Wall clock time and date at job start Sat Apr 11 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42903 * 109.46900 * 2 1 4 4 C 1.42895 * 113.99846 * 185.74182 * 3 2 1 5 5 O 1.42900 * 109.47204 * 90.02373 * 4 3 2 6 6 C 1.42901 * 114.00047 * 286.24780 * 5 4 3 7 7 C 1.52994 * 109.47240 * 186.66711 * 6 5 4 8 8 C 1.52998 * 109.47157 * 210.02280 * 4 3 2 9 9 H 1.09005 * 109.47018 * 59.99781 * 8 4 3 10 10 C 1.53001 * 109.47185 * 300.00204 * 8 4 3 11 11 N 1.46502 * 109.47235 * 179.97438 * 8 4 3 12 12 C 1.34780 * 119.99706 * 205.00306 * 11 8 4 13 13 O 1.21589 * 120.00248 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99848 * 180.02562 * 12 11 8 15 15 C 1.40190 * 120.00252 * 179.97438 * 14 12 11 16 16 C 1.40399 * 125.96825 * 359.97438 * 15 14 12 17 17 C 1.35251 * 107.86670 * 179.70103 * 16 15 14 18 18 N 1.34968 * 107.85373 * 0.26990 * 17 16 15 19 19 C 1.46505 * 125.97167 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47275 * 124.99688 * 19 18 17 21 21 H 1.08005 * 120.00080 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00440 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00598 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99476 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47272 * 90.00121 * 24 22 20 26 26 H 1.48505 * 109.47031 * 210.00070 * 24 22 20 27 27 H 1.48502 * 109.47349 * 329.99873 * 24 22 20 28 28 N 1.31208 * 125.97551 * 180.17369 * 15 14 12 29 29 H 1.08994 * 109.46679 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46852 * 299.99666 * 1 2 3 31 31 H 1.08996 * 109.47148 * 60.00261 * 1 2 3 32 32 H 1.08990 * 109.46939 * 239.99800 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99739 * 2 1 3 34 34 H 1.09001 * 109.47377 * 330.02304 * 4 3 2 35 35 H 1.08999 * 109.47083 * 306.66626 * 6 5 4 36 36 H 1.08999 * 109.47009 * 66.66360 * 6 5 4 37 37 H 1.08999 * 109.47012 * 299.99958 * 7 6 5 38 38 H 1.09009 * 109.47443 * 59.99998 * 7 6 5 39 39 H 1.08996 * 109.47414 * 179.97438 * 7 6 5 40 40 H 1.09005 * 109.46797 * 299.99713 * 10 8 4 41 41 H 1.08998 * 109.47090 * 60.00072 * 10 8 4 42 42 H 1.09000 * 109.47290 * 179.97438 * 10 8 4 43 43 H 0.96992 * 119.99809 * 24.99769 * 11 8 4 44 44 H 0.97003 * 119.99359 * 359.97438 * 14 12 11 45 45 H 1.08000 * 126.07311 * 359.97201 * 16 15 14 46 46 H 1.07999 * 126.07352 * 180.26196 * 17 16 15 47 47 H 1.09003 * 109.46475 * 244.99212 * 19 18 17 48 48 H 1.08992 * 109.47259 * 4.99099 * 19 18 17 49 49 H 0.97001 * 120.00445 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4247 1.4623 -0.1306 5 8 3.7704 1.5462 -1.5146 6 6 3.6542 0.3081 -2.2188 7 6 4.2031 0.4746 -3.6371 8 6 3.9028 2.7235 0.5917 9 1 3.6390 2.6596 1.6475 10 6 3.2323 3.9513 -0.0279 11 7 5.3569 2.8411 0.4583 12 6 6.0642 3.5300 1.3758 13 8 5.4954 4.0542 2.3139 14 7 7.4020 3.6387 1.2529 15 6 8.1377 4.3556 2.2068 16 6 7.6123 5.0076 3.3339 17 6 8.6421 5.5743 4.0030 18 7 9.7768 5.2995 3.3259 19 6 11.1277 5.7236 3.7023 20 6 12.0257 4.5169 3.7942 21 1 11.6297 3.5325 3.5928 22 6 13.3528 4.6695 4.1353 23 7 14.1364 3.6164 4.2160 24 14 14.0379 6.3723 4.4829 25 1 13.8881 6.6806 5.9279 26 1 15.4760 6.4119 4.1148 27 1 13.2942 7.3780 3.6825 28 7 9.4370 4.5378 2.2006 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9024 0.5877 0.3109 35 1 4.2232 -0.4614 -1.6970 36 1 2.6056 0.0146 -2.2670 37 1 3.6341 1.2441 -4.1589 38 1 5.2518 0.7681 -3.5888 39 1 4.1149 -0.4698 -4.1740 40 1 3.4960 4.0152 -1.0837 41 1 2.1504 3.8635 0.0717 42 1 3.5725 4.8498 0.4870 43 1 5.8106 2.4232 -0.2901 44 1 7.8557 3.2208 0.5042 45 1 6.5713 5.0457 3.6187 46 1 8.5693 6.1453 4.9168 47 1 11.5162 6.4092 2.9491 48 1 11.0946 6.2264 4.6687 49 1 15.0702 3.7239 4.4557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674717145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:57 Heat of formation + Delta-G solvation = -35.255922 kcal Electronic energy + Delta-G solvation = -29503.291112 eV Core-core repulsion = 25275.259699 eV Total energy + Delta-G solvation = -4228.031414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81946 -40.13871 -39.32137 -36.85213 -35.76487 -34.61368 -33.30286 -32.38041 -31.29984 -31.09695 -30.10059 -29.29193 -27.05345 -26.14551 -23.86998 -23.11999 -22.81337 -22.09294 -21.04131 -20.37770 -19.81571 -18.28527 -17.95900 -17.63483 -17.05623 -16.71674 -16.12112 -15.72796 -15.38032 -15.28146 -14.90774 -14.76994 -14.37483 -14.23465 -14.04398 -13.72379 -13.58484 -13.09038 -12.96895 -12.92753 -12.65122 -12.51273 -12.39194 -12.34172 -12.28184 -12.13114 -12.10434 -11.69329 -11.50849 -11.14095 -11.08906 -10.76050 -10.62362 -10.36980 -10.16664 -10.08098 -9.97536 -9.73333 -9.50235 -9.27754 -8.74879 -8.13338 -7.44107 -6.21777 -4.23753 2.21965 2.61742 2.93841 3.10417 3.16700 3.21860 3.24482 3.28093 3.66812 3.83263 4.22199 4.24610 4.29144 4.36074 4.47825 4.59449 4.70957 4.74657 4.79327 4.98790 5.06244 5.06489 5.15975 5.25218 5.30259 5.42303 5.44959 5.47384 5.66210 5.67702 5.70004 5.74553 5.84265 6.18849 6.22266 6.29329 6.37693 6.50342 6.58992 6.60909 6.63774 6.75865 7.00110 7.30336 7.47246 7.85688 7.92795 8.36240 8.59088 8.63058 8.88340 9.33444 10.90940 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.001916 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.986923 B =14613.559529 C =15213.786856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.382 6.382 4 C 0.241 3.759 5 O -0.382 6.382 6 C 0.048 3.952 7 C -0.152 4.152 8 C 0.184 3.816 9 H 0.109 0.891 10 C -0.156 4.156 11 N -0.736 5.736 12 C 0.717 3.283 13 O -0.566 6.566 14 N -0.642 5.642 15 C 0.280 3.720 16 C -0.282 4.282 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.232 3.768 20 C -0.533 4.533 21 H 0.085 0.915 22 C 0.075 3.925 23 N -0.888 5.888 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.300 5.300 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.401 0.599 44 H 0.408 0.592 45 H 0.163 0.837 46 H 0.168 0.832 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.829 -7.042 -12.273 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.302 6.302 4 C 0.144 3.856 5 O -0.303 6.303 6 C -0.028 4.028 7 C -0.209 4.209 8 C 0.078 3.922 9 H 0.127 0.873 10 C -0.214 4.214 11 N -0.394 5.394 12 C 0.417 3.583 13 O -0.441 6.441 14 N -0.292 5.292 15 C 0.025 3.975 16 C -0.313 4.313 17 C -0.099 4.099 18 N -0.103 5.103 19 C 0.113 3.887 20 C -0.571 4.571 21 H 0.103 0.897 22 C -0.128 4.128 23 N -0.526 5.526 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.188 1.188 28 N -0.131 5.131 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.235 0.765 44 H 0.243 0.757 45 H 0.180 0.820 46 H 0.186 0.814 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.029 -6.497 -12.010 28.512 hybrid contribution 0.402 -0.094 -0.057 0.417 sum -24.627 -6.591 -12.067 28.206 Atomic orbital electron populations 1.21740 0.93208 1.02398 1.03460 1.22838 0.96375 0.83491 1.00487 1.88019 1.22254 1.27063 1.92894 1.23391 0.81491 0.98132 0.82556 1.88065 1.86694 1.32988 1.22589 1.22725 0.99964 0.86206 0.93913 1.21755 1.02248 1.02575 0.94305 1.20546 0.78579 0.92744 1.00297 0.87338 1.22046 1.00839 0.97080 1.01432 1.44897 1.07077 1.58579 1.28833 1.15522 0.80576 0.79690 0.82543 1.90867 1.69283 1.51125 1.32862 1.41357 1.05111 1.55122 1.27647 1.18775 0.90120 0.97197 0.91400 1.21541 1.00997 1.10274 0.98503 1.22553 0.86148 1.02027 0.99188 1.48579 1.07484 1.37878 1.16328 1.20029 0.75594 0.97243 0.95805 1.21116 0.93821 0.93714 1.48479 0.89659 1.24835 0.96439 0.96934 0.94604 1.69871 1.06275 1.29184 1.47251 0.86905 0.79234 0.84674 0.79276 1.19730 1.20569 1.18848 1.77383 1.10148 1.17427 1.08141 0.90987 0.91499 0.91729 0.92793 0.92849 0.92047 0.93301 0.92705 0.91647 0.91578 0.91080 0.91748 0.91020 0.91783 0.76454 0.75736 0.81956 0.81446 0.94082 0.93347 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.04 0.28 6.25 37.16 0.23 0.51 16 3 O -0.38 -3.37 9.50 -59.04 -0.56 -3.93 16 4 C 0.24 2.05 2.60 37.16 0.10 2.15 16 5 O -0.38 -3.27 9.08 -59.04 -0.54 -3.80 16 6 C 0.05 0.30 5.78 37.15 0.21 0.52 16 7 C -0.15 -0.83 10.28 37.15 0.38 -0.45 16 8 C 0.18 1.88 2.71 -67.93 -0.18 1.70 16 9 H 0.11 1.24 7.58 -51.93 -0.39 0.84 16 10 C -0.16 -1.63 9.19 37.16 0.34 -1.29 16 11 N -0.74 -7.93 5.05 -58.67 -0.30 -8.22 16 12 C 0.72 10.63 8.50 -86.91 -0.74 9.89 16 13 O -0.57 -10.08 13.13 5.29 0.07 -10.02 16 14 N -0.64 -10.12 5.45 -15.51 -0.08 -10.20 16 15 C 0.28 5.65 8.11 -154.37 -1.25 4.40 16 16 C -0.28 -5.57 9.61 -39.83 -0.38 -5.95 16 17 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 18 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 19 C 0.23 5.55 5.33 -5.19 -0.03 5.52 16 20 C -0.53 -15.12 9.79 -34.44 -0.34 -15.46 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 24 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 28 N -0.30 -6.94 12.42 31.44 0.39 -6.55 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.28 5.03 -51.93 -0.26 0.02 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.46 7.63 -51.93 -0.40 0.07 16 35 H 0.05 0.26 8.00 -51.93 -0.42 -0.15 16 36 H 0.05 0.32 5.84 -51.93 -0.30 0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 41 H 0.07 0.71 7.68 -51.93 -0.40 0.32 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.40 3.47 8.22 -40.82 -0.34 3.14 16 44 H 0.41 5.27 8.84 -40.82 -0.36 4.91 16 45 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 46 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 47 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 48 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -34.64 402.48 -8.38 -43.02 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.73 Total: 7.63 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.57 Total: 3.95 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.55 Total: -58.46 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.03 Total: -17.75 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.64 -8.38 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674717145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.763 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds