99915 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00007 * 25 23 21 29 29 C 1.53781 * 113.61419 * 252.49974 * 11 10 8 30 30 H 1.08994 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47129 * 300.00409 * 1 2 3 32 32 H 1.09002 * 109.46805 * 60.00122 * 1 2 3 33 33 H 0.97001 * 120.00342 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.47122 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47512 * 300.00039 * 6 5 4 36 36 H 1.08994 * 109.47264 * 60.00401 * 6 5 4 37 37 H 1.09003 * 109.46731 * 299.99815 * 7 5 4 38 38 H 1.08990 * 109.47042 * 59.99883 * 7 5 4 39 39 H 1.09001 * 109.46927 * 180.02562 * 7 5 4 40 40 H 0.97005 * 119.99397 * 0.02562 * 10 8 5 41 41 H 1.09001 * 113.61594 * 25.43564 * 13 11 10 42 42 H 1.08996 * 113.69258 * 254.54077 * 13 11 10 43 43 H 1.00901 * 110.99869 * 328.95114 * 16 14 13 44 44 H 1.08994 * 109.47346 * 60.00149 * 17 16 14 45 45 H 1.09006 * 109.47133 * 299.99542 * 17 16 14 46 46 H 0.97000 * 119.99555 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00340 * 359.97438 * 24 23 21 48 48 H 1.09008 * 113.61181 * 105.47362 * 29 11 10 49 49 H 1.08997 * 113.61615 * 334.56689 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1554 -0.4457 1.2503 7 6 4.1563 -0.4462 -1.2482 8 6 4.1481 -2.5880 0.0010 9 8 5.1617 -2.8729 -0.6011 10 7 3.4712 -3.5422 0.6701 11 6 3.9597 -4.9233 0.6704 12 1 5.0297 -4.9949 0.4752 13 6 3.5002 -5.7389 1.8905 14 6 3.2994 -6.9201 0.9265 15 1 4.1884 -7.5385 0.8024 16 7 2.0910 -7.7078 1.2046 17 6 2.2325 -9.0825 0.7064 18 6 0.9762 -9.8580 1.0085 19 8 0.0539 -9.3188 1.5828 20 7 0.8778 -11.1511 0.6415 21 6 -0.2649 -11.8568 0.9169 22 1 -1.0861 -11.3767 1.4282 23 6 -0.3666 -13.1898 0.5380 24 7 0.6325 -13.7739 -0.0847 25 14 -1.9233 -14.1516 0.9138 26 1 -1.7806 -15.5409 0.4094 27 1 -2.1466 -14.1777 2.3817 28 1 -3.0802 -13.5003 0.2485 29 6 3.1118 -5.8769 -0.1878 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 5.2454 -0.4461 1.2509 35 1 3.7921 0.5819 1.2499 36 1 3.7918 -0.9593 2.1402 37 1 3.7933 -0.9603 -2.1382 38 1 3.7930 0.5813 -1.2485 39 1 5.2463 -0.4466 -1.2480 40 1 2.6604 -3.3144 1.1514 41 1 2.5736 -5.3756 2.3348 42 1 4.2860 -5.9054 2.6272 43 1 1.8737 -7.7009 2.1899 44 1 3.0813 -9.5605 1.1951 45 1 2.3969 -9.0634 -0.3711 46 1 1.6155 -11.5824 0.1825 47 1 1.4406 -13.2744 -0.2802 48 1 3.5852 -6.1542 -1.1297 49 1 2.0790 -5.5513 -0.3116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661665678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = -85.744248 kcal Electronic energy + Delta-G solvation = -29272.728549 eV Core-core repulsion = 25042.507797 eV Total energy + Delta-G solvation = -4230.220752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24684 -39.94108 -38.92653 -38.17641 -35.92811 -34.90514 -34.18959 -32.61071 -32.59343 -31.07979 -29.41985 -27.68735 -26.99315 -25.95872 -25.06834 -23.90405 -22.33791 -21.28367 -20.25028 -19.88763 -19.60310 -18.53511 -17.94631 -17.23113 -16.77355 -16.32910 -15.79581 -15.67396 -15.47076 -15.35325 -15.02209 -14.77103 -14.46462 -14.21154 -13.88084 -13.73791 -13.61787 -13.45991 -13.14843 -12.92829 -12.79144 -12.67876 -12.62783 -12.39808 -12.25067 -12.15734 -11.93147 -11.69683 -11.39620 -11.27135 -11.13458 -10.96919 -10.78027 -10.49074 -10.23171 -9.90058 -9.87183 -9.71102 -9.58349 -9.41285 -8.56603 -8.22415 -8.06932 -6.78689 -3.92147 1.99839 2.17796 2.62280 2.71790 3.28212 3.32480 3.52829 3.80210 4.01100 4.11626 4.24048 4.30358 4.33326 4.35834 4.52343 4.56538 4.67983 4.73207 4.74549 4.97417 5.00772 5.16886 5.20771 5.27951 5.28904 5.34248 5.42540 5.43717 5.49050 5.52252 5.61794 5.67967 5.76048 5.79705 5.83451 5.88887 5.90802 5.94330 6.00594 6.23644 6.91080 7.02059 7.10348 7.49855 7.67188 7.76210 7.76928 8.04406 8.56285 8.75833 9.43814 9.83406 10.64625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.001759 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.439073 B =15911.383072 C =16792.160939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.518 3.482 3 O -0.538 6.538 4 N -0.728 5.728 5 C 0.159 3.841 6 C -0.159 4.159 7 C -0.150 4.150 8 C 0.518 3.482 9 O -0.524 6.524 10 N -0.714 5.714 11 C 0.120 3.880 12 H 0.116 0.884 13 C -0.148 4.148 14 C 0.062 3.938 15 H 0.076 0.924 16 N -0.653 5.653 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.578 6.578 20 N -0.575 5.575 21 C -0.383 4.383 22 H 0.099 0.901 23 C -0.010 4.010 24 N -0.900 5.900 25 Si 1.092 2.908 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 C -0.136 4.136 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.400 0.600 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.376 0.624 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 24.525 1.369 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.306 3.694 3 O -0.415 6.415 4 N -0.384 5.384 5 C 0.071 3.929 6 C -0.218 4.218 7 C -0.209 4.209 8 C 0.302 3.698 9 O -0.399 6.399 10 N -0.366 5.366 11 C 0.015 3.985 12 H 0.134 0.866 13 C -0.187 4.187 14 C -0.049 4.049 15 H 0.094 0.906 16 N -0.286 5.286 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.462 6.462 20 N -0.213 5.213 21 C -0.512 4.512 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.539 5.539 25 Si 0.918 3.082 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.176 4.176 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.209 0.791 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.994 24.123 0.615 24.865 hybrid contribution 1.184 0.388 0.722 1.440 sum 7.178 24.511 1.337 25.575 Atomic orbital electron populations 1.21887 0.91176 1.04640 1.05585 1.20831 0.90636 0.83149 0.74791 1.90678 1.70405 1.31360 1.49007 1.46354 1.06065 1.09438 1.76583 1.20611 0.80421 0.92679 0.99238 1.22177 1.02070 1.02825 0.94685 1.22054 1.02388 1.01714 0.94695 1.20528 0.84334 0.86402 0.78499 1.90741 1.24618 1.81797 1.42706 1.46075 1.28789 1.08710 1.52983 1.22456 0.99878 0.78712 0.97452 0.86594 1.23628 1.02336 0.96041 0.96682 1.22803 0.92509 0.92889 0.96738 0.90617 1.60204 1.33182 1.11649 1.23547 1.21742 0.96472 0.88982 1.01163 1.19733 0.89385 0.82713 0.85362 1.90521 1.40663 1.69085 1.45940 1.41946 1.17112 1.09657 1.52583 1.20526 0.95378 0.95913 1.39389 0.88327 1.26530 1.04845 0.94471 0.95384 1.70903 1.05439 1.38973 1.38590 0.83127 0.72817 0.75764 0.76537 1.20401 1.21015 1.20979 1.23579 1.01084 0.95104 0.97839 0.90310 0.88449 0.88483 0.76260 0.90938 0.88985 0.92087 0.92239 0.89617 0.90561 0.76468 0.88658 0.90647 0.82849 0.93822 0.89622 0.79131 0.92756 0.91193 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.39 36.00 0.37 -0.32 16 2 C 0.52 3.73 7.36 -10.99 -0.08 3.65 16 3 O -0.54 -5.77 13.31 5.56 0.07 -5.70 16 4 N -0.73 -4.47 4.86 -48.68 -0.24 -4.71 16 5 C 0.16 1.29 0.98 -132.97 -0.13 1.16 16 6 C -0.16 -1.22 8.38 37.15 0.31 -0.91 16 7 C -0.15 -1.38 7.93 37.16 0.29 -1.09 16 8 C 0.52 4.90 6.65 -10.99 -0.07 4.83 16 9 O -0.52 -6.89 15.70 5.55 0.09 -6.81 16 10 N -0.71 -5.29 5.05 -53.02 -0.27 -5.56 16 11 C 0.12 1.03 4.24 -67.12 -0.28 0.75 16 12 H 0.12 1.13 7.47 -51.93 -0.39 0.74 16 13 C -0.15 -1.21 7.40 -25.92 -0.19 -1.41 16 14 C 0.06 0.66 4.14 -66.89 -0.28 0.38 16 15 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 16 N -0.65 -9.49 6.18 -107.13 -0.66 -10.15 16 17 C 0.05 0.82 6.01 -4.98 -0.03 0.79 16 18 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 19 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 20 N -0.57 -14.23 5.28 -10.97 -0.06 -14.29 16 21 C -0.38 -10.63 9.68 -14.93 -0.14 -10.78 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 23 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 24 N -0.90 -24.98 13.68 55.50 0.76 -24.22 16 25 Si 1.09 23.95 29.92 -169.99 -5.09 18.87 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 29 C -0.14 -1.37 7.68 -25.92 -0.20 -1.57 16 30 H 0.08 0.18 7.91 -51.93 -0.41 -0.23 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 1.68 7.08 -40.82 -0.29 1.39 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.85 6.17 -51.93 -0.32 0.53 16 39 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 40 H 0.40 2.08 7.47 -40.82 -0.30 1.77 16 41 H 0.09 0.75 8.12 -51.93 -0.42 0.32 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.35 5.25 8.25 -39.29 -0.32 4.93 16 44 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.38 8.58 6.73 -40.82 -0.27 8.31 16 47 H 0.26 6.96 6.78 -40.82 -0.28 6.68 16 48 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -35.61 401.68 -7.41 -43.02 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.55 Total: 13.57 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.61 Total: 5.20 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.47 Total: -58.93 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: 0.25 Total: -27.78 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.61 -7.41 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661665678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.728 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds