Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 119.99820 * 2 1 4 4 N 1.34782 * 119.99940 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99928 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47078 * 34.99796 * 5 4 2 7 7 C 1.52998 * 109.47200 * 154.99809 * 5 4 2 8 8 C 1.50696 * 109.47114 * 295.00191 * 7 5 4 9 9 O 1.21279 * 120.00459 * 359.97438 * 8 7 5 10 10 N 1.34783 * 119.99977 * 179.97438 * 8 7 5 11 11 C 1.46497 * 120.00139 * 175.57260 * 10 8 7 12 12 C 1.52998 * 109.46993 * 174.05864 * 11 10 8 13 13 C 1.52991 * 109.47435 * 54.05439 * 11 10 8 14 14 N 1.46507 * 109.47123 * 59.99770 * 13 11 10 15 15 C 1.36931 * 119.99957 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00644 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00106 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99756 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00433 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47334 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47146 * 120.00217 * 19 17 15 22 22 H 1.48498 * 109.47499 * 240.00328 * 19 17 15 23 23 C 1.53000 * 109.46728 * 294.05182 * 11 10 8 24 24 C 1.52999 * 117.50058 * 2.16714 * 23 11 10 25 25 C 1.52993 * 117.50410 * 293.50012 * 23 11 10 26 26 C 1.50699 * 109.47289 * 275.00261 * 5 4 2 27 27 N 1.34773 * 120.00178 * 180.02562 * 26 5 4 28 28 O 1.21287 * 119.99667 * 359.97438 * 26 5 4 29 29 H 1.08993 * 109.47331 * 239.99833 * 1 2 3 30 30 H 1.09000 * 109.46905 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46652 * 120.00331 * 1 2 3 32 32 H 0.96992 * 119.99644 * 0.02562 * 4 2 1 33 33 H 1.09004 * 109.47042 * 174.99751 * 7 5 4 34 34 H 1.09006 * 109.46522 * 54.99942 * 7 5 4 35 35 H 0.97003 * 119.99314 * 355.56842 * 10 8 7 36 36 H 1.08996 * 109.47661 * 59.99698 * 12 11 10 37 37 H 1.09004 * 109.47125 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.46788 * 299.99527 * 12 11 10 39 39 H 1.08994 * 109.47632 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47286 * 300.00455 * 13 11 10 41 41 H 0.97005 * 119.99750 * 0.02562 * 14 13 11 42 42 H 0.97000 * 119.99988 * 179.97438 * 18 17 15 43 43 H 1.09000 * 115.54574 * 147.83077 * 23 11 10 44 44 H 1.08998 * 117.49650 * 359.97438 * 24 23 11 45 45 H 1.08998 * 117.50231 * 145.01705 * 24 23 11 46 46 H 1.08996 * 117.50432 * 214.97776 * 25 23 11 47 47 H 1.09001 * 117.49444 * 0.02562 * 25 23 11 48 48 H 0.96995 * 120.00118 * 359.97438 * 27 26 5 49 49 H 0.97005 * 120.00171 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3253 0.5905 7 6 4.1557 -2.4744 0.6112 8 6 3.7564 -2.5405 2.0628 9 8 3.1266 -1.6314 2.5606 10 7 4.0993 -3.6099 2.8081 11 6 3.7966 -3.6315 4.2413 12 6 4.1514 -5.0040 4.8168 13 6 2.3057 -3.3600 4.4518 14 7 1.5204 -4.3927 3.7712 15 6 0.1525 -4.3569 3.8215 16 1 -0.3476 -3.5671 4.3625 17 6 -0.5916 -5.3356 3.1771 18 7 0.0177 -6.2984 2.5182 19 14 -2.4576 -5.2873 3.2462 20 1 -2.8932 -4.1132 4.0444 21 1 -3.0013 -5.1779 1.8687 22 1 -2.9620 -6.5319 3.8800 23 6 4.6168 -2.5530 4.9519 24 6 5.5118 -1.6621 4.0880 25 6 6.1359 -2.7306 4.9893 26 6 4.1488 -1.0437 -1.4141 27 7 5.4740 -1.0228 -1.6590 28 8 3.3610 -0.9640 -2.3328 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 5.2421 -2.5135 0.5310 34 1 3.7212 -3.3188 0.0761 35 1 4.5464 -4.3654 2.3953 36 1 5.2135 -5.1974 4.6669 37 1 3.9266 -5.0199 5.8833 38 1 3.5671 -5.7723 4.3105 39 1 2.0804 -3.3765 5.5181 40 1 2.0530 -2.3822 4.0417 41 1 1.9695 -5.1023 3.2856 42 1 -0.5022 -6.9826 2.0683 43 1 4.1418 -2.0975 5.8208 44 1 5.5166 -1.8447 3.0135 45 1 5.6260 -0.6207 4.3888 46 1 6.6605 -2.3916 5.8826 47 1 6.5511 -3.6156 4.5072 48 1 6.1040 -1.0869 -0.9243 49 1 5.7977 -0.9436 -2.5700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666027426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -63.575611 kcal Electronic energy + Delta-G solvation = -32130.595243 eV Core-core repulsion = 27901.335796 eV Total energy + Delta-G solvation = -4229.259447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.75593 -39.89367 -38.56493 -37.37953 -35.06197 -34.65622 -33.84866 -33.39410 -31.82322 -30.95887 -29.66140 -28.73335 -26.10181 -25.27852 -23.73275 -22.19811 -21.46467 -21.18685 -20.52582 -20.16292 -19.06897 -18.07022 -17.33199 -17.20421 -16.68937 -16.45211 -15.95689 -15.74798 -15.40169 -14.75906 -14.69911 -14.54620 -14.35498 -13.93770 -13.73622 -13.36289 -13.22334 -13.20244 -12.89388 -12.71091 -12.24746 -12.16291 -12.08532 -11.90868 -11.82001 -11.67159 -11.33164 -11.14956 -10.90750 -10.82269 -10.79338 -10.31545 -10.25714 -10.06368 -9.89619 -9.85279 -9.69179 -9.64930 -9.34871 -8.90076 -8.73360 -8.62727 -6.83927 -5.76648 -3.01902 2.47305 2.85476 2.93464 3.19340 3.34287 3.42733 3.50076 3.51274 3.68151 3.94564 4.44847 4.58184 4.66500 4.79975 4.93408 4.98866 5.04188 5.08175 5.21526 5.22800 5.39946 5.52094 5.53360 5.60517 5.65042 5.65813 5.70469 5.71451 5.91882 5.99924 6.10690 6.11278 6.19350 6.25695 6.32360 6.47987 6.57383 6.60008 6.61807 6.90535 7.12577 7.16920 7.70883 7.73452 7.83887 8.10747 8.43427 8.49420 8.57794 9.55094 10.13551 10.49291 11.46657 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007898 B = 0.005150 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.366733 B = 5435.234897 C = 7695.207095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.531 3.469 3 O -0.557 6.557 4 N -0.695 5.695 5 C 0.150 3.850 6 H 0.121 0.879 7 C -0.152 4.152 8 C 0.520 3.480 9 O -0.505 6.505 10 N -0.715 5.715 11 C 0.201 3.799 12 C -0.148 4.148 13 C 0.138 3.862 14 N -0.725 5.725 15 C -0.225 4.225 16 H 0.068 0.932 17 C -0.016 4.016 18 N -0.937 5.937 19 Si 0.902 3.098 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.143 4.143 24 C -0.163 4.163 25 C -0.183 4.183 26 C 0.507 3.493 27 N -0.856 5.856 28 O -0.529 6.529 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.395 0.605 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.380 0.620 42 H 0.252 0.748 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.400 0.600 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.976 5.548 -2.450 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.319 3.681 3 O -0.435 6.435 4 N -0.347 5.347 5 C 0.040 3.960 6 H 0.139 0.861 7 C -0.193 4.193 8 C 0.305 3.695 9 O -0.380 6.380 10 N -0.367 5.367 11 C 0.115 3.885 12 C -0.205 4.205 13 C 0.010 3.990 14 N -0.369 5.369 15 C -0.356 4.356 16 H 0.086 0.914 17 C -0.211 4.211 18 N -0.587 5.587 19 Si 0.734 3.266 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.163 4.163 24 C -0.200 4.200 25 C -0.220 4.220 26 C 0.290 3.710 27 N -0.421 5.421 28 O -0.403 6.403 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.245 0.755 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.228 0.772 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 15.073 7.087 -2.486 16.840 hybrid contribution -0.410 -1.236 -0.362 1.351 sum 14.662 5.851 -2.848 16.042 Atomic orbital electron populations 1.21877 0.91527 1.05075 1.04799 1.20633 0.90615 0.83003 0.73832 1.90651 1.70941 1.31537 1.50386 1.45431 1.04474 1.09719 1.75045 1.20396 0.83582 0.99820 0.92230 0.86096 1.22005 1.03162 0.98627 0.95543 1.19875 0.79579 0.82853 0.87158 1.90732 1.37138 1.37585 1.72517 1.45951 1.61789 1.19759 1.09205 1.20049 0.95722 0.93952 0.78739 1.21985 1.00560 0.95804 1.02168 1.21203 0.86938 0.95214 0.95623 1.42230 1.02893 1.29296 1.62489 1.19260 0.82748 1.07587 1.26051 0.91416 1.24637 0.97545 0.97902 1.01037 1.69645 1.33854 1.15803 1.39437 0.86179 0.86176 0.77132 0.77144 1.20654 1.22003 1.22079 1.22580 0.91348 1.00628 1.01716 1.22897 1.03875 0.95727 0.97540 1.22964 0.95791 1.01146 1.02097 1.21229 0.82562 0.75133 0.92077 1.43854 1.07318 1.78217 1.12678 1.90745 1.55354 1.48140 1.46068 0.88686 0.89337 0.89480 0.75510 0.87696 0.87552 0.77190 0.92975 0.91124 0.90752 0.96496 0.92186 0.78552 0.93807 0.87466 0.89198 0.89499 0.89385 0.89118 0.77157 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.32 36.01 0.37 -2.03 16 2 C 0.53 9.01 7.77 -10.98 -0.09 8.92 16 3 O -0.56 -11.15 16.75 5.55 0.09 -11.05 16 4 N -0.70 -10.51 3.75 -54.93 -0.21 -10.72 16 5 C 0.15 1.91 1.94 -69.08 -0.13 1.78 16 6 H 0.12 1.69 7.39 -51.93 -0.38 1.30 16 7 C -0.15 -1.52 5.19 -27.89 -0.14 -1.67 16 8 C 0.52 7.02 4.73 -10.98 -0.05 6.97 16 9 O -0.51 -8.73 11.69 5.56 0.06 -8.66 16 10 N -0.72 -9.02 4.17 -47.61 -0.20 -9.22 16 11 C 0.20 2.91 0.55 -131.83 -0.07 2.84 16 12 C -0.15 -1.97 8.18 37.16 0.30 -1.67 16 13 C 0.14 2.72 4.81 -4.04 -0.02 2.70 16 14 N -0.72 -17.01 5.18 -59.91 -0.31 -17.32 16 15 C -0.22 -6.08 9.99 -15.06 -0.15 -6.23 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.94 -26.96 13.06 55.49 0.72 -26.24 16 19 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 C -0.14 -1.85 4.89 -90.62 -0.44 -2.29 16 24 C -0.16 -1.90 8.62 -26.69 -0.23 -2.13 16 25 C -0.18 -1.86 9.68 -26.69 -0.26 -2.12 16 26 C 0.51 6.43 7.46 -10.99 -0.08 6.35 16 27 N -0.86 -6.53 8.73 31.22 0.27 -6.26 16 28 O -0.53 -9.06 17.16 5.55 0.10 -8.96 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.41 6.07 8.60 -40.82 -0.35 5.72 16 33 H 0.10 0.62 7.43 -51.93 -0.39 0.23 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.39 4.07 8.48 -40.82 -0.35 3.73 16 36 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.17 6.86 -51.93 -0.36 0.81 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.33 5.63 -51.93 -0.29 1.04 16 41 H 0.38 9.16 6.35 -40.82 -0.26 8.90 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.11 1.46 8.06 -51.93 -0.42 1.04 16 44 H 0.09 1.01 5.21 -51.93 -0.27 0.74 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.85 7.20 -51.93 -0.37 0.47 16 48 H 0.40 1.78 8.19 -40.82 -0.33 1.45 16 49 H 0.40 2.65 8.93 -40.82 -0.36 2.28 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -37.09 397.48 -7.01 -44.10 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -7.42 Total: 20.44 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.09 Total: 10.87 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: 0.28 Total: -69.76 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.25 Total: -28.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.09 -7.01 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666027426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.478 kcal (2) G-P(sol) polarization free energy of solvation -37.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds