Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21284 * 119.99818 * 2 1 4 4 N 1.34775 * 119.99987 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99755 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47355 * 34.99866 * 5 4 2 7 7 C 1.53002 * 109.47131 * 155.00251 * 5 4 2 8 8 C 1.50702 * 109.46891 * 294.99809 * 7 5 4 9 9 O 1.21282 * 120.00039 * 0.02562 * 8 7 5 10 10 N 1.34779 * 120.00042 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99748 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46715 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50354 * 55.06237 * 12 11 10 14 14 C 1.53046 * 109.49906 * 175.16236 * 12 11 10 15 15 C 1.53037 * 109.54000 * 181.31400 * 14 12 11 16 16 C 1.53186 * 109.31331 * 298.63445 * 15 14 12 17 17 N 1.46919 * 108.77872 * 54.63362 * 16 15 14 18 18 C 1.36940 * 120.63355 * 126.36966 * 17 16 15 19 19 H 1.08000 * 120.00307 * 208.01995 * 18 17 16 20 20 C 1.38813 * 119.99605 * 28.02354 * 18 17 16 21 21 N 1.31619 * 120.00252 * 17.52931 * 20 18 17 22 22 Si 1.86801 * 119.99889 * 197.52242 * 20 18 17 23 23 H 1.48508 * 109.46771 * 94.06788 * 22 20 18 24 24 H 1.48492 * 109.47241 * 214.06909 * 22 20 18 25 25 H 1.48497 * 109.47034 * 334.06933 * 22 20 18 26 26 C 1.46928 * 118.73887 * 306.39419 * 17 16 15 27 27 C 1.50699 * 109.47415 * 274.99976 * 5 4 2 28 28 N 1.34775 * 120.00293 * 180.02562 * 27 5 4 29 29 O 1.21290 * 119.99439 * 359.72408 * 27 5 4 30 30 H 1.08999 * 109.46965 * 269.99943 * 1 2 3 31 31 H 1.08994 * 109.47104 * 29.99627 * 1 2 3 32 32 H 1.08998 * 109.46930 * 149.99886 * 1 2 3 33 33 H 0.96997 * 120.00192 * 0.02562 * 4 2 1 34 34 H 1.08992 * 109.47169 * 54.99323 * 7 5 4 35 35 H 1.09001 * 109.47201 * 175.00226 * 7 5 4 36 36 H 0.97002 * 119.99947 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47183 * 299.99738 * 11 10 8 38 38 H 1.08990 * 109.47581 * 59.99915 * 11 10 8 39 39 H 1.09005 * 109.45400 * 301.33676 * 14 12 11 40 40 H 1.08994 * 109.45874 * 61.29170 * 14 12 11 41 41 H 1.08999 * 109.49717 * 178.67831 * 15 14 12 42 42 H 1.09004 * 109.49721 * 58.58529 * 15 14 12 43 43 H 1.09008 * 109.58586 * 294.84998 * 16 15 14 44 44 H 1.08999 * 109.70615 * 174.49339 * 16 15 14 45 45 H 0.96997 * 119.99956 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58874 * 293.81586 * 26 17 16 47 47 H 1.09005 * 109.70788 * 173.46244 * 26 17 16 48 48 H 0.96995 * 120.00149 * 0.02562 * 28 27 5 49 49 H 0.97001 * 120.00056 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5884 7 6 4.1562 -2.4746 0.6080 8 6 3.7581 -2.5414 2.0600 9 8 3.1279 -1.6329 2.5583 10 7 4.1015 -3.6112 2.8044 11 6 3.7140 -3.6763 4.2157 12 6 4.2244 -4.9836 4.8249 13 1 5.2998 -5.0634 4.6665 14 6 3.9259 -4.9987 6.3259 15 6 4.4652 -6.2915 6.9421 16 6 3.7635 -7.4911 6.2976 17 7 3.9231 -7.4052 4.8397 18 6 4.4384 -8.4575 4.1309 19 1 4.9668 -8.2787 3.2061 20 6 4.2816 -9.7541 4.6012 21 7 3.3692 -10.0178 5.5125 22 14 5.3653 -11.1247 3.9405 23 1 6.5398 -11.3004 4.8322 24 1 4.5885 -12.3892 3.8901 25 1 5.8291 -10.7739 2.5742 26 6 3.5199 -6.1684 4.1565 27 6 4.1478 -1.0430 -1.4166 28 7 5.4727 -1.0219 -1.6625 29 8 3.3592 -0.9675 -2.3351 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6960 -2.0072 -0.0013 34 1 3.7214 -3.3188 0.0729 35 1 5.2425 -2.5136 0.5270 36 1 4.6053 -4.3379 2.4057 37 1 4.1488 -2.8323 4.7512 38 1 2.6278 -3.6370 4.2965 39 1 4.4059 -4.1425 6.8000 40 1 2.8487 -4.9435 6.4824 41 1 4.2731 -6.2909 8.0150 42 1 5.5385 -6.3593 6.7642 43 1 2.7033 -7.4735 6.5507 44 1 4.2105 -8.4167 6.6602 45 1 3.2594 -10.9239 5.8408 46 1 2.4399 -6.0431 4.2350 47 1 3.8064 -6.2186 3.1060 48 1 6.1033 -1.0871 -0.9284 49 1 5.7957 -0.9424 -2.5737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661744527.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -104.996222 kcal Electronic energy + Delta-G solvation = -30156.773735 eV Core-core repulsion = 25925.718155 eV Total energy + Delta-G solvation = -4231.055580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.82971 -39.55755 -38.88047 -37.89803 -35.30927 -34.78147 -34.07555 -33.11326 -31.79174 -30.56325 -30.47269 -29.23057 -26.32578 -25.38028 -24.58210 -22.21017 -21.42469 -21.02650 -20.60087 -20.44823 -19.16408 -18.29951 -17.48611 -17.06748 -16.93651 -16.49155 -16.19132 -15.75367 -15.44825 -15.10232 -14.92152 -14.78027 -14.48857 -14.02109 -13.87526 -13.60505 -13.51729 -13.43906 -13.04235 -12.87187 -12.58651 -12.42463 -12.30739 -12.25815 -12.18763 -11.93350 -11.37648 -11.09192 -10.80306 -10.59601 -10.57698 -10.30741 -10.26389 -10.11093 -10.04211 -10.01321 -9.96392 -9.65284 -9.50575 -9.24974 -9.05654 -8.54427 -6.76294 -5.87225 -3.30513 2.23171 2.46951 2.51958 2.86107 3.03257 3.30767 3.37790 3.39440 3.41500 4.12785 4.39545 4.41822 4.63749 4.67507 4.84200 4.94925 5.03288 5.08735 5.20956 5.28611 5.31746 5.35386 5.37379 5.53527 5.68256 5.74082 5.85411 5.90758 6.10514 6.13939 6.23230 6.28952 6.37759 6.41467 6.50177 6.61623 6.68246 6.77548 6.86732 6.92303 7.30682 7.31720 7.42099 7.59449 7.70379 7.88682 8.09823 8.12190 8.36025 9.12207 9.75786 10.32478 11.20996 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.002377 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.285539 B =11774.307447 C =12699.129152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.550 6.550 4 N -0.699 5.699 5 C 0.146 3.854 6 H 0.124 0.876 7 C -0.151 4.151 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.155 3.845 27 C 0.508 3.492 28 N -0.854 5.854 29 O -0.530 6.530 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.049 0.951 48 H 0.402 0.598 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 15.134 -8.296 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.427 6.427 4 N -0.350 5.350 5 C 0.036 3.964 6 H 0.141 0.859 7 C -0.192 4.192 8 C 0.294 3.706 9 O -0.408 6.408 10 N -0.373 5.373 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.028 3.972 27 C 0.291 3.709 28 N -0.418 5.418 29 O -0.404 6.404 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.239 0.761 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.068 0.932 48 H 0.230 0.770 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.640 16.402 -8.321 18.465 hybrid contribution 1.113 -1.678 -0.457 2.065 sum 2.753 14.724 -8.778 17.362 Atomic orbital electron populations 1.21834 0.91428 1.04800 1.04836 1.20676 0.90629 0.83097 0.74128 1.90689 1.70784 1.31444 1.49773 1.45463 1.04717 1.09418 1.75451 1.20463 0.83234 1.00020 0.92681 0.85876 1.21977 1.04089 0.98485 0.94612 1.20244 0.80066 0.82464 0.87826 1.90766 1.39401 1.37366 1.73274 1.46076 1.57427 1.21652 1.12126 1.21474 1.00239 0.98192 0.79702 1.21965 1.01171 0.94192 0.96542 0.90868 1.21339 1.00649 0.97822 0.93968 1.22165 1.00653 0.96826 0.98434 1.20797 0.96482 0.95573 0.82866 1.44032 1.73292 1.11836 1.02190 1.19156 1.27996 0.84901 1.06527 0.91728 1.25048 0.97547 0.97330 0.99590 1.70040 1.31930 1.19572 1.32859 0.86290 0.80180 0.81775 0.78578 1.21446 1.21757 1.20404 1.20882 0.95346 0.86189 0.94786 1.21102 0.82699 0.75305 0.91827 1.43852 1.07254 1.77799 1.12940 1.90751 1.55304 1.48361 1.46023 0.88661 0.88972 0.90141 0.76088 0.87337 0.86935 0.76136 0.91928 0.91526 0.93441 0.92478 0.93153 0.92752 0.96437 0.89595 0.93562 0.96424 0.93222 0.76975 0.76604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.30 36.01 0.37 -1.08 16 2 C 0.53 6.66 7.77 -10.98 -0.09 6.57 16 3 O -0.55 -9.14 16.76 5.55 0.09 -9.05 16 4 N -0.70 -7.37 3.75 -54.93 -0.21 -7.58 16 5 C 0.15 1.39 1.94 -69.08 -0.13 1.26 16 6 H 0.12 1.37 7.39 -51.93 -0.38 0.99 16 7 C -0.15 -1.02 5.19 -27.88 -0.14 -1.16 16 8 C 0.51 5.27 7.69 -10.98 -0.08 5.19 16 9 O -0.53 -7.55 15.35 5.56 0.09 -7.47 16 10 N -0.72 -7.43 5.33 -60.29 -0.32 -7.76 16 11 C 0.13 1.60 5.07 -4.04 -0.02 1.58 16 12 C -0.12 -1.73 2.38 -90.50 -0.22 -1.94 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 14 C -0.10 -1.51 5.17 -26.69 -0.14 -1.65 16 15 C -0.14 -2.51 6.08 -26.62 -0.16 -2.67 16 16 C 0.17 3.80 5.31 -3.72 -0.02 3.78 16 17 N -0.59 -13.70 2.99 -172.32 -0.52 -14.22 16 18 C -0.26 -6.58 9.58 -15.06 -0.14 -6.72 16 19 H 0.07 1.61 7.89 -52.49 -0.41 1.19 16 20 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 21 N -0.90 -25.19 11.22 55.49 0.62 -24.56 16 22 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.15 2.84 5.60 -3.71 -0.02 2.82 16 27 C 0.51 5.10 7.46 -10.99 -0.08 5.02 16 28 N -0.85 -4.88 8.74 31.22 0.27 -4.61 16 29 O -0.53 -7.57 17.16 5.55 0.10 -7.48 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 3.41 8.60 -40.82 -0.35 3.06 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.41 7.42 -51.93 -0.39 0.02 16 36 H 0.40 3.58 7.69 -40.82 -0.31 3.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.09 2.20 6.06 -51.93 -0.31 1.88 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 0.85 7.13 -51.93 -0.37 0.48 16 48 H 0.40 1.11 8.19 -40.82 -0.33 0.78 16 49 H 0.40 1.98 8.93 -40.82 -0.36 1.62 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -36.94 400.12 -7.70 -44.64 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.86 Total: 5.39 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.96 Total: 11.00 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.15 Total: -58.72 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.27 Total: -23.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.94 -7.70 -44.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661744527.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.359 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds