Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99609 * 2 1 4 4 N 1.34777 * 120.00443 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99995 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47663 * 34.99525 * 5 4 2 7 7 C 1.53003 * 109.46857 * 154.99942 * 5 4 2 8 8 C 1.50695 * 109.46991 * 294.99542 * 7 5 4 9 9 O 1.21283 * 120.00226 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00421 * 180.02562 * 8 7 5 11 11 C 1.46931 * 120.62543 * 359.97438 * 10 8 7 12 12 C 1.53190 * 108.77527 * 126.41408 * 11 10 8 13 13 C 1.53038 * 109.31543 * 54.63505 * 12 11 10 14 14 C 1.53077 * 109.65594 * 298.70065 * 13 12 11 15 15 H 1.09001 * 109.38964 * 301.27181 * 14 13 12 16 16 N 1.46507 * 109.62337 * 181.16950 * 14 13 12 17 17 C 1.46497 * 119.99693 * 300.10793 * 16 14 13 18 18 C 1.36932 * 120.00088 * 120.10382 * 16 14 13 19 19 H 1.08003 * 119.99816 * 22.00609 * 18 16 14 20 20 C 1.38810 * 120.00137 * 202.00115 * 18 16 14 21 21 N 1.31616 * 119.99926 * 12.70225 * 20 18 16 22 22 Si 1.86803 * 120.00103 * 192.69687 * 20 18 16 23 23 H 1.48499 * 109.46877 * 60.00178 * 22 20 18 24 24 H 1.48501 * 109.47085 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46902 * 300.00159 * 22 20 18 26 26 C 1.46920 * 120.63727 * 180.02562 * 10 8 7 27 27 C 1.50705 * 109.46897 * 274.99621 * 5 4 2 28 28 N 1.34776 * 119.99763 * 180.02562 * 27 5 4 29 29 O 1.21279 * 119.99583 * 359.97438 * 27 5 4 30 30 H 1.09000 * 109.47281 * 239.99550 * 1 2 3 31 31 H 1.09004 * 109.47590 * 0.02562 * 1 2 3 32 32 H 1.09009 * 109.46890 * 120.00105 * 1 2 3 33 33 H 0.97001 * 119.99317 * 359.97438 * 4 2 1 34 34 H 1.09001 * 109.46722 * 174.99650 * 7 5 4 35 35 H 1.08994 * 109.47411 * 54.99919 * 7 5 4 36 36 H 1.09004 * 109.58444 * 246.19869 * 11 10 8 37 37 H 1.08998 * 109.58955 * 6.62718 * 11 10 8 38 38 H 1.09004 * 109.49991 * 174.58242 * 12 11 10 39 39 H 1.09005 * 109.49710 * 294.68178 * 12 11 10 40 40 H 1.09000 * 109.46491 * 58.65055 * 13 12 11 41 41 H 1.08999 * 109.46164 * 178.62865 * 13 12 11 42 42 H 1.09002 * 109.47305 * 94.32314 * 17 16 14 43 43 H 1.09006 * 109.46811 * 214.32453 * 17 16 14 44 44 H 1.09001 * 109.47073 * 334.31960 * 17 16 14 45 45 H 0.97002 * 120.00080 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58528 * 353.37453 * 26 10 8 47 47 H 1.08993 * 109.59023 * 113.65386 * 26 10 8 48 48 H 0.96999 * 119.99970 * 359.97438 * 28 27 5 49 49 H 0.97003 * 119.99651 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1670 0.0000 6 1 4.0090 -0.3256 0.5901 7 6 4.1557 -2.4748 0.6090 8 6 3.7565 -2.5421 2.0606 9 8 3.1259 -1.6338 2.5589 10 7 4.1002 -3.6116 2.8052 11 6 4.8636 -4.7200 2.2156 12 6 6.1073 -4.9734 3.0733 13 6 5.6824 -5.2051 4.5251 14 6 4.9730 -3.9583 5.0593 15 1 5.6448 -3.1026 4.9910 16 7 4.5913 -4.1706 6.4577 17 6 3.6896 -5.2694 6.8121 18 6 5.0774 -3.3420 7.4335 19 1 5.4323 -2.3549 7.1763 20 6 5.1141 -3.7706 8.7533 21 7 4.9228 -5.0413 9.0380 22 14 5.4351 -2.5441 10.1252 23 1 4.3767 -1.5025 10.1155 24 1 5.4246 -3.2492 11.4320 25 1 6.7598 -1.9056 9.9183 26 6 3.7179 -3.6920 4.2215 27 6 4.1487 -1.0423 -1.4152 28 7 5.4739 -1.0211 -1.6600 29 8 3.3609 -0.9619 -2.3337 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8901 33 1 1.6959 -2.0072 -0.0005 34 1 5.2421 -2.5137 0.5287 35 1 3.7214 -3.3187 0.0732 36 1 4.2459 -5.6179 2.1934 37 1 5.1661 -4.4570 1.2020 38 1 6.6316 -5.8542 2.7027 39 1 6.7676 -4.1076 3.0212 40 1 5.0025 -6.0557 4.5732 41 1 6.5636 -5.4098 5.1331 42 1 4.2758 -6.1420 7.1003 43 1 3.0565 -4.9654 7.6458 44 1 3.0653 -5.5183 5.9539 45 1 4.9480 -5.3408 9.9603 46 1 3.2644 -2.7505 4.5315 47 1 3.0051 -4.5045 4.3620 48 1 6.1039 -1.0858 -0.9253 49 1 5.7975 -0.9412 -2.5710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662863812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -84.819029 kcal Electronic energy + Delta-G solvation = -31009.433065 eV Core-core repulsion = 26779.252434 eV Total energy + Delta-G solvation = -4230.180631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.85374 -39.77157 -38.83799 -37.59665 -35.18987 -35.06769 -34.04403 -32.51046 -31.67718 -31.31096 -29.55952 -28.61590 -26.16011 -25.98170 -24.54760 -23.42768 -21.73872 -21.31414 -20.51318 -19.72345 -18.74772 -18.17273 -17.48674 -17.05913 -16.80121 -16.53851 -16.09004 -15.68013 -15.37720 -15.05083 -14.90141 -14.65033 -14.21414 -14.11316 -13.85841 -13.72290 -13.46023 -13.22501 -13.14724 -12.74026 -12.67882 -12.46058 -12.26158 -12.23819 -12.01744 -11.89271 -11.12759 -11.00505 -10.89502 -10.69672 -10.55670 -10.47443 -10.37821 -10.19640 -10.03684 -9.95998 -9.93164 -9.88457 -9.68722 -9.19249 -8.66685 -8.42616 -6.81016 -5.75891 -3.21912 2.25930 2.57424 2.58772 2.89310 2.99247 3.38164 3.42062 3.43385 3.45737 4.17740 4.27238 4.46787 4.66782 4.69744 4.75343 4.85699 4.97545 5.04931 5.16934 5.20924 5.30589 5.37018 5.39650 5.45285 5.49276 5.68529 5.73841 5.76823 5.89738 6.06510 6.14583 6.15724 6.29346 6.43053 6.43823 6.55197 6.71363 6.86681 6.92783 6.94835 7.34293 7.35743 7.48469 7.67945 7.78224 7.91050 8.18096 8.18700 8.36170 9.19861 9.82367 10.29955 11.28882 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002755 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.281583 B =10159.209354 C =11023.148511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.526 3.474 3 O -0.547 6.547 4 N -0.700 5.700 5 C 0.145 3.855 6 H 0.125 0.875 7 C -0.147 4.147 8 C 0.509 3.491 9 O -0.527 6.527 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.133 4.133 14 C 0.170 3.830 15 H 0.064 0.936 16 N -0.592 5.592 17 C 0.163 3.837 18 C -0.257 4.257 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.908 5.908 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.097 3.903 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.531 6.531 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.403 0.597 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.044 0.956 44 H -0.003 1.003 45 H 0.253 0.747 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.402 0.598 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 -0.732 -21.260 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.314 3.686 3 O -0.424 6.424 4 N -0.351 5.351 5 C 0.035 3.965 6 H 0.142 0.858 7 C -0.188 4.188 8 C 0.295 3.705 9 O -0.403 6.403 10 N -0.337 5.337 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.173 4.173 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.314 5.314 17 C 0.018 3.982 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.027 4.027 27 C 0.292 3.708 28 N -0.419 5.419 29 O -0.406 6.406 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.237 0.763 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.231 0.769 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.323 0.476 -21.221 21.268 hybrid contribution 0.633 -0.119 0.838 1.056 sum -0.691 0.357 -20.384 20.398 Atomic orbital electron populations 1.21874 0.91465 1.05497 1.04258 1.20664 0.90618 0.83107 0.74187 1.90695 1.70828 1.31430 1.49476 1.45393 1.04693 1.09331 1.75662 1.20494 0.83180 1.00223 0.92604 0.85786 1.21995 1.03802 0.98056 0.94937 1.20199 0.80350 0.82239 0.87687 1.90777 1.39715 1.36854 1.73000 1.48195 1.54596 1.19066 1.11841 1.21788 0.93433 0.89863 0.96612 1.21933 0.96560 1.01760 0.96876 1.22135 1.01340 1.00196 0.93615 1.20576 0.92568 0.95747 0.85067 0.91767 1.43875 1.52642 1.34484 1.00371 1.20790 0.91631 0.90920 0.94849 1.19189 1.37612 0.94642 0.87187 0.91414 1.24980 1.00740 0.95724 0.98002 1.70058 1.54303 1.12857 1.18059 0.86327 0.78285 0.80485 0.81402 1.20987 1.21635 1.20939 1.22453 0.99421 1.03159 0.77654 1.21116 0.82674 0.75216 0.91815 1.43861 1.07289 1.77785 1.12920 1.90737 1.55378 1.48481 1.46027 0.89159 0.89019 0.89444 0.76269 0.87088 0.87773 0.91291 0.90465 0.91225 0.91729 0.92463 0.91444 0.95220 0.93758 0.98418 0.93691 0.89156 0.91841 0.76909 0.76659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.32 36.00 0.37 -1.20 16 2 C 0.53 7.08 7.77 -10.99 -0.09 6.99 16 3 O -0.55 -9.68 16.75 5.56 0.09 -9.59 16 4 N -0.70 -7.82 3.75 -54.93 -0.21 -8.02 16 5 C 0.15 1.50 1.94 -69.08 -0.13 1.37 16 6 H 0.12 1.56 7.39 -51.93 -0.38 1.18 16 7 C -0.15 -1.13 3.53 -27.88 -0.10 -1.23 16 8 C 0.51 6.29 7.56 -10.99 -0.08 6.20 16 9 O -0.53 -8.81 14.77 5.55 0.08 -8.73 16 10 N -0.60 -7.56 2.97 -172.74 -0.51 -8.07 16 11 C 0.11 0.97 6.34 -3.71 -0.02 0.94 16 12 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 13 C -0.13 -2.10 5.15 -26.67 -0.14 -2.24 16 14 C 0.17 3.22 2.74 -67.76 -0.19 3.03 16 15 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 16 N -0.59 -14.14 2.82 -173.29 -0.49 -14.63 16 17 C 0.16 3.81 8.03 59.85 0.48 4.29 16 18 C -0.26 -6.92 9.60 -15.06 -0.14 -7.06 16 19 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 20 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 21 N -0.91 -25.84 10.64 55.49 0.59 -25.25 16 22 Si 0.91 21.73 29.57 -169.99 -5.03 16.70 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.10 1.61 5.78 -3.69 -0.02 1.59 16 27 C 0.51 5.26 7.46 -10.98 -0.08 5.18 16 28 N -0.85 -5.12 8.74 31.22 0.27 -4.85 16 29 O -0.53 -7.60 17.16 5.56 0.10 -7.51 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 34 H 0.11 0.53 6.98 -51.93 -0.36 0.17 16 35 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.92 7.71 -51.93 -0.40 0.52 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 43 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 44 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.09 1.77 7.01 -51.93 -0.36 1.40 16 47 H 0.06 1.07 6.49 -51.93 -0.34 0.73 16 48 H 0.40 1.34 8.19 -40.82 -0.33 1.00 16 49 H 0.40 2.00 8.93 -40.82 -0.36 1.64 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -37.69 393.02 -7.19 -44.88 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.62 Total: 2.84 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -0.39 Total: 16.30 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.35 Total: -60.82 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.27 Total: -25.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.69 -7.19 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662863812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.937 kcal (2) G-P(sol) polarization free energy of solvation -37.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds