Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 119.99888 * 2 1 4 4 N 1.34770 * 119.99958 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00040 * 180.02562 * 4 2 1 6 6 H 1.09008 * 109.46761 * 35.00202 * 5 4 2 7 7 C 1.52997 * 109.47187 * 155.00016 * 5 4 2 8 8 C 1.50701 * 109.47444 * 295.00173 * 7 5 4 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99875 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99664 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46915 * 35.00835 * 11 10 8 13 13 C 1.53002 * 109.46729 * 155.00120 * 11 10 8 14 14 C 1.52997 * 109.46978 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47415 * 300.00098 * 14 13 11 16 16 H 1.09002 * 109.47070 * 300.00053 * 15 14 13 17 17 N 1.46505 * 109.47411 * 179.97438 * 15 14 13 18 18 C 1.36931 * 119.99990 * 155.00183 * 17 15 14 19 19 H 1.08004 * 120.00112 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00062 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99605 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00098 * 22 20 18 24 24 H 1.48499 * 109.47198 * 209.99899 * 22 20 18 25 25 H 1.48503 * 109.47263 * 329.99819 * 22 20 18 26 26 C 1.52997 * 109.46817 * 59.99873 * 15 14 13 27 27 C 1.52992 * 109.47482 * 300.00014 * 26 15 14 28 28 C 1.50695 * 109.47262 * 275.00693 * 5 4 2 29 29 N 1.34777 * 120.00043 * 179.97438 * 28 5 4 30 30 O 1.21281 * 119.99783 * 359.97438 * 28 5 4 31 31 H 1.09001 * 109.47207 * 270.00514 * 1 2 3 32 32 H 1.09000 * 109.47113 * 30.00758 * 1 2 3 33 33 H 1.09000 * 109.46905 * 150.00627 * 1 2 3 34 34 H 0.96999 * 120.00323 * 0.02562 * 4 2 1 35 35 H 1.09006 * 109.46951 * 174.99816 * 7 5 4 36 36 H 1.09006 * 109.47022 * 55.00698 * 7 5 4 37 37 H 0.97000 * 119.99923 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47097 * 60.00183 * 13 11 10 39 39 H 1.08998 * 109.47844 * 300.00398 * 13 11 10 40 40 H 1.09000 * 109.47140 * 180.02562 * 14 13 11 41 41 H 1.09002 * 109.47497 * 60.00450 * 14 13 11 42 42 H 0.97005 * 119.99239 * 335.00029 * 17 15 14 43 43 H 0.96998 * 119.99451 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47153 * 60.00231 * 26 15 14 45 45 H 1.08998 * 109.47533 * 179.97438 * 26 15 14 46 46 H 1.09002 * 109.47103 * 300.00247 * 27 26 15 47 47 H 1.08996 * 109.47747 * 179.97438 * 27 26 15 48 48 H 0.96995 * 120.00164 * 359.97438 * 29 28 5 49 49 H 0.97008 * 119.99624 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5906 7 6 4.1557 -2.4744 0.6112 8 6 3.7564 -2.5406 2.0628 9 8 3.1266 -1.6315 2.5605 10 7 4.0993 -3.6100 2.8079 11 6 3.7117 -3.6741 4.2192 12 1 2.7357 -3.2064 4.3495 13 6 3.6394 -5.1368 4.6623 14 6 3.2352 -5.2037 6.1364 15 6 4.2728 -4.4648 6.9839 16 1 5.2486 -4.9327 6.8531 17 7 3.8854 -4.5283 8.3954 18 6 4.8381 -4.4161 9.3725 19 1 5.8752 -4.2812 9.1027 20 6 4.4712 -4.4769 10.7099 21 7 3.2074 -4.6419 11.0386 22 14 5.7707 -4.3231 12.0429 23 1 5.9363 -2.8938 12.4102 24 1 5.3472 -5.0955 13.2384 25 1 7.0615 -4.8578 11.5399 26 6 4.3450 -3.0022 6.5408 27 6 4.7493 -2.9352 5.0667 28 6 4.1488 -1.0435 -1.4141 29 7 5.4740 -1.0216 -1.6588 30 8 3.3610 -0.9637 -2.3327 31 1 -0.3634 0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5137 34 1 1.6959 -2.0072 0.0005 35 1 5.2421 -2.5134 0.5309 36 1 3.7213 -3.3188 0.0760 37 1 4.6034 -4.3369 2.4099 38 1 4.6153 -5.6045 4.5319 39 1 2.9006 -5.6634 4.0583 40 1 3.1842 -6.2457 6.4522 41 1 2.2594 -4.7359 6.2672 42 1 2.9540 -4.6499 8.6376 43 1 2.9509 -4.6840 11.9732 44 1 3.3693 -2.5343 6.6715 45 1 5.0839 -2.4755 7.1447 46 1 5.7251 -3.4030 4.9359 47 1 4.8003 -1.8932 4.7509 48 1 6.1040 -1.0850 -0.9241 49 1 5.7977 -0.9423 -2.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666310328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -118.738621 kcal Electronic energy + Delta-G solvation = -29921.344271 eV Core-core repulsion = 25689.692776 eV Total energy + Delta-G solvation = -4231.651495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95521 -39.85237 -38.95577 -38.07465 -35.33220 -34.84215 -34.16626 -33.14878 -31.82988 -30.69034 -30.46440 -29.39453 -27.48139 -25.54444 -23.56719 -22.43536 -21.58209 -21.10319 -20.66052 -20.53364 -19.52403 -18.40686 -17.58944 -17.18601 -17.11130 -16.73922 -16.35434 -15.99979 -15.32193 -15.24535 -15.15127 -14.89314 -14.29258 -14.01473 -13.88481 -13.74646 -13.65055 -13.57036 -13.23969 -12.93438 -12.65384 -12.48511 -12.37035 -12.09076 -12.06384 -11.86857 -11.48723 -11.09948 -10.85008 -10.81714 -10.71275 -10.68238 -10.21904 -10.17125 -10.15152 -10.07946 -10.02138 -9.80920 -9.61966 -9.32798 -9.07751 -8.87432 -6.96235 -5.77344 -3.05948 2.13462 2.36298 2.45254 2.77476 2.88155 3.31652 3.42505 3.47531 3.49185 4.00618 4.27653 4.51638 4.57073 4.58122 4.72606 4.79910 4.88033 4.97641 5.01864 5.20411 5.22187 5.25520 5.48381 5.54395 5.62860 5.63449 5.67229 5.78670 5.81917 5.96929 6.02507 6.17811 6.18710 6.24131 6.32205 6.41888 6.51199 6.59096 6.68115 6.83062 6.94935 7.11630 7.22356 7.29882 7.68945 7.79354 8.00042 8.06191 8.41522 9.52449 10.10837 10.45143 11.45395 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.001996 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.884111 B =14023.233179 C =14407.739883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.547 6.547 4 N -0.700 5.700 5 C 0.145 3.855 6 H 0.125 0.875 7 C -0.149 4.149 8 C 0.509 3.491 9 O -0.522 6.522 10 N -0.724 5.724 11 C 0.145 3.855 12 H 0.088 0.912 13 C -0.118 4.118 14 C -0.121 4.121 15 C 0.178 3.822 16 H 0.046 0.954 17 N -0.726 5.726 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.133 4.133 27 C -0.123 4.123 28 C 0.508 3.492 29 N -0.854 5.854 30 O -0.530 6.530 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.402 0.598 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 0.504 -27.345 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.314 3.686 3 O -0.423 6.423 4 N -0.352 5.352 5 C 0.035 3.965 6 H 0.142 0.858 7 C -0.190 4.190 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.375 5.375 11 C 0.042 3.958 12 H 0.106 0.894 13 C -0.157 4.157 14 C -0.160 4.160 15 C 0.068 3.932 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.174 4.174 27 C -0.162 4.162 28 C 0.290 3.710 29 N -0.419 5.419 30 O -0.404 6.404 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.231 0.769 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.230 0.770 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.219 1.974 -27.307 27.405 hybrid contribution 1.028 -0.720 0.688 1.431 sum 2.247 1.254 -26.619 26.743 Atomic orbital electron populations 1.21836 0.91373 1.04760 1.04914 1.20685 0.90646 0.83097 0.74137 1.90700 1.70741 1.31418 1.49483 1.45446 1.04636 1.09358 1.75719 1.20469 0.83283 1.00059 0.92687 0.85775 1.21976 1.04012 0.98431 0.94597 1.20260 0.80064 0.82632 0.87727 1.90803 1.38915 1.36748 1.73214 1.46161 1.57715 1.21675 1.11921 1.21133 0.99528 0.96814 0.78341 0.89406 1.21745 1.01815 0.94471 0.97643 1.21756 1.00083 1.01500 0.92636 1.20232 0.95705 0.92108 0.85189 0.93649 1.42431 1.07944 1.87202 0.99012 1.19229 0.89596 1.41692 0.86345 0.91250 1.24745 0.96156 1.02997 0.97165 1.69662 1.14774 1.57004 1.16709 0.86211 0.80692 0.77531 0.81882 1.21745 1.21807 1.20813 1.22229 1.01601 1.00833 0.92708 1.21888 0.98039 0.99864 0.96441 1.21106 0.82697 0.75337 0.91812 1.43862 1.07257 1.77800 1.12941 1.90749 1.55364 1.48335 1.45987 0.88576 0.88922 0.90235 0.76253 0.86992 0.87609 0.76869 0.91586 0.91918 0.91357 0.91976 0.78305 0.93532 0.92508 0.91809 0.92339 0.92385 0.76959 0.76599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.30 36.01 0.37 -0.98 16 2 C 0.53 6.30 7.77 -10.99 -0.09 6.22 16 3 O -0.55 -8.89 16.76 5.56 0.09 -8.80 16 4 N -0.70 -6.56 3.75 -54.93 -0.21 -6.76 16 5 C 0.15 1.21 1.94 -69.08 -0.13 1.07 16 6 H 0.12 1.30 7.39 -51.92 -0.38 0.92 16 7 C -0.15 -0.72 5.19 -27.88 -0.14 -0.87 16 8 C 0.51 4.45 7.66 -10.98 -0.08 4.36 16 9 O -0.52 -7.02 15.02 5.56 0.08 -6.94 16 10 N -0.72 -5.65 5.08 -53.81 -0.27 -5.92 16 11 C 0.15 1.64 2.46 -67.93 -0.17 1.47 16 12 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 13 C -0.12 -1.27 5.39 -26.73 -0.14 -1.41 16 14 C -0.12 -1.80 5.39 -26.73 -0.14 -1.94 16 15 C 0.18 3.30 2.77 -67.93 -0.19 3.12 16 16 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 17 N -0.73 -17.70 5.12 -53.42 -0.27 -17.98 16 18 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.13 -2.30 5.50 -26.74 -0.15 -2.45 16 27 C -0.12 -1.65 5.49 -26.73 -0.15 -1.79 16 28 C 0.51 4.47 7.46 -10.99 -0.08 4.39 16 29 N -0.85 -3.86 8.74 31.22 0.27 -3.59 16 30 O -0.53 -6.92 17.16 5.56 0.10 -6.82 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.76 8.60 -40.82 -0.35 2.41 16 35 H 0.11 0.20 7.43 -51.93 -0.39 -0.19 16 36 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 1.86 8.60 -40.82 -0.35 1.51 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.40 0.66 8.19 -40.82 -0.33 0.32 16 49 H 0.40 1.51 8.93 -40.82 -0.36 1.14 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -39.21 404.74 -7.67 -46.88 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.92 Total: 9.85 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.34 Total: 4.05 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.24 Total: -61.51 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.27 Total: -22.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.21 -7.67 -46.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666310328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.859 kcal (2) G-P(sol) polarization free energy of solvation -39.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds