Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21279 * 119.99988 * 2 1 4 4 N 1.34778 * 120.00113 * 180.02562 * 2 1 3 5 5 C 1.46504 * 120.00171 * 179.97438 * 4 2 1 6 6 C 1.50695 * 109.47366 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00435 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64575 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.27193 * 178.90423 * 9 8 6 11 11 C 1.55161 * 102.94296 * 337.80716 * 10 9 8 12 12 H 1.09005 * 111.00179 * 277.38975 * 11 10 9 13 13 C 1.52997 * 111.00498 * 153.57813 * 11 10 9 14 14 C 1.53000 * 109.47060 * 69.58371 * 13 11 10 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 11 16 16 C 1.46906 * 110.99793 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47010 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00170 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99903 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00293 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99415 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00649 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00395 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47267 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47330 * 120.00090 * 24 22 20 27 27 H 1.48507 * 109.47083 * 239.99732 * 24 22 20 28 28 C 1.47470 * 125.63254 * 179.97438 * 8 6 5 29 29 H 1.09007 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47182 * 299.99495 * 1 2 3 31 31 H 1.08998 * 109.47252 * 59.99919 * 1 2 3 32 32 H 0.97000 * 119.99827 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.47182 * 59.99743 * 5 4 2 34 34 H 1.09007 * 109.46680 * 299.99971 * 5 4 2 35 35 H 1.09002 * 109.88340 * 59.48635 * 9 8 6 36 36 H 1.08998 * 109.88421 * 298.32289 * 9 8 6 37 37 H 1.09003 * 110.71921 * 219.44455 * 10 9 8 38 38 H 1.08996 * 110.72311 * 96.16994 * 10 9 8 39 39 H 1.09002 * 109.47153 * 309.58052 * 13 11 10 40 40 H 1.09001 * 109.46832 * 189.58243 * 13 11 10 41 41 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 43 43 H 1.00899 * 111.00283 * 56.04461 * 15 14 13 44 44 H 1.09006 * 109.46661 * 299.99622 * 16 15 14 45 45 H 1.08995 * 109.47087 * 60.00099 * 16 15 14 46 46 H 0.97000 * 119.99903 * 359.97438 * 19 17 16 47 47 H 0.97003 * 120.00211 * 180.02562 * 23 22 20 48 48 H 1.09001 * 110.34560 * 85.32657 * 28 8 6 49 49 H 1.08998 * 110.40456 * 322.98875 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0022 7 8 3.3601 -3.5098 -0.0021 8 7 5.4732 -2.8343 -0.0024 9 6 6.5340 -1.8162 -0.0010 10 6 7.8848 -2.5620 0.0264 11 6 7.5045 -3.9485 0.6100 12 1 7.4556 -3.9141 1.6984 13 6 8.4827 -5.0276 0.1417 14 6 9.8447 -4.8024 0.8014 15 7 10.7841 -5.8382 0.3513 16 6 12.1057 -5.6530 0.9653 17 6 13.0404 -6.7312 0.4805 18 8 12.6444 -7.5715 -0.2994 19 7 14.3160 -6.7623 0.9143 20 6 15.1665 -7.7428 0.4729 21 1 14.8140 -8.4905 -0.2223 22 6 16.4818 -7.7746 0.9196 23 7 16.9104 -6.8650 1.7658 24 14 17.6403 -9.1110 0.3187 25 1 16.9182 -10.0069 -0.6200 26 1 18.7943 -8.4889 -0.3789 27 1 18.1295 -9.9000 1.4778 28 6 6.0988 -4.1697 -0.0029 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6958 -2.0072 -0.0013 33 1 4.0096 -0.6535 0.8888 34 1 4.0088 -0.6531 -0.8912 35 1 6.4410 -1.1851 0.8829 36 1 6.4648 -1.2075 -0.9025 37 1 8.5943 -2.0510 0.6773 38 1 8.2889 -2.6652 -0.9806 39 1 8.5906 -4.9749 -0.9417 40 1 8.1015 -6.0097 0.4215 41 1 10.2260 -3.8203 0.5216 42 1 9.7369 -4.8551 1.8847 43 1 10.8521 -5.8519 -0.6553 44 1 12.5022 -4.6766 0.6865 45 1 12.0140 -5.7118 2.0498 46 1 14.6326 -6.0905 1.5382 47 1 17.8287 -6.8870 2.0774 48 1 6.1841 -4.5478 -1.0217 49 1 5.5214 -4.8601 0.6118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672727767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = -114.146312 kcal Electronic energy + Delta-G solvation = -27975.095791 eV Core-core repulsion = 23743.643433 eV Total energy + Delta-G solvation = -4231.452358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.86941 -39.82413 -38.48789 -38.13906 -35.91574 -34.94189 -33.97002 -33.20211 -31.25047 -31.01976 -30.26831 -29.09998 -27.40573 -25.84918 -24.07923 -23.44617 -22.21784 -21.12957 -20.65854 -19.95723 -19.21468 -18.05460 -17.89173 -17.17112 -16.87703 -16.56643 -16.19239 -16.04623 -15.67262 -15.34612 -14.92285 -14.57926 -14.47464 -14.33852 -13.96797 -13.92225 -13.76377 -13.55584 -13.24824 -13.11945 -13.07763 -13.00370 -12.64104 -12.46740 -12.41037 -12.13331 -11.60707 -11.55103 -11.45435 -11.16698 -11.07995 -11.02101 -10.77881 -10.51002 -10.46153 -10.35190 -10.23481 -9.73211 -9.53225 -9.19636 -8.47918 -8.07581 -7.97079 -6.43065 -3.83881 1.99044 2.12983 2.16994 2.85253 3.15464 3.26203 3.33498 3.75581 3.89442 3.99129 4.12020 4.20420 4.30080 4.34729 4.51885 4.67269 4.68853 4.76758 4.81279 4.89320 4.91526 4.98835 5.08260 5.18551 5.20593 5.24261 5.29933 5.34349 5.39051 5.43098 5.50799 5.58071 5.64883 5.74074 5.77295 5.83175 5.95965 6.05248 6.08968 6.25820 6.89432 6.96313 7.19876 7.49891 7.54265 7.64224 7.67645 8.05396 8.60001 9.16837 9.53111 10.04508 10.74761 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.050761 B = 0.001269 C = 0.001248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.471789 B =22061.438003 C =22426.753186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.720 5.720 5 C 0.103 3.897 6 C 0.524 3.476 7 O -0.539 6.539 8 N -0.614 5.614 9 C 0.094 3.906 10 C -0.129 4.129 11 C -0.098 4.098 12 H 0.088 0.912 13 C -0.106 4.106 14 C 0.061 3.939 15 N -0.671 5.671 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.110 3.890 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.413 0.587 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.349 0.651 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.345 15.639 -1.197 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.377 5.377 5 C -0.025 4.025 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.348 5.348 9 C -0.028 4.028 10 C -0.167 4.167 11 C -0.118 4.118 12 H 0.107 0.893 13 C -0.145 4.145 14 C -0.069 4.069 15 N -0.303 5.303 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.012 4.012 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.168 0.832 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.693 14.902 -1.178 31.470 hybrid contribution 1.150 0.244 -0.266 1.206 sum -26.543 15.146 -1.443 30.594 Atomic orbital electron populations 1.21835 0.90957 1.04584 1.05542 1.20872 0.90855 0.82944 0.75253 1.90741 1.70762 1.31393 1.49800 1.45910 1.05904 1.10109 1.75733 1.21028 0.82508 0.94024 1.04898 1.20130 0.81147 0.91099 0.76423 1.90718 1.54241 1.46102 1.50565 1.48424 1.04702 1.09009 1.72642 1.22203 0.87157 0.91241 1.02243 1.22773 0.95518 0.95624 1.02783 1.22385 0.93523 0.94963 1.00885 0.89332 1.21474 0.93844 0.98572 1.00582 1.21943 0.92048 0.92668 1.00235 1.60058 1.08409 1.47958 1.13878 1.21664 0.89261 0.96974 1.00250 1.19830 0.83185 0.88308 0.86132 1.90523 1.76234 1.41646 1.38347 1.41870 1.08611 1.28033 1.41545 1.19763 0.90903 1.07132 1.25079 0.87864 1.25256 0.97754 0.98292 0.96610 1.69623 1.17895 1.34668 1.32160 0.85806 0.79680 0.80336 0.78561 1.19196 1.20771 1.20733 1.22378 0.92924 0.84150 1.01709 0.90290 0.88461 0.88461 0.74879 0.88293 0.88325 0.90835 0.90848 0.89449 0.90002 0.91475 0.90264 0.95493 0.91154 0.83214 0.93939 0.89644 0.77472 0.91929 0.90791 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.39 36.00 0.37 -0.25 16 2 C 0.51 3.90 7.94 -10.99 -0.09 3.81 16 3 O -0.55 -6.40 17.10 5.56 0.10 -6.31 16 4 N -0.72 -4.95 5.53 -61.47 -0.34 -5.29 16 5 C 0.10 0.70 5.35 -5.19 -0.03 0.67 16 6 C 0.52 4.46 7.92 -10.99 -0.09 4.38 16 7 O -0.54 -6.22 15.92 5.56 0.09 -6.14 16 8 N -0.61 -4.49 3.33 -170.47 -0.57 -5.06 16 9 C 0.09 0.47 6.49 -3.06 -0.02 0.45 16 10 C -0.13 -0.68 5.75 -24.90 -0.14 -0.82 16 11 C -0.10 -0.65 3.04 -88.46 -0.27 -0.92 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.11 -0.91 4.98 -26.73 -0.13 -1.04 16 14 C 0.06 0.64 5.56 -3.82 -0.02 0.62 16 15 N -0.67 -10.26 6.13 -115.05 -0.70 -10.96 16 16 C 0.05 0.88 6.17 -4.97 -0.03 0.84 16 17 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 18 O -0.58 -15.76 15.78 5.55 0.09 -15.68 16 19 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C 0.11 0.84 6.38 -2.49 -0.02 0.83 16 29 H 0.08 0.14 7.91 -51.93 -0.41 -0.27 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.41 2.54 7.27 -40.82 -0.30 2.24 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.44 7.96 -51.93 -0.41 0.03 16 39 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.26 7.63 -51.93 -0.40 -0.14 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 49 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 LS Contribution 410.34 15.07 6.18 6.18 Total: -1.00 -35.68 410.34 -8.31 -43.99 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.01 Total: 10.43 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.79 Total: 10.81 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.95 Total: -59.19 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: 0.27 Total: -28.12 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.68 -8.31 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672727767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.159 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds