Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47157 * 2 1 4 4 C 1.46497 * 120.00436 * 75.57168 * 3 2 1 5 5 C 1.53004 * 109.47015 * 89.99871 * 4 3 2 6 6 N 1.46894 * 109.47048 * 180.02562 * 5 4 3 7 7 C 1.46901 * 111.00093 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47226 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00509 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99920 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99980 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99956 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99793 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00193 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99906 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47357 * 59.99900 * 15 13 11 17 17 H 1.48496 * 109.47417 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47048 * 300.00092 * 15 13 11 19 19 C 1.34782 * 119.99724 * 255.57454 * 3 2 1 20 20 O 1.21279 * 119.99881 * 182.06466 * 19 3 2 21 21 C 1.50695 * 119.99801 * 2.06127 * 19 3 2 22 22 C 1.52996 * 110.43583 * 292.74125 * 21 19 3 23 23 C 1.54632 * 110.48352 * 170.20356 * 21 19 3 24 24 C 1.54482 * 101.76254 * 266.11904 * 23 21 19 25 25 N 1.46767 * 105.47463 * 334.58074 * 24 23 21 26 26 C 1.34420 * 111.29563 * 17.02171 * 25 24 23 27 27 O 1.21287 * 124.94037 * 179.62722 * 26 25 24 28 28 H 1.09002 * 109.47080 * 53.86779 * 1 2 3 29 29 H 1.08998 * 109.47046 * 173.86286 * 1 2 3 30 30 H 1.09003 * 109.47221 * 293.86672 * 1 2 3 31 31 H 1.08998 * 109.47105 * 239.99172 * 2 1 3 32 32 H 1.09005 * 109.46674 * 119.99762 * 2 1 3 33 33 H 1.08994 * 109.47641 * 210.00115 * 4 3 2 34 34 H 1.09003 * 109.47220 * 330.00334 * 4 3 2 35 35 H 1.08994 * 109.47115 * 300.00566 * 5 4 3 36 36 H 1.09003 * 109.46748 * 60.00174 * 5 4 3 37 37 H 1.00903 * 111.00483 * 303.95617 * 6 5 4 38 38 H 1.09003 * 109.46862 * 299.99688 * 7 6 5 39 39 H 1.09000 * 109.47228 * 59.99640 * 7 6 5 40 40 H 0.97002 * 120.00207 * 0.02562 * 10 8 7 41 41 H 0.97004 * 120.00401 * 180.02562 * 14 13 11 42 42 H 1.09003 * 109.47259 * 43.51568 * 22 21 19 43 43 H 1.09000 * 109.47628 * 163.51371 * 22 21 19 44 44 H 1.09004 * 109.47336 * 283.51333 * 22 21 19 45 45 H 1.08997 * 110.97260 * 24.23397 * 23 21 19 46 46 H 1.09000 * 110.96855 * 148.00444 * 23 21 19 47 47 H 1.08993 * 110.24989 * 93.58323 * 24 23 21 48 48 H 1.09008 * 110.24750 * 215.49848 * 24 23 21 49 49 H 0.96999 * 124.35154 * 197.04016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9645 2.1772 1.2286 5 6 3.2629 1.9886 2.0158 6 7 3.2087 2.7864 3.2481 7 6 4.4418 2.6301 4.0310 8 6 4.3492 3.4607 5.2851 9 8 3.3542 4.1185 5.5048 10 7 5.3722 3.4726 6.1625 11 6 5.2882 4.2286 7.3032 12 1 4.4022 4.8143 7.4987 13 6 6.3431 4.2413 8.2075 14 7 7.4209 3.5282 7.9697 15 14 6.2284 5.2708 9.7619 16 1 5.0678 4.8186 10.5707 17 1 7.4746 5.1124 10.5537 18 1 6.0511 6.6994 9.3975 19 6 2.5171 1.9196 -1.1305 20 8 2.9558 3.0502 -1.1214 21 6 2.5297 1.1166 -2.4056 22 6 3.4984 -0.0615 -2.2855 23 6 2.9139 2.0128 -3.6057 24 6 1.5275 2.4432 -4.1339 25 7 0.6019 1.3854 -3.7116 26 6 1.1369 0.6287 -2.7379 27 8 0.5836 -0.3093 -2.2039 28 1 -0.3633 0.6060 -0.8300 29 1 -0.3633 -1.0218 -0.1099 30 1 -0.3634 0.4158 0.9398 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8434 3.2302 0.9744 34 1 1.1206 1.8508 1.8364 35 1 3.3840 0.9357 2.2700 36 1 4.1069 2.3150 1.4080 37 1 3.0321 3.7583 3.0423 38 1 4.5716 1.5816 4.2990 39 1 5.2937 2.9616 3.4373 40 1 6.1682 2.9468 5.9867 41 1 8.1572 3.5367 8.6012 42 1 3.3740 -0.5365 -1.3123 43 1 3.2890 -0.7859 -3.0726 44 1 4.5224 0.2983 -2.3860 45 1 3.4919 2.8769 -3.2780 46 1 3.4588 1.4437 -4.3589 47 1 1.2358 3.3971 -3.6946 48 1 1.5449 2.5189 -5.2213 49 1 -0.2821 1.2496 -4.0870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668555446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -75.000413 kcal Electronic energy + Delta-G solvation = -30345.095047 eV Core-core repulsion = 26115.340183 eV Total energy + Delta-G solvation = -4229.754864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98490 -39.30017 -38.24536 -37.50618 -36.16715 -35.21101 -33.88164 -33.55040 -31.24536 -30.93669 -29.64273 -28.75859 -26.32628 -25.80711 -24.15422 -23.64987 -22.80892 -22.15676 -21.06360 -19.27754 -18.73745 -18.00165 -17.86168 -17.78190 -16.86086 -16.27370 -15.87545 -15.60838 -15.33322 -14.97096 -14.71539 -14.59369 -14.52007 -14.25089 -13.90155 -13.76380 -13.51832 -13.16810 -13.10270 -13.09408 -12.91320 -12.75566 -12.59088 -12.23028 -12.03546 -11.94560 -11.67240 -11.51884 -11.45940 -11.43179 -11.09713 -11.04427 -10.91286 -10.41775 -10.18582 -10.04729 -9.92216 -9.48753 -9.46934 -8.91971 -8.41713 -8.03731 -7.92720 -6.38471 -3.79237 1.90932 2.28667 2.68663 2.86305 3.22741 3.27953 3.32714 3.67628 3.87035 3.94653 4.05433 4.16903 4.33434 4.47625 4.51674 4.78804 4.88032 4.99814 5.01373 5.09174 5.15667 5.16820 5.22731 5.27529 5.32284 5.35078 5.43569 5.53830 5.54596 5.60253 5.72095 5.78917 5.87004 5.92673 5.97151 6.02952 6.15168 6.22525 6.28093 6.36984 6.50756 7.13607 7.22276 7.58090 7.67696 7.70296 7.84453 8.09429 8.64788 9.20953 9.57672 10.09364 10.79273 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026555 B = 0.001897 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.165757 B =14755.488584 C =15010.114119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 N -0.599 5.599 4 C 0.116 3.884 5 C 0.048 3.952 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.532 3.468 20 O -0.528 6.528 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.119 4.119 24 C 0.098 3.902 25 N -0.726 5.726 26 C 0.520 3.480 27 O -0.499 6.499 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.350 0.650 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -9.260 -28.361 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 N -0.331 5.331 4 C -0.007 4.007 5 C -0.083 4.083 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.318 3.682 20 O -0.405 6.405 21 C -0.125 4.125 22 C -0.196 4.196 23 C -0.157 4.157 24 C -0.026 4.026 25 N -0.382 5.382 26 C 0.304 3.696 27 O -0.374 6.374 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.130 0.870 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.764 -9.190 -27.376 30.483 hybrid contribution 0.761 0.592 0.034 0.964 sum -9.003 -8.598 -27.342 30.043 Atomic orbital electron populations 1.22085 0.95100 1.02643 1.00506 1.22509 0.95767 0.81381 1.04625 1.47990 1.60808 1.14796 1.09516 1.21438 0.98522 0.96673 0.84027 1.22233 0.96591 0.99030 0.90462 1.60017 1.35945 1.15461 1.18493 1.21653 0.90828 1.00949 0.94586 1.19798 0.85042 0.86566 0.85889 1.90519 1.31771 1.46803 1.77605 1.41856 1.16414 1.42524 1.19285 1.19658 1.03362 1.23247 0.96601 0.87970 1.25264 0.95075 0.97920 0.99741 1.69604 1.06262 1.40779 1.37746 0.85909 0.77425 0.79971 0.80850 1.19890 1.21005 1.19920 1.19760 0.77858 0.86538 0.84066 1.90713 1.46236 1.18508 1.85000 1.21574 0.96304 0.98760 0.95815 1.21921 0.98205 0.95267 1.04158 1.22743 0.97056 1.00894 0.94995 1.22155 0.88875 0.90978 1.00626 1.46096 1.19689 1.32792 1.39652 1.20261 0.87175 0.82774 0.79350 1.90823 1.66351 1.28176 1.52089 0.92071 0.91502 0.93862 0.86497 0.91290 0.89912 0.89195 0.91099 0.95099 0.83033 0.89628 0.93828 0.77452 0.91846 0.90229 0.90785 0.90476 0.87038 0.89042 0.90539 0.89677 0.74763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.18 37.16 0.30 -1.15 16 2 C 0.08 0.76 4.85 -4.04 -0.02 0.74 16 3 N -0.60 -6.66 2.51 -173.69 -0.44 -7.10 16 4 C 0.12 1.46 5.60 -4.04 -0.02 1.43 16 5 C 0.05 0.66 6.01 -3.83 -0.02 0.63 16 6 N -0.67 -11.47 6.13 -115.06 -0.70 -12.18 16 7 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 8 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 9 O -0.58 -16.29 15.78 5.55 0.09 -16.20 16 10 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 11 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 12 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 15 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.53 6.05 6.51 -10.99 -0.07 5.98 16 20 O -0.53 -7.53 15.06 5.56 0.08 -7.44 16 21 C -0.12 -0.95 0.56 -155.68 -0.09 -1.04 16 22 C -0.14 -0.90 8.03 37.16 0.30 -0.61 16 23 C -0.12 -0.70 6.06 -25.10 -0.15 -0.85 16 24 C 0.10 0.47 7.78 -3.12 -0.02 0.45 16 25 N -0.73 -4.33 6.24 -59.20 -0.37 -4.70 16 26 C 0.52 4.34 6.07 -10.86 -0.07 4.27 16 27 O -0.50 -5.03 11.00 5.55 0.06 -4.97 16 28 H 0.06 0.68 5.93 -51.93 -0.31 0.37 16 29 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 30 H 0.04 0.44 7.61 -51.93 -0.40 0.04 16 31 H 0.12 1.06 2.40 -51.93 -0.12 0.94 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.14 7.45 -51.93 -0.39 0.75 16 34 H 0.09 1.10 7.47 -51.93 -0.39 0.71 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.35 6.29 8.43 -39.29 -0.33 5.96 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 0.56 5.48 -51.93 -0.28 0.28 16 43 H 0.07 0.40 8.02 -51.93 -0.42 -0.02 16 44 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 45 H 0.11 0.81 6.87 -51.93 -0.36 0.45 16 46 H 0.09 0.35 7.91 -51.93 -0.41 -0.07 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.20 8.14 -51.92 -0.42 -0.23 16 49 H 0.41 1.78 8.96 -40.82 -0.37 1.41 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -34.39 387.82 -7.41 -41.80 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -7.40 Total: 14.18 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -0.22 Total: 13.34 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.84 Total: -62.94 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: 0.23 Total: -28.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.39 -7.41 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668555446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.200 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds