Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 119.99761 * 2 1 4 4 N 1.34780 * 120.00109 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99812 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47098 * 35.00100 * 5 4 2 7 7 C 1.53005 * 109.47102 * 155.00068 * 5 4 2 8 8 C 1.50700 * 109.46720 * 295.00040 * 7 5 4 9 9 O 1.21280 * 120.00305 * 359.97438 * 8 7 5 10 10 N 1.34781 * 119.99462 * 179.97438 * 8 7 5 11 11 C 1.46921 * 120.63136 * 359.72723 * 10 8 7 12 12 C 1.52764 * 109.00494 * 233.58101 * 11 10 8 13 13 C 1.53047 * 109.38261 * 305.58401 * 12 11 10 14 14 C 1.53045 * 109.53432 * 61.24338 * 13 12 11 15 15 H 1.08997 * 109.49988 * 58.58611 * 14 13 12 16 16 N 1.46498 * 109.51925 * 178.66854 * 14 13 12 17 17 C 1.46494 * 120.00240 * 59.85477 * 16 14 13 18 18 C 1.36936 * 119.99639 * 239.84931 * 16 14 13 19 19 H 1.08005 * 120.00170 * 22.06996 * 18 16 14 20 20 C 1.38819 * 120.00106 * 202.07217 * 18 16 14 21 21 N 1.31614 * 119.99617 * 12.40136 * 20 18 16 22 22 Si 1.86799 * 120.00108 * 192.40071 * 20 18 16 23 23 H 1.48505 * 109.46820 * 59.99801 * 22 20 18 24 24 H 1.48492 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47157 * 300.00256 * 22 20 18 26 26 C 1.46925 * 120.62840 * 180.02562 * 10 8 7 27 27 C 1.50702 * 109.47323 * 274.99928 * 5 4 2 28 28 N 1.34776 * 120.00077 * 179.97438 * 27 5 4 29 29 O 1.21282 * 119.99713 * 0.02562 * 27 5 4 30 30 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47153 * 299.99723 * 1 2 3 32 32 H 1.08992 * 109.47318 * 59.99502 * 1 2 3 33 33 H 0.96994 * 120.00145 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.46989 * 54.99975 * 7 5 4 35 35 H 1.09000 * 109.47054 * 174.99643 * 7 5 4 36 36 H 1.09000 * 109.58992 * 353.40900 * 11 10 8 37 37 H 1.08995 * 109.59203 * 113.84314 * 11 10 8 38 38 H 1.09001 * 109.56733 * 185.55176 * 12 11 10 39 39 H 1.09002 * 109.36358 * 65.49437 * 12 11 10 40 40 H 1.08999 * 109.45870 * 301.22345 * 13 12 11 41 41 H 1.08995 * 109.45745 * 181.26037 * 13 12 11 42 42 H 1.08999 * 109.47481 * 94.30854 * 17 16 14 43 43 H 1.09008 * 109.47048 * 214.29974 * 17 16 14 44 44 H 1.08999 * 109.47493 * 334.29921 * 17 16 14 45 45 H 0.97001 * 120.00043 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58786 * 246.15954 * 26 10 8 47 47 H 1.09001 * 109.58883 * 6.57888 * 26 10 8 48 48 H 0.97002 * 119.99898 * 179.97438 * 28 27 5 49 49 H 0.96999 * 120.00321 * 359.72616 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1562 -2.4746 0.6080 8 6 3.7580 -2.5413 2.0600 9 8 3.1285 -1.6325 2.5586 10 7 4.1015 -3.6111 2.8044 11 6 4.8587 -4.7226 2.2130 12 6 4.1115 -6.0289 2.4754 13 6 3.8523 -6.1731 3.9768 14 6 2.9813 -5.0110 4.4597 15 1 2.0416 -5.0067 3.9074 16 7 2.7070 -5.1663 5.8903 17 6 3.8143 -5.2031 6.8487 18 6 1.4155 -5.2771 6.3317 19 1 0.6397 -5.6044 5.6552 20 6 1.1032 -4.9687 7.6487 21 7 1.9810 -4.3433 8.4040 22 14 -0.5629 -5.4412 8.3488 23 1 -0.7304 -6.9150 8.2760 24 1 -0.6469 -5.0033 9.7652 25 1 -1.6357 -4.7817 7.5618 26 6 3.7201 -3.6909 4.2210 27 6 4.1477 -1.0430 -1.4167 28 7 5.4727 -1.0209 -1.6624 29 8 3.3592 -0.9620 -2.3346 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6959 -2.0072 -0.0005 34 1 3.7214 -3.3188 0.0729 35 1 5.2424 -2.5136 0.5269 36 1 4.9553 -4.5681 1.1383 37 1 5.8482 -4.7734 2.6673 38 1 4.7122 -6.8693 2.1276 39 1 3.1611 -6.0150 1.9418 40 1 4.8018 -6.1620 4.5119 41 1 3.3389 -7.1154 4.1678 42 1 3.9855 -4.2021 7.2448 43 1 3.5649 -5.8794 7.6664 44 1 4.7164 -5.5551 6.3484 45 1 1.7630 -4.1280 9.3243 46 1 4.6147 -3.6555 4.8429 47 1 3.0658 -2.8557 4.4709 48 1 5.7957 -0.9413 -2.5736 49 1 6.1033 -1.0809 -0.9279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662863811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -84.341307 kcal Electronic energy + Delta-G solvation = -31158.982586 eV Core-core repulsion = 26928.822670 eV Total energy + Delta-G solvation = -4230.159916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.80896 -39.73030 -38.79060 -37.58806 -35.17987 -35.01813 -34.02236 -32.52214 -31.63693 -31.28115 -29.51405 -28.59385 -26.10901 -25.99934 -24.53946 -23.38291 -21.76364 -21.26778 -20.47998 -19.68516 -18.72591 -18.15937 -17.44504 -16.98271 -16.79985 -16.51144 -16.07481 -15.64443 -15.21763 -14.99447 -14.91572 -14.66294 -14.24844 -14.01556 -13.84108 -13.75668 -13.54447 -13.22888 -13.02822 -12.71343 -12.59555 -12.41794 -12.24761 -12.14868 -11.95134 -11.85404 -11.23176 -11.07423 -10.82614 -10.68992 -10.52303 -10.45923 -10.41098 -10.24746 -10.02188 -9.91847 -9.89597 -9.82648 -9.65967 -9.14228 -8.63068 -8.40174 -6.80946 -5.75868 -3.22008 2.28679 2.61914 2.65846 2.94555 3.05690 3.37749 3.42923 3.43477 3.45874 4.21718 4.31285 4.46004 4.69704 4.72575 4.79654 4.91366 5.00068 5.03348 5.18218 5.20190 5.38919 5.39743 5.44084 5.45013 5.49610 5.67157 5.80573 5.82948 5.91348 6.03655 6.15411 6.21293 6.29775 6.42390 6.45341 6.58234 6.71318 6.86586 6.90708 6.96332 7.34295 7.42292 7.54915 7.67893 7.77572 7.93259 8.23965 8.25498 8.36291 9.19643 9.82162 10.30064 11.28864 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003052 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.012615 B = 9171.626029 C =10539.082350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.528 3.472 3 O -0.551 6.551 4 N -0.698 5.698 5 C 0.145 3.855 6 H 0.124 0.876 7 C -0.147 4.147 8 C 0.507 3.493 9 O -0.525 6.525 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.134 4.134 14 C 0.169 3.831 15 H 0.064 0.936 16 N -0.591 5.591 17 C 0.162 3.838 18 C -0.259 4.259 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.906 5.906 22 Si 0.906 3.094 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.098 3.902 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.530 6.530 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.404 0.596 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.044 0.956 44 H -0.001 1.001 45 H 0.254 0.746 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.402 0.598 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -0.506 -18.791 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.316 3.684 3 O -0.428 6.428 4 N -0.349 5.349 5 C 0.035 3.965 6 H 0.141 0.859 7 C -0.188 4.188 8 C 0.293 3.707 9 O -0.401 6.401 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.174 4.174 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.313 5.313 17 C 0.017 3.983 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.736 3.264 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.025 4.025 27 C 0.292 3.708 28 N -0.419 5.419 29 O -0.405 6.405 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.239 0.761 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.017 0.983 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.233 0.767 49 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.304 0.839 -18.732 20.507 hybrid contribution -0.429 -0.770 0.508 1.017 sum 7.874 0.069 -18.224 19.852 Atomic orbital electron populations 1.21793 0.91417 1.04333 1.05140 1.20671 0.90628 0.83084 0.74031 1.90685 1.70730 1.31447 1.49928 1.45489 1.04667 1.09396 1.75379 1.20491 0.83343 1.00186 0.92522 0.85855 1.22001 1.03624 0.98075 0.95100 1.20216 0.80325 0.82500 0.87610 1.90789 1.39323 1.37010 1.72955 1.48305 1.54950 1.18470 1.12146 1.21670 0.95226 0.86865 0.97929 1.21834 1.00570 0.96241 0.98407 1.22098 1.01061 1.00873 0.93345 1.20606 0.95910 0.90485 0.87003 0.91814 1.43924 1.03577 1.84152 0.99626 1.20795 0.86303 0.99922 0.91253 1.19172 0.85347 1.38957 0.95327 0.91423 1.25021 0.97736 0.98650 0.98006 1.70053 1.34772 1.42244 1.07976 0.86318 0.83780 0.78242 0.78090 1.21083 1.21605 1.20878 1.22573 1.00080 1.01999 0.77885 1.21136 0.82649 0.75202 0.91855 1.43857 1.07288 1.77950 1.12822 1.90740 1.55314 1.48357 1.46080 0.90537 0.88532 0.88871 0.76142 0.87728 0.87266 0.90498 0.91355 0.91180 0.91754 0.92231 0.91680 0.95325 0.93690 0.98296 0.93615 0.92055 0.88982 0.76697 0.76994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.39 36.00 0.37 -1.36 16 2 C 0.53 7.59 7.77 -10.99 -0.09 7.50 16 3 O -0.55 -10.09 16.76 5.55 0.09 -9.99 16 4 N -0.70 -8.47 3.75 -54.93 -0.21 -8.68 16 5 C 0.14 1.57 1.94 -69.08 -0.13 1.44 16 6 H 0.12 1.59 7.39 -51.93 -0.38 1.20 16 7 C -0.15 -1.19 3.54 -27.88 -0.10 -1.29 16 8 C 0.51 6.62 7.56 -10.98 -0.08 6.54 16 9 O -0.52 -9.32 14.77 5.56 0.08 -9.24 16 10 N -0.60 -7.92 2.98 -173.06 -0.52 -8.43 16 11 C 0.11 0.98 6.31 -3.93 -0.02 0.95 16 12 C -0.13 -1.37 6.06 -26.83 -0.16 -1.53 16 13 C -0.13 -1.99 5.13 -26.68 -0.14 -2.13 16 14 C 0.17 3.20 2.74 -67.83 -0.19 3.01 16 15 H 0.06 1.28 7.86 -51.93 -0.41 0.87 16 16 N -0.59 -14.07 2.82 -173.37 -0.49 -14.56 16 17 C 0.16 3.79 7.91 59.84 0.47 4.26 16 18 C -0.26 -6.92 9.60 -15.06 -0.14 -7.07 16 19 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 20 C 0.00 0.13 5.11 -17.43 -0.09 0.04 16 21 N -0.91 -26.00 10.63 55.49 0.59 -25.41 16 22 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 C 0.10 1.74 5.79 -3.74 -0.02 1.72 16 27 C 0.51 5.41 7.46 -10.98 -0.08 5.33 16 28 N -0.85 -5.16 8.73 31.22 0.27 -4.89 16 29 O -0.53 -7.81 17.16 5.56 0.10 -7.72 16 30 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 31 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 4.03 8.44 -40.82 -0.34 3.69 16 34 H 0.10 0.66 7.68 -51.93 -0.40 0.26 16 35 H 0.11 0.52 7.25 -51.93 -0.38 0.14 16 36 H 0.08 0.45 5.93 -51.93 -0.31 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.73 7.41 -51.93 -0.39 0.35 16 43 H 0.04 1.15 7.20 -51.92 -0.37 0.77 16 44 H 0.00 -0.03 6.45 -51.93 -0.34 -0.36 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.06 1.11 7.51 -51.92 -0.39 0.72 16 47 H 0.09 1.98 7.01 -51.93 -0.36 1.62 16 48 H 0.40 2.01 8.93 -40.82 -0.36 1.65 16 49 H 0.40 1.28 8.20 -40.82 -0.33 0.94 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -37.88 392.67 -7.19 -45.07 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.61 Total: 3.93 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -0.40 Total: 17.40 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.35 Total: -61.97 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.27 Total: -26.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.88 -7.19 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662863811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.268 kcal (2) G-P(sol) polarization free energy of solvation -37.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds