Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47250 * 2 1 4 4 C 1.34778 * 120.00013 * 179.97438 * 3 2 1 5 5 O 1.21273 * 120.00037 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99576 * 180.02562 * 4 3 2 7 7 C 1.50702 * 109.46791 * 180.02562 * 6 4 3 8 8 O 1.21278 * 120.00109 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00086 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00336 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47334 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.78832 * 303.20296 * 11 10 9 13 13 C 1.54595 * 110.72583 * 66.45262 * 11 10 9 14 14 C 1.53993 * 105.14494 * 140.31750 * 13 11 10 15 15 N 1.47908 * 107.22336 * 1.12240 * 14 13 11 16 16 C 1.46897 * 111.00072 * 214.25473 * 15 14 13 17 17 C 1.50703 * 109.47306 * 176.61381 * 16 15 14 18 18 O 1.21296 * 119.99416 * 6.14417 * 17 16 15 19 19 N 1.34774 * 120.00292 * 186.13956 * 17 16 15 20 20 C 1.37094 * 119.99583 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00525 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99524 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99922 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47295 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47291 * 120.00045 * 24 22 20 27 27 H 1.48502 * 109.47342 * 240.00118 * 24 22 20 28 28 C 1.48811 * 105.67826 * 334.90819 * 15 14 13 29 29 H 1.09003 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47250 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.47017 * 59.99831 * 1 2 3 32 32 H 1.09006 * 109.47396 * 240.00191 * 2 1 3 33 33 H 1.09001 * 109.47531 * 120.00064 * 2 1 3 34 34 H 0.96998 * 119.99597 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47489 * 60.00158 * 6 4 3 36 36 H 1.09001 * 109.47382 * 299.99836 * 6 4 3 37 37 H 0.97003 * 119.99702 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47310 * 59.99054 * 10 9 7 39 39 H 1.09001 * 109.46729 * 299.99743 * 10 9 7 40 40 H 1.09001 * 110.31099 * 21.39852 * 13 11 10 41 41 H 1.09003 * 110.31099 * 259.22872 * 13 11 10 42 42 H 1.08994 * 109.92289 * 120.57427 * 14 13 11 43 43 H 1.09009 * 109.91688 * 241.67970 * 14 13 11 44 44 H 1.08996 * 109.47542 * 296.62245 * 16 15 14 45 45 H 1.09010 * 109.46875 * 56.61739 * 16 15 14 46 46 H 0.97003 * 119.99922 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99530 * 180.02562 * 23 22 20 48 48 H 1.08994 * 110.51834 * 280.53989 * 28 15 14 49 49 H 1.09006 * 110.69606 * 157.49055 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0483 0.0011 7 6 5.3527 3.0483 0.0010 8 8 5.9591 1.9980 0.0009 9 7 6.0266 4.2155 0.0020 10 6 7.4915 4.2156 0.0013 11 6 8.0015 5.6580 0.0020 12 1 7.6040 6.2093 -0.8501 13 6 7.6399 6.3655 1.3281 14 6 8.8753 7.2144 1.6811 15 7 9.8650 7.0182 0.5997 16 6 11.2354 7.0512 1.1279 17 6 12.2099 6.7657 0.0144 18 8 11.8136 6.6660 -1.1276 19 7 13.5218 6.6214 0.2875 20 6 14.4083 6.3622 -0.7256 21 1 14.0556 6.2742 -1.7426 22 6 15.7609 6.2129 -0.4440 23 7 16.1900 6.3196 0.7935 24 14 16.9690 5.8605 -1.8244 25 1 16.2383 5.7878 -3.1152 26 1 17.9792 6.9470 -1.8874 27 1 17.6498 4.5659 -1.5680 28 6 9.5506 5.6919 0.0025 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4820 3.5619 0.8911 36 1 3.4826 3.5624 -0.8889 37 1 5.5416 5.0556 0.0024 38 1 7.8545 3.7026 -0.8893 39 1 7.8552 3.7008 0.8906 40 1 7.4504 5.6300 2.1099 41 1 6.7682 7.0053 1.1902 42 1 8.5974 8.2665 1.7437 43 1 9.2937 6.8837 2.6318 44 1 11.4400 8.0366 1.5462 45 1 11.3427 6.2964 1.9070 46 1 13.8387 6.7009 1.2008 47 1 17.1341 6.2157 0.9900 48 1 9.9527 4.8895 0.6209 49 1 9.9371 5.6260 -1.0146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663575849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -104.531872 kcal Electronic energy + Delta-G solvation = -28719.801905 eV Core-core repulsion = 24488.766461 eV Total energy + Delta-G solvation = -4231.035444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55661 -39.47768 -38.77844 -37.57065 -35.63602 -34.94174 -33.88447 -32.41981 -31.64944 -31.14573 -30.05688 -29.10188 -26.98001 -25.17755 -23.99606 -23.40495 -21.51811 -21.10472 -20.36460 -20.11132 -19.16135 -17.85498 -17.64476 -17.20155 -16.55660 -16.31759 -16.03061 -15.67695 -15.48990 -15.26377 -14.97429 -14.58975 -14.42199 -14.16398 -13.79695 -13.74462 -13.64732 -13.48426 -13.10726 -12.90439 -12.69675 -12.48190 -12.32667 -12.18370 -12.01899 -11.87960 -11.71004 -11.49006 -11.21160 -11.02295 -11.01279 -10.77650 -10.57893 -10.37640 -10.32149 -10.20839 -9.60351 -9.47640 -9.44658 -9.16865 -8.40661 -8.01193 -7.91092 -6.40314 -3.80904 2.32017 2.51479 2.56748 3.17990 3.19359 3.28666 3.35900 3.91837 4.05986 4.17309 4.26244 4.44559 4.57862 4.59283 4.60779 4.73080 4.77257 4.80442 4.83586 4.89606 5.15651 5.23261 5.26955 5.33071 5.33866 5.42377 5.49182 5.54555 5.72010 5.73452 5.75880 5.80921 5.88104 5.93905 6.03488 6.09865 6.21804 6.28953 6.34476 6.54376 7.07600 7.17465 7.26424 7.32995 7.57087 7.92035 8.07989 8.15178 8.63096 9.19724 9.55818 10.07368 10.77531 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.001635 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.520954 B =17122.344211 C =18076.199202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.491 6.491 6 C -0.165 4.165 7 C 0.508 3.492 8 O -0.495 6.495 9 N -0.730 5.730 10 C 0.130 3.870 11 C -0.105 4.105 12 H 0.090 0.910 13 C -0.125 4.125 14 C 0.032 3.968 15 N -0.493 5.493 16 C 0.037 3.963 17 C 0.442 3.558 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.049 3.951 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.041 0.959 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.739 -3.106 3.873 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.394 5.394 4 C 0.293 3.707 5 O -0.362 6.362 6 C -0.208 4.208 7 C 0.291 3.709 8 O -0.367 6.367 9 N -0.384 5.384 10 C 0.007 3.993 11 C -0.125 4.125 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.096 4.096 15 N -0.217 5.217 16 C -0.094 4.094 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.079 4.079 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -30.750 -4.280 2.794 31.172 hybrid contribution 0.400 0.229 0.731 0.864 sum -30.350 -4.051 3.524 30.821 Atomic orbital electron populations 1.22001 0.94407 1.03317 1.02462 1.21277 0.94119 0.82945 1.02558 1.46047 1.06903 1.08923 1.77509 1.20039 0.82306 0.90896 0.77453 1.90891 1.54376 1.45442 1.45483 1.21590 0.95511 0.97128 1.06588 1.19923 0.88885 0.84197 0.77862 1.90889 1.69296 1.30482 1.45996 1.45970 1.07640 1.08181 1.76626 1.21357 0.78692 0.96503 1.02789 1.22362 0.97244 0.94256 0.98599 0.89185 1.22481 0.98035 0.98725 0.97066 1.22908 0.92572 1.00440 0.93681 1.64585 1.01029 1.30130 1.25998 1.22082 0.89207 1.01932 0.96217 1.19712 0.83232 0.84592 0.89699 1.90488 1.77912 1.55911 1.21973 1.41870 1.05197 1.62251 1.10694 1.19756 0.87313 1.45020 0.90694 0.87827 1.25261 0.97848 0.97453 0.97372 1.69621 1.16268 1.50190 1.18227 0.85804 0.79872 0.77844 0.80851 1.19202 1.20765 1.20783 1.23318 0.92005 0.89563 1.03013 0.90759 0.91977 0.91965 0.91490 0.91510 0.76790 0.86142 0.86096 0.76799 0.90966 0.91379 0.91435 0.91203 0.90517 0.93968 0.89155 0.93447 0.77502 0.91940 0.94087 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 10.03 37.15 0.37 -0.10 16 2 C 0.11 0.68 6.39 -4.04 -0.03 0.66 16 3 N -0.74 -4.26 5.56 -60.29 -0.33 -4.60 16 4 C 0.51 4.88 7.82 -10.98 -0.09 4.80 16 5 O -0.49 -7.68 14.18 -18.95 -0.27 -7.95 16 6 C -0.17 -1.00 6.19 -29.03 -0.18 -1.18 16 7 C 0.51 5.61 7.82 -10.98 -0.09 5.52 16 8 O -0.49 -8.43 14.18 -18.96 -0.27 -8.70 16 9 N -0.73 -6.44 5.40 -60.30 -0.33 -6.76 16 10 C 0.13 1.49 5.00 -4.05 -0.02 1.47 16 11 C -0.11 -1.20 3.13 -88.76 -0.28 -1.48 16 12 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.12 -1.21 6.20 -25.38 -0.16 -1.37 16 14 C 0.03 0.39 6.69 -2.75 -0.02 0.37 16 15 N -0.49 -8.11 5.11 -231.64 -1.18 -9.30 16 16 C 0.04 0.67 5.31 -4.98 -0.03 0.65 16 17 C 0.44 10.47 7.42 -10.99 -0.08 10.39 16 18 O -0.58 -15.49 13.89 5.54 0.08 -15.41 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.05 0.79 5.05 -1.74 -0.01 0.78 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 0.87 8.47 -40.82 -0.35 0.53 16 35 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.15 8.33 -40.82 -0.34 1.81 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.07 0.62 7.80 -51.93 -0.41 0.22 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.49 7.68 -51.92 -0.40 0.10 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.05 0.79 7.99 -51.92 -0.41 0.38 16 46 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 49 H 0.11 2.12 6.46 -51.93 -0.34 1.78 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -38.58 403.55 -9.39 -47.97 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.98 Total: 8.35 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.84 Total: 12.50 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -1.18 Total: -59.09 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.46 Total: -32.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.58 -9.39 -47.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663575849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.559 kcal (2) G-P(sol) polarization free energy of solvation -38.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds