Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47398 * 2 1 4 4 C 1.46495 * 120.00214 * 279.47315 * 3 2 1 5 5 C 1.53008 * 109.46943 * 269.99634 * 4 3 2 6 6 N 1.46903 * 109.46813 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99543 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.47044 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00411 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00119 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00120 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99778 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99819 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99798 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47345 * 89.99849 * 15 13 11 17 17 H 1.48500 * 109.46988 * 209.99803 * 15 13 11 18 18 H 1.48502 * 109.47119 * 329.99830 * 15 13 11 19 19 C 1.34778 * 120.00033 * 99.46741 * 3 2 1 20 20 O 1.21280 * 120.00086 * 186.79732 * 19 3 2 21 21 C 1.50704 * 119.99798 * 6.79072 * 19 3 2 22 22 C 1.52998 * 110.43255 * 60.05479 * 21 19 3 23 23 C 1.54633 * 110.48586 * 182.59310 * 21 19 3 24 24 C 1.54473 * 101.79686 * 93.86337 * 23 21 19 25 25 N 1.46866 * 105.42670 * 25.42275 * 24 23 21 26 26 C 1.34414 * 111.30857 * 342.97624 * 25 24 23 27 27 O 1.21280 * 124.94363 * 180.44665 * 26 25 24 28 28 H 1.09003 * 109.47393 * 189.04166 * 1 2 3 29 29 H 1.09001 * 109.47194 * 309.03838 * 1 2 3 30 30 H 1.08998 * 109.47626 * 69.04419 * 1 2 3 31 31 H 1.09001 * 109.46520 * 240.00139 * 2 1 3 32 32 H 1.09000 * 109.47022 * 120.00574 * 2 1 3 33 33 H 1.09003 * 109.47187 * 29.99277 * 4 3 2 34 34 H 1.08996 * 109.47750 * 149.99761 * 4 3 2 35 35 H 1.08994 * 109.46723 * 300.00034 * 5 4 3 36 36 H 1.09002 * 109.47117 * 59.99766 * 5 4 3 37 37 H 1.00895 * 111.00072 * 303.95142 * 6 5 4 38 38 H 1.09005 * 109.46578 * 299.99960 * 7 6 5 39 39 H 1.09002 * 109.47262 * 59.99641 * 7 6 5 40 40 H 0.97001 * 119.99523 * 359.97438 * 10 8 7 41 41 H 0.97001 * 120.00073 * 180.02562 * 14 13 11 42 42 H 1.08998 * 109.47265 * 198.67921 * 22 21 19 43 43 H 1.09003 * 109.46936 * 318.67561 * 22 21 19 44 44 H 1.08997 * 109.47317 * 78.67691 * 22 21 19 45 45 H 1.08994 * 110.96595 * 212.00146 * 23 21 19 46 46 H 1.09003 * 110.96365 * 335.72767 * 23 21 19 47 47 H 1.09004 * 110.24609 * 144.43586 * 24 23 21 48 48 H 1.08999 * 110.24852 * 266.43042 * 24 23 21 49 49 H 0.97001 * 124.33583 * 162.98219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0657 2.1414 -1.2514 5 6 3.4237 1.9317 -1.9244 6 7 3.4710 2.6936 -3.1795 7 6 4.7632 2.5153 -3.8551 8 6 4.7746 3.3103 -5.1353 9 8 3.8018 3.9609 -5.4539 10 7 5.8657 3.2983 -5.9263 11 6 5.8759 4.0211 -7.0912 12 1 5.0093 4.5997 -7.3752 13 6 7.0006 4.0082 -7.9070 14 7 8.0548 3.3037 -7.5617 15 14 7.0142 4.9925 -9.4946 16 1 7.5305 6.3586 -9.2257 17 1 7.8897 4.3189 -10.4871 18 1 5.6332 5.0824 -10.0331 19 6 2.4240 1.9525 1.1513 20 8 2.7112 3.1305 1.1754 21 6 2.5207 1.1274 2.4087 22 6 3.5109 -0.0232 2.2179 23 6 2.9426 2.0117 3.6051 24 6 1.5748 2.3977 4.2103 25 7 0.6550 1.3234 3.8141 26 6 1.1587 0.5982 2.8007 27 8 0.6021 -0.3432 2.2764 28 1 -0.3634 -1.0149 0.1615 29 1 -0.3633 0.6473 0.7982 30 1 -0.3634 0.3675 -0.9596 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.2737 1.7966 -1.9162 34 1 1.9256 3.2011 -1.0383 35 1 4.2157 2.2765 -1.2596 36 1 3.5639 0.8720 -2.1375 37 1 2.7073 2.4373 -3.7870 38 1 5.5647 2.8643 -3.2040 39 1 4.9124 1.4595 -4.0812 40 1 6.6438 2.7782 -5.6714 41 1 8.8401 3.2951 -8.1310 42 1 3.3335 -0.7849 2.9771 43 1 3.3754 -0.4586 1.2278 44 1 4.5290 0.3542 2.3126 45 1 3.5386 1.4433 4.3190 46 1 3.4823 2.8957 3.2654 47 1 1.6451 2.4533 5.2967 48 1 1.2382 3.3516 3.8042 49 1 -0.2055 1.1586 4.2304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668555445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -107.387028 kcal Electronic energy + Delta-G solvation = -30326.959782 eV Core-core repulsion = 26095.800529 eV Total energy + Delta-G solvation = -4231.159253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63235 -40.25871 -40.00535 -38.21684 -37.17531 -36.43612 -35.82145 -34.26043 -33.28656 -31.98354 -30.45321 -29.56358 -27.77060 -26.58320 -25.76181 -24.46503 -23.84786 -22.84606 -21.90629 -21.10384 -19.94304 -19.51942 -18.62165 -18.41041 -17.90328 -17.60329 -17.12537 -16.66552 -16.51486 -16.43626 -15.88411 -15.68361 -15.34621 -15.28540 -15.06428 -14.90551 -14.79621 -14.37970 -14.12979 -13.87711 -13.67013 -13.59880 -13.54717 -13.45743 -13.28794 -13.17594 -12.91836 -12.76354 -12.66070 -12.42599 -12.26655 -12.13509 -12.12126 -12.07293 -11.79727 -11.51896 -10.91144 -10.63129 -10.40606 -10.06035 -10.02977 -9.81072 -9.39599 -8.47429 -5.96379 1.18648 1.37838 1.41561 1.48162 1.54626 1.86246 2.02979 2.29279 2.35101 2.94363 3.13945 3.19472 3.27873 3.46539 3.53541 3.81425 3.97326 4.03778 4.05836 4.13954 4.28661 4.35890 4.39713 4.41435 4.46164 4.55013 4.56761 4.64700 4.72538 4.74088 4.77523 4.86000 4.93647 4.98490 5.03982 5.09570 5.19954 5.33781 5.40176 5.46648 5.71102 5.82577 5.96579 6.05091 6.25612 6.36027 6.58673 6.97640 7.11265 7.14768 7.54212 8.09480 8.69979 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.001900 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.848136 B =14733.504638 C =15011.895915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 N -0.599 5.599 4 C 0.120 3.880 5 C 0.060 3.940 6 N -0.682 5.682 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.273 1.273 19 C 0.527 3.473 20 O -0.561 6.561 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.718 5.718 26 C 0.519 3.481 27 O -0.526 6.526 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.348 0.652 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.119 0.881 48 H 0.066 0.934 49 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -11.426 27.983 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 N -0.331 5.331 4 C -0.003 4.003 5 C -0.070 4.070 6 N -0.315 5.315 7 C -0.064 4.064 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.314 3.686 20 O -0.439 6.439 21 C -0.125 4.125 22 C -0.196 4.196 23 C -0.154 4.154 24 C -0.026 4.026 25 N -0.373 5.373 26 C 0.303 3.697 27 O -0.403 6.403 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.167 0.833 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.114 0.886 47 H 0.137 0.863 48 H 0.084 0.916 49 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.634 -10.295 27.669 31.379 hybrid contribution -0.048 -0.438 -1.109 1.193 sum -10.682 -10.732 26.561 30.574 Atomic orbital electron populations 1.21957 0.95435 1.02497 0.99709 1.22573 0.95291 0.80670 1.05742 1.47997 1.62872 1.15427 1.06805 1.21255 0.97030 0.97196 0.84826 1.22177 0.98184 0.95937 0.90749 1.59902 1.03834 1.60830 1.06975 1.21503 0.93796 0.98438 0.92708 1.20821 0.83600 0.85987 0.87113 1.90491 1.36423 1.48123 1.75910 1.41923 1.15078 1.43874 1.20047 1.19673 1.01621 1.26354 0.98760 0.90323 1.26066 0.94273 0.98377 1.02628 1.69671 1.04972 1.41187 1.40214 0.84909 0.78270 0.78061 0.76976 1.19694 1.19398 1.19742 1.20364 0.76210 0.87124 0.84882 1.90711 1.50596 1.17004 1.85613 1.21655 0.97067 0.98997 0.94805 1.21993 0.97915 0.95391 1.04318 1.22793 0.97779 1.00525 0.94351 1.22296 0.88148 0.89641 1.02497 1.46155 1.22767 1.32444 1.35937 1.20359 0.86770 0.82607 0.79962 1.90775 1.65175 1.28833 1.55528 0.90916 0.94017 0.94012 0.90005 0.85687 0.89150 0.91233 0.91761 0.93283 0.83317 0.88220 0.91072 0.76918 0.91243 0.89331 0.90679 0.89636 0.86301 0.88642 0.86324 0.91613 0.73775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.31 71.98 0.60 -2.00 16 2 C 0.08 1.38 4.69 86.38 0.40 1.78 16 3 N -0.60 -12.94 2.46 -821.82 -2.02 -14.95 16 4 C 0.12 2.97 5.72 86.38 0.49 3.47 16 5 C 0.06 1.54 6.01 86.31 0.52 2.06 16 6 N -0.68 -22.83 6.13 -517.91 -3.17 -26.00 16 7 C 0.07 2.43 6.17 85.55 0.53 2.96 16 8 C 0.44 21.44 7.82 87.65 0.69 22.13 16 9 O -0.62 -35.52 15.78 -3.07 -0.05 -35.57 16 10 N -0.57 -30.00 5.29 -306.98 -1.62 -31.62 16 11 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 15 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 C 0.53 12.04 6.52 87.66 0.57 12.61 16 20 O -0.56 -16.78 15.01 -3.03 -0.05 -16.83 16 21 C -0.12 -1.80 0.56 -52.93 -0.03 -1.83 16 22 C -0.14 -1.58 8.01 71.98 0.58 -1.00 16 23 C -0.12 -1.23 5.99 31.65 0.19 -1.04 16 24 C 0.10 0.81 7.79 86.81 0.68 1.49 16 25 N -0.72 -7.70 6.24 -459.60 -2.87 -10.57 16 26 C 0.52 8.18 6.16 87.90 0.54 8.72 16 27 O -0.53 -10.18 11.44 -3.03 -0.03 -10.21 16 28 H 0.07 1.29 8.01 -2.39 -0.02 1.27 16 29 H 0.04 0.91 6.32 -2.39 -0.02 0.89 16 30 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 2.07 2.46 -2.39 -0.01 2.06 16 33 H 0.09 1.98 7.98 -2.39 -0.02 1.97 16 34 H 0.07 2.11 7.34 -2.39 -0.02 2.09 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.35 11.72 8.43 -89.70 -0.76 10.97 16 38 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 41 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.09 0.75 7.99 -2.39 -0.02 0.73 16 43 H 0.07 0.94 5.28 -2.39 -0.01 0.93 16 44 H 0.08 0.82 8.07 -2.39 -0.02 0.81 16 45 H 0.12 0.59 7.91 -2.39 -0.02 0.57 16 46 H 0.10 1.38 6.93 -2.39 -0.02 1.36 16 47 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.42 3.08 8.96 -92.71 -0.83 2.25 16 Total: -1.00 -75.98 389.28 -1.78 -77.75 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.31 Total: 41.78 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 7.03 Total: 30.54 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -9.40 Total: -132.95 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.13 Total: -62.61 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.98 -1.78 -77.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668555445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.634 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds