Wall clock time and date at job start Sat Apr 11 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99689 * 2 1 4 4 N 1.34776 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00023 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47193 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99610 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00216 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00162 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.53437 * 54.90269 * 10 9 8 12 12 C 1.53121 * 109.50219 * 294.80449 * 10 9 8 13 13 C 1.53118 * 109.15768 * 182.40148 * 12 10 9 14 14 C 1.53035 * 109.28099 * 57.65537 * 13 12 10 15 15 N 1.46845 * 109.52102 * 300.82301 * 14 13 12 16 16 C 1.46907 * 110.99965 * 185.83632 * 15 14 13 17 17 C 1.50699 * 109.47173 * 169.39519 * 16 15 14 18 18 O 1.21293 * 120.00043 * 353.73347 * 17 16 15 19 19 N 1.34772 * 120.00234 * 173.73454 * 17 16 15 20 20 C 1.37101 * 120.00383 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99854 * 359.97438 * 20 19 17 22 22 C 1.38942 * 119.99988 * 179.97438 * 20 19 17 23 23 N 1.31424 * 119.99899 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00492 * 359.71918 * 22 20 19 25 25 H 1.48497 * 109.47430 * 270.28191 * 24 22 20 26 26 H 1.48504 * 109.46631 * 30.27662 * 24 22 20 27 27 H 1.48497 * 109.47314 * 150.27372 * 24 22 20 28 28 C 1.46839 * 111.20439 * 61.73765 * 15 14 13 29 29 H 1.08999 * 109.46825 * 269.99957 * 1 2 3 30 30 H 1.09001 * 109.47401 * 30.00165 * 1 2 3 31 31 H 1.09006 * 109.46839 * 149.99790 * 1 2 3 32 32 H 0.96999 * 119.99946 * 359.97438 * 4 2 1 33 33 H 1.09005 * 109.47172 * 59.99794 * 5 4 2 34 34 H 1.08998 * 109.46939 * 300.00013 * 5 4 2 35 35 H 0.97006 * 119.99759 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.47011 * 59.99765 * 9 8 6 37 37 H 1.08997 * 109.46776 * 300.00048 * 9 8 6 38 38 H 1.08997 * 109.52622 * 302.30485 * 12 10 9 39 39 H 1.09005 * 109.52236 * 62.50158 * 12 10 9 40 40 H 1.08998 * 109.50291 * 177.59586 * 13 12 10 41 41 H 1.09000 * 109.50498 * 297.71188 * 13 12 10 42 42 H 1.09000 * 109.46854 * 180.79987 * 14 13 12 43 43 H 1.09000 * 109.46202 * 60.83223 * 14 13 12 44 44 H 1.09001 * 109.46873 * 49.40043 * 16 15 14 45 45 H 1.08993 * 109.47099 * 289.39447 * 16 15 14 46 46 H 0.97004 * 120.00023 * 359.97438 * 19 17 16 47 47 H 0.96996 * 119.99582 * 179.72104 * 23 22 20 48 48 H 1.09000 * 109.46115 * 58.27429 * 28 15 14 49 49 H 1.09000 * 109.46852 * 178.25426 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1483 -2.5879 -0.0001 7 8 3.3602 -3.5098 -0.0001 8 7 5.4734 -2.8342 0.0009 9 6 5.9618 -4.2153 0.0014 10 6 7.4918 -4.2153 0.0018 11 1 7.8560 -3.6245 0.8423 12 6 8.0033 -3.6101 -1.3084 13 6 9.5333 -3.6688 -1.3253 14 6 9.9851 -5.1216 -1.1607 15 7 9.4710 -5.6547 0.1073 16 6 9.9989 -7.0012 0.3650 17 6 9.6669 -7.4091 1.7772 18 8 9.1526 -6.6125 2.5336 19 7 9.9414 -8.6591 2.1998 20 6 9.6388 -9.0305 3.4844 21 1 9.1809 -8.3212 4.1579 22 6 9.9214 -10.3193 3.9198 23 7 9.6318 -10.6751 5.1514 24 14 10.7062 -11.5486 2.7526 25 1 9.6439 -12.2879 2.0246 26 1 11.5642 -10.8276 1.7782 27 1 11.5347 -12.5072 3.5271 28 6 8.0027 -5.6523 0.1280 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6960 -2.0072 -0.0005 33 1 4.0089 -0.6538 0.8905 34 1 4.0095 -0.6527 -0.8894 35 1 6.1037 -2.0968 0.0013 36 1 5.5991 -4.7293 -0.8889 37 1 5.5978 -4.7291 0.8911 38 1 7.6077 -4.1775 -2.1507 39 1 7.6778 -2.5724 -1.3818 40 1 9.9019 -3.2783 -2.2739 41 1 9.9296 -3.0693 -0.5058 42 1 11.0742 -5.1653 -1.1581 43 1 9.5999 -5.7177 -1.9880 44 1 11.0808 -6.9987 0.2325 45 1 9.5489 -7.7075 -0.3325 46 1 10.3523 -9.2963 1.5948 47 1 9.8253 -11.5761 5.4540 48 1 7.6268 -6.2459 -0.7053 49 1 7.6520 -6.0812 1.0668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661697526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:20 Heat of formation + Delta-G solvation = -108.513232 kcal Electronic energy + Delta-G solvation = -29221.192924 eV Core-core repulsion = 24989.984835 eV Total energy + Delta-G solvation = -4231.208089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54898 -39.69200 -39.17255 -37.90433 -35.62393 -34.74565 -34.01838 -33.06856 -31.65970 -31.59944 -30.73233 -27.99540 -27.60718 -25.48936 -24.62065 -22.93765 -21.72244 -21.00868 -20.93702 -19.75520 -19.36024 -18.30666 -18.04839 -16.98447 -16.43827 -16.39714 -16.05182 -15.78234 -15.53422 -15.26224 -14.94923 -14.90814 -14.42376 -14.32933 -14.01691 -13.84731 -13.49254 -13.43563 -13.29222 -13.09301 -12.96200 -12.86289 -12.55540 -12.44992 -12.31636 -12.07610 -11.85559 -11.57303 -11.16413 -11.15115 -10.81039 -10.60955 -10.59807 -10.38416 -10.36920 -10.24979 -9.98403 -9.61226 -9.54127 -9.34930 -8.58232 -8.18939 -7.99856 -6.31974 -3.83390 2.18387 2.27294 2.45878 3.01250 3.05555 3.11528 3.14049 3.72784 3.85686 4.09203 4.25010 4.46757 4.53539 4.64272 4.73282 4.82229 4.86221 4.86880 4.96243 5.01584 5.06084 5.17738 5.23748 5.36384 5.42083 5.42502 5.45935 5.53852 5.61839 5.64669 5.69940 5.79863 5.86368 5.88358 5.93189 5.96708 6.04512 6.08245 6.30593 6.34534 7.07423 7.10718 7.13748 7.28572 7.57774 7.77887 7.81285 8.13576 8.59394 8.94472 9.41642 9.82533 10.81130 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.001966 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.996508 B =14235.801458 C =15641.061159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.719 5.719 5 C 0.098 3.902 6 C 0.507 3.493 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.125 3.875 10 C -0.094 4.094 11 H 0.091 0.909 12 C -0.116 4.116 13 C -0.115 4.115 14 C 0.054 3.946 15 N -0.514 5.514 16 C 0.044 3.956 17 C 0.451 3.549 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.277 1.277 28 C 0.063 3.937 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.027 0.973 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 16.286 -17.336 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.428 6.428 4 N -0.376 5.376 5 C -0.030 4.030 6 C 0.292 3.708 7 O -0.415 6.415 8 N -0.370 5.370 9 C 0.001 3.999 10 C -0.113 4.113 11 H 0.109 0.891 12 C -0.153 4.153 13 C -0.152 4.152 14 C -0.075 4.075 15 N -0.238 5.238 16 C -0.087 4.087 17 C 0.237 3.763 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.202 1.202 28 C -0.065 4.065 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.250 17.024 -16.268 25.299 hybrid contribution 0.645 -1.868 -1.420 2.433 sum -8.604 15.157 -17.688 24.832 Atomic orbital electron populations 1.21868 0.91050 1.05075 1.05089 1.20858 0.90836 0.82977 0.75295 1.90735 1.70832 1.31416 1.49801 1.45840 1.05960 1.10078 1.75680 1.21064 0.82594 0.94349 1.04969 1.20478 0.82908 0.90988 0.76378 1.90722 1.55151 1.45943 1.49711 1.45897 1.06551 1.09829 1.74770 1.21436 0.93809 0.81752 1.02915 1.21387 0.92570 0.98323 0.98988 0.89106 1.21674 0.96069 1.00408 0.97190 1.21552 0.95403 0.96467 1.01815 1.22126 0.99970 0.95408 0.89948 1.61416 1.08097 1.22154 1.32121 1.21883 1.00922 0.89577 0.96355 1.19654 0.84912 0.82884 0.88865 1.90545 1.46225 1.50982 1.56188 1.42233 1.56460 1.11113 1.13322 1.19418 1.38311 0.98377 0.87149 0.86271 1.25039 0.97812 0.97170 0.96163 1.69626 1.47048 1.19859 1.15603 0.86678 0.79852 0.81947 0.80938 1.19677 1.19513 1.20189 1.22080 0.87179 0.94712 1.02514 0.88575 0.88689 0.89931 0.74849 0.88201 0.88321 0.76140 0.91310 0.90546 0.92158 0.92098 0.91653 0.90823 0.90786 0.95272 0.89066 0.93516 0.79765 0.91627 0.95534 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.30 36.01 0.37 -0.46 16 2 C 0.51 4.50 7.94 -10.98 -0.09 4.42 16 3 O -0.55 -7.01 17.10 5.56 0.10 -6.92 16 4 N -0.72 -5.83 5.53 -61.47 -0.34 -6.17 16 5 C 0.10 0.76 6.15 -5.19 -0.03 0.73 16 6 C 0.51 4.93 7.90 -10.98 -0.09 4.84 16 7 O -0.54 -7.12 15.67 5.55 0.09 -7.03 16 8 N -0.72 -6.10 5.31 -60.29 -0.32 -6.42 16 9 C 0.12 1.33 5.07 -4.04 -0.02 1.31 16 10 C -0.09 -1.03 2.39 -90.54 -0.22 -1.24 16 11 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.12 -1.00 5.13 -26.61 -0.14 -1.14 16 13 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16 14 C 0.05 0.59 5.46 -3.84 -0.02 0.57 16 15 N -0.51 -7.62 4.35 -236.12 -1.03 -8.65 16 16 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 17 C 0.45 9.93 7.31 -10.99 -0.08 9.85 16 18 O -0.56 -14.39 14.29 5.55 0.08 -14.31 16 19 N -0.59 -13.81 5.09 -10.97 -0.06 -13.87 16 20 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 24 Si 0.88 19.19 27.73 -169.99 -4.71 14.48 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.06 0.91 4.40 -3.84 -0.02 0.89 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.41 3.12 7.44 -40.82 -0.30 2.82 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 2.41 7.68 -40.82 -0.31 2.09 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.42 7.27 -51.93 -0.38 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 45 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 47 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 1.83 6.06 -51.93 -0.31 1.51 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -36.23 398.85 -8.02 -44.25 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.85 Total: 11.83 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -0.76 Total: 11.63 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.97 Total: -59.94 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.26 Total: -28.27 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.23 -8.02 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661697526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.262 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds