Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21286 * 120.00449 * 2 1 4 4 N 1.34777 * 119.99931 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00064 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47644 * 34.99477 * 5 4 2 7 7 C 1.52996 * 109.47531 * 155.00311 * 5 4 2 8 8 C 1.50706 * 109.46704 * 295.00042 * 7 5 4 9 9 O 1.21284 * 120.00017 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00015 * 179.97438 * 8 7 5 11 11 C 1.46504 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46663 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50113 * 305.05838 * 12 11 10 14 14 C 1.53047 * 109.49123 * 184.99799 * 12 11 10 15 15 C 1.53045 * 109.53519 * 178.68231 * 14 12 11 16 16 C 1.53188 * 109.31531 * 61.36524 * 15 14 12 17 17 N 1.46932 * 108.77488 * 305.36432 * 16 15 14 18 18 C 1.36933 * 120.63278 * 233.60838 * 17 16 15 19 19 H 1.08000 * 120.00301 * 151.82222 * 18 17 16 20 20 C 1.38811 * 120.00002 * 331.82261 * 18 17 16 21 21 N 1.31622 * 120.00017 * 343.08701 * 20 18 17 22 22 Si 1.86801 * 120.00107 * 163.07885 * 20 18 17 23 23 H 1.48502 * 109.46794 * 60.00716 * 22 20 18 24 24 H 1.48503 * 109.47122 * 180.02562 * 22 20 18 25 25 H 1.48490 * 109.47228 * 300.00537 * 22 20 18 26 26 C 1.46929 * 118.73534 * 53.60647 * 17 16 15 27 27 C 1.50710 * 109.47171 * 275.00040 * 5 4 2 28 28 N 1.34771 * 119.99884 * 179.97438 * 27 5 4 29 29 O 1.21279 * 119.99802 * 0.02562 * 27 5 4 30 30 H 1.08996 * 109.47308 * 270.00062 * 1 2 3 31 31 H 1.09007 * 109.46903 * 29.99876 * 1 2 3 32 32 H 1.09001 * 109.47703 * 149.99897 * 1 2 3 33 33 H 0.96998 * 120.00072 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47487 * 175.00271 * 7 5 4 35 35 H 1.08999 * 109.47253 * 54.99258 * 7 5 4 36 36 H 0.96993 * 119.99816 * 359.97438 * 10 8 7 37 37 H 1.08990 * 109.47232 * 59.99701 * 11 10 8 38 38 H 1.08999 * 109.46504 * 299.99546 * 11 10 8 39 39 H 1.08995 * 109.45925 * 298.69895 * 14 12 11 40 40 H 1.08996 * 109.46206 * 58.67673 * 14 12 11 41 41 H 1.09003 * 109.49821 * 181.31431 * 15 14 12 42 42 H 1.08997 * 109.49566 * 301.41278 * 15 14 12 43 43 H 1.09003 * 109.59036 * 65.14897 * 16 15 14 44 44 H 1.09002 * 109.59320 * 185.58022 * 16 15 14 45 45 H 0.97004 * 120.00103 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.58308 * 186.60246 * 26 17 16 47 47 H 1.09003 * 109.58774 * 66.18699 * 26 17 16 48 48 H 0.96999 * 120.00555 * 359.97438 * 28 27 5 49 49 H 0.97000 * 119.99614 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0095 -0.3255 0.5883 7 6 4.1561 -2.4747 0.6079 8 6 3.7579 -2.5415 2.0599 9 8 3.1285 -1.6325 2.5585 10 7 4.1014 -3.6112 2.8044 11 6 3.7138 -3.6764 4.2157 12 6 4.2242 -4.9838 4.8248 13 1 3.8622 -5.8258 4.2348 14 6 3.7145 -5.1107 6.2623 15 6 4.1972 -6.4336 6.8615 16 6 5.7288 -6.4487 6.8886 17 7 6.2284 -6.1825 5.5326 18 6 7.1171 -7.0367 4.9363 19 1 7.1405 -7.1269 3.8603 20 6 7.9879 -7.7867 5.7147 21 7 8.2025 -7.4530 6.9697 22 14 8.8551 -9.2698 4.9813 23 1 9.6859 -8.8375 3.8288 24 1 9.7234 -9.8949 6.0111 25 1 7.8451 -10.2562 4.5210 26 6 5.7561 -4.9824 4.8288 27 6 4.1476 -1.0431 -1.4168 28 7 5.4725 -1.0211 -1.6625 29 8 3.3591 -0.9621 -2.3347 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6958 -2.0072 -0.0013 34 1 5.2424 -2.5137 0.5269 35 1 3.7212 -3.3189 0.0729 36 1 4.6044 -4.3383 2.4055 37 1 2.6276 -3.6372 4.2964 38 1 4.1487 -2.8324 4.7511 39 1 4.0967 -4.2815 6.8576 40 1 2.6248 -5.0875 6.2646 41 1 3.8145 -6.5341 7.8772 42 1 3.8360 -7.2622 6.2524 43 1 6.0899 -5.6774 7.5689 44 1 6.0789 -7.4257 7.2216 45 1 8.8108 -7.9773 7.5138 46 1 6.1242 -4.9919 3.8028 47 1 6.1194 -4.0915 5.3411 48 1 6.1032 -1.0848 -0.9283 49 1 5.7955 -0.9408 -2.5736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661744528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -104.892247 kcal Electronic energy + Delta-G solvation = -30113.243652 eV Core-core repulsion = 25882.192581 eV Total energy + Delta-G solvation = -4231.051071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.83403 -39.55825 -38.89056 -37.89515 -35.31668 -34.78299 -34.06627 -33.11143 -31.80364 -30.56453 -30.47270 -29.25225 -26.32559 -25.37730 -24.58008 -22.20491 -21.43007 -21.02870 -20.60282 -20.45613 -19.15939 -18.28809 -17.49785 -17.08579 -16.91645 -16.49286 -16.18803 -15.79660 -15.40546 -15.11806 -14.93076 -14.78184 -14.47496 -14.08588 -13.82570 -13.63993 -13.48912 -13.45128 -13.06548 -12.86169 -12.59695 -12.44513 -12.32680 -12.25472 -12.17522 -11.94680 -11.37504 -11.08253 -10.77782 -10.60648 -10.58482 -10.33067 -10.26171 -10.11285 -10.04137 -10.02199 -9.95922 -9.64711 -9.50892 -9.26558 -9.05471 -8.54053 -6.75505 -5.86810 -3.30482 2.23485 2.47127 2.50486 2.84364 3.02711 3.30923 3.37930 3.38133 3.42431 4.12677 4.39632 4.42279 4.62956 4.66161 4.83467 4.95886 5.03570 5.04581 5.21242 5.24949 5.30940 5.35162 5.37858 5.53826 5.64190 5.74457 5.85556 5.90979 6.08562 6.14442 6.23519 6.29220 6.37965 6.42841 6.50389 6.62034 6.68457 6.77915 6.87190 6.93963 7.28363 7.32415 7.42071 7.59768 7.69988 7.89323 8.09883 8.10435 8.36494 9.12515 9.76035 10.32892 11.21355 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002354 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.343607 B =11890.485012 C =13293.219817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.548 6.548 4 N -0.699 5.699 5 C 0.146 3.854 6 H 0.125 0.875 7 C -0.151 4.151 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.155 3.845 27 C 0.509 3.491 28 N -0.853 5.853 29 O -0.531 6.531 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.255 0.745 46 H 0.049 0.951 47 H 0.018 0.982 48 H 0.403 0.597 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 8.212 -12.183 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.425 6.425 4 N -0.350 5.350 5 C 0.036 3.964 6 H 0.142 0.858 7 C -0.191 4.191 8 C 0.294 3.706 9 O -0.408 6.408 10 N -0.373 5.373 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 C 0.291 3.709 28 N -0.418 5.418 29 O -0.406 6.406 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.239 0.761 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.232 0.768 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.108 9.586 -12.134 19.040 hybrid contribution 1.119 -1.667 -0.477 2.064 sum -9.989 7.919 -12.611 17.931 Atomic orbital electron populations 1.21828 0.91483 1.04758 1.04779 1.20666 0.90602 0.83134 0.74218 1.90699 1.70746 1.31431 1.49618 1.45450 1.04748 1.09318 1.75529 1.20477 0.83126 1.00116 0.92729 0.85782 1.21977 1.04288 0.98338 0.94543 1.20246 0.80049 0.82456 0.87851 1.90766 1.39547 1.37195 1.73300 1.46074 1.57404 1.21760 1.12039 1.21475 0.99395 0.98966 0.79773 1.21963 0.99795 0.95253 0.96855 0.90884 1.21340 0.98598 0.98916 0.94927 1.22172 1.00861 0.96172 0.98896 1.20803 0.87419 1.01603 0.85875 1.44024 1.49789 1.22731 1.14807 1.19090 1.11206 1.17025 0.91312 0.91825 1.25054 0.97188 1.00699 0.96561 1.70024 1.37676 1.39100 1.07657 0.86381 0.79175 0.83093 0.78151 1.20888 1.21602 1.21023 1.20887 0.89791 0.90337 0.96198 1.21085 0.82720 0.75312 0.91775 1.43861 1.07264 1.77634 1.13014 1.90741 1.55335 1.48506 1.46056 0.88701 0.88958 0.90227 0.76246 0.86755 0.87518 0.76143 0.91950 0.91506 0.92471 0.93460 0.93161 0.92762 0.96421 0.89578 0.93495 0.93216 0.96391 0.76842 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.30 36.00 0.37 -0.99 16 2 C 0.53 6.49 7.77 -10.99 -0.09 6.40 16 3 O -0.55 -9.07 16.76 5.55 0.09 -8.98 16 4 N -0.70 -7.09 3.75 -54.93 -0.21 -7.30 16 5 C 0.15 1.38 1.94 -69.08 -0.13 1.25 16 6 H 0.12 1.41 7.39 -51.93 -0.38 1.03 16 7 C -0.15 -1.01 5.19 -27.88 -0.14 -1.16 16 8 C 0.51 5.27 7.69 -10.98 -0.08 5.19 16 9 O -0.53 -7.56 15.35 5.55 0.09 -7.47 16 10 N -0.72 -7.44 5.33 -60.29 -0.32 -7.76 16 11 C 0.13 1.60 5.07 -4.04 -0.02 1.58 16 12 C -0.12 -1.73 2.37 -90.50 -0.21 -1.95 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 14 C -0.10 -1.51 5.17 -26.68 -0.14 -1.65 16 15 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 16 C 0.17 3.81 5.30 -3.71 -0.02 3.79 16 17 N -0.59 -13.71 2.99 -172.31 -0.52 -14.23 16 18 C -0.26 -6.59 9.58 -15.06 -0.14 -6.73 16 19 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -25.18 11.20 55.49 0.62 -24.56 16 22 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.15 2.84 5.60 -3.71 -0.02 2.82 16 27 C 0.51 5.12 7.46 -10.98 -0.08 5.03 16 28 N -0.85 -5.15 8.73 31.22 0.27 -4.88 16 29 O -0.53 -7.51 17.16 5.56 0.10 -7.42 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.40 3.11 8.60 -40.82 -0.35 2.75 16 34 H 0.11 0.47 7.43 -51.93 -0.39 0.09 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.40 3.58 7.71 -40.82 -0.31 3.26 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.05 0.85 7.15 -51.93 -0.37 0.48 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.40 1.35 8.19 -40.82 -0.33 1.02 16 49 H 0.40 2.09 8.93 -40.82 -0.36 1.73 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -36.89 400.12 -7.70 -44.60 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.86 Total: 5.41 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.96 Total: 10.93 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.15 Total: -58.72 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.27 Total: -23.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.89 -7.70 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661744528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.296 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds