Wall clock time and date at job start Sat Apr 11 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42903 * 109.46900 * 2 1 4 4 C 1.42895 * 113.99846 * 185.74182 * 3 2 1 5 5 O 1.42900 * 109.47204 * 90.02373 * 4 3 2 6 6 C 1.42901 * 114.00047 * 286.24780 * 5 4 3 7 7 C 1.52994 * 109.47240 * 186.66711 * 6 5 4 8 8 C 1.52998 * 109.47157 * 210.02280 * 4 3 2 9 9 H 1.09005 * 109.47018 * 59.99781 * 8 4 3 10 10 C 1.53001 * 109.47185 * 300.00204 * 8 4 3 11 11 N 1.46502 * 109.47235 * 179.97438 * 8 4 3 12 12 C 1.34780 * 119.99706 * 205.00306 * 11 8 4 13 13 O 1.21589 * 120.00248 * 359.97438 * 12 11 8 14 14 N 1.34779 * 119.99848 * 180.02562 * 12 11 8 15 15 C 1.40190 * 120.00252 * 179.97438 * 14 12 11 16 16 C 1.40399 * 125.96825 * 359.97438 * 15 14 12 17 17 C 1.35251 * 107.86670 * 179.70103 * 16 15 14 18 18 N 1.34968 * 107.85373 * 0.26990 * 17 16 15 19 19 C 1.46505 * 125.97167 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47275 * 124.99688 * 19 18 17 21 21 H 1.08005 * 120.00080 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00440 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00598 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99476 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47272 * 90.00121 * 24 22 20 26 26 H 1.48505 * 109.47031 * 210.00070 * 24 22 20 27 27 H 1.48502 * 109.47349 * 329.99873 * 24 22 20 28 28 N 1.31208 * 125.97551 * 180.17369 * 15 14 12 29 29 H 1.08994 * 109.46679 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46852 * 299.99666 * 1 2 3 31 31 H 1.08996 * 109.47148 * 60.00261 * 1 2 3 32 32 H 1.08990 * 109.46939 * 239.99800 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99739 * 2 1 3 34 34 H 1.09001 * 109.47377 * 330.02304 * 4 3 2 35 35 H 1.08999 * 109.47083 * 306.66626 * 6 5 4 36 36 H 1.08999 * 109.47009 * 66.66360 * 6 5 4 37 37 H 1.08999 * 109.47012 * 299.99958 * 7 6 5 38 38 H 1.09009 * 109.47443 * 59.99998 * 7 6 5 39 39 H 1.08996 * 109.47414 * 179.97438 * 7 6 5 40 40 H 1.09005 * 109.46797 * 299.99713 * 10 8 4 41 41 H 1.08998 * 109.47090 * 60.00072 * 10 8 4 42 42 H 1.09000 * 109.47290 * 179.97438 * 10 8 4 43 43 H 0.96992 * 119.99809 * 24.99769 * 11 8 4 44 44 H 0.97003 * 119.99359 * 359.97438 * 14 12 11 45 45 H 1.08000 * 126.07311 * 359.97201 * 16 15 14 46 46 H 1.07999 * 126.07352 * 180.26196 * 17 16 15 47 47 H 1.09003 * 109.46475 * 244.99212 * 19 18 17 48 48 H 1.08992 * 109.47259 * 4.99099 * 19 18 17 49 49 H 0.97001 * 120.00445 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4247 1.4623 -0.1306 5 8 3.7704 1.5462 -1.5146 6 6 3.6542 0.3081 -2.2188 7 6 4.2031 0.4746 -3.6371 8 6 3.9028 2.7235 0.5917 9 1 3.6390 2.6596 1.6475 10 6 3.2323 3.9513 -0.0279 11 7 5.3569 2.8411 0.4583 12 6 6.0642 3.5300 1.3758 13 8 5.4954 4.0542 2.3139 14 7 7.4020 3.6387 1.2529 15 6 8.1377 4.3556 2.2068 16 6 7.6123 5.0076 3.3339 17 6 8.6421 5.5743 4.0030 18 7 9.7768 5.2995 3.3259 19 6 11.1277 5.7236 3.7023 20 6 12.0257 4.5169 3.7942 21 1 11.6297 3.5325 3.5928 22 6 13.3528 4.6695 4.1353 23 7 14.1364 3.6164 4.2160 24 14 14.0379 6.3723 4.4829 25 1 13.8881 6.6806 5.9279 26 1 15.4760 6.4119 4.1148 27 1 13.2942 7.3780 3.6825 28 7 9.4370 4.5378 2.2006 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9024 0.5877 0.3109 35 1 4.2232 -0.4614 -1.6970 36 1 2.6056 0.0146 -2.2670 37 1 3.6341 1.2441 -4.1589 38 1 5.2518 0.7681 -3.5888 39 1 4.1149 -0.4698 -4.1740 40 1 3.4960 4.0152 -1.0837 41 1 2.1504 3.8635 0.0717 42 1 3.5725 4.8498 0.4870 43 1 5.8106 2.4232 -0.2901 44 1 7.8557 3.2208 0.5042 45 1 6.5713 5.0457 3.6187 46 1 8.5693 6.1453 4.9168 47 1 11.5162 6.4092 2.9491 48 1 11.0946 6.2264 4.6687 49 1 15.0702 3.7239 4.4557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674717145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:56 Heat of formation + Delta-G solvation = -59.781788 kcal Electronic energy + Delta-G solvation = -29504.354634 eV Core-core repulsion = 25275.259699 eV Total energy + Delta-G solvation = -4229.094935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25314 -41.19690 -40.27630 -37.44016 -36.80689 -36.00900 -35.20097 -33.39175 -32.69463 -31.57135 -31.18586 -30.78982 -28.86532 -26.92802 -24.79473 -24.30544 -23.50588 -23.27203 -22.20833 -21.69135 -21.28632 -19.43062 -19.08430 -18.67796 -18.24669 -18.17455 -17.29023 -16.74798 -16.65734 -16.20515 -16.05233 -15.82195 -15.67636 -15.29101 -14.98303 -14.79103 -14.74368 -14.48314 -14.34155 -13.88430 -13.79418 -13.55768 -13.45568 -13.29317 -12.97872 -12.88689 -12.85037 -12.76303 -12.52212 -12.39270 -12.27030 -12.07177 -11.83882 -11.82048 -11.60844 -11.46382 -11.13773 -10.93442 -10.85564 -10.68651 -10.31709 -9.72671 -9.02963 -8.36122 -6.46084 1.00100 1.09903 1.37789 1.40811 1.50550 1.69225 1.98749 2.30246 2.31705 2.44491 2.72168 2.96463 3.22749 3.60589 3.62514 3.94909 4.00284 4.15855 4.22081 4.23972 4.25419 4.30087 4.34614 4.38396 4.57370 4.62641 4.73996 4.76784 4.82222 4.84511 4.87182 4.95892 4.96597 4.99925 5.03647 5.15174 5.26080 5.26282 5.27353 5.34334 5.43947 5.78904 5.93528 6.03170 6.03832 6.06173 6.43544 6.58950 6.71068 7.12109 7.17035 7.38837 8.80904 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.001916 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.986923 B =14613.559529 C =15213.786856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 O -0.399 6.399 4 C 0.248 3.752 5 O -0.396 6.396 6 C 0.042 3.958 7 C -0.150 4.150 8 C 0.181 3.819 9 H 0.098 0.902 10 C -0.146 4.146 11 N -0.715 5.715 12 C 0.718 3.282 13 O -0.595 6.595 14 N -0.637 5.637 15 C 0.285 3.715 16 C -0.293 4.293 17 C 0.061 3.939 18 N -0.345 5.345 19 C 0.239 3.761 20 C -0.546 4.546 21 H 0.026 0.974 22 C 0.014 3.986 23 N -0.942 5.942 24 Si 0.956 3.044 25 H -0.253 1.253 26 H -0.281 1.281 27 H -0.240 1.240 28 N -0.350 5.350 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.414 0.586 44 H 0.420 0.580 45 H 0.169 0.831 46 H 0.211 0.789 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.895 -6.055 -12.366 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 O -0.319 6.319 4 C 0.151 3.849 5 O -0.317 6.317 6 C -0.033 4.033 7 C -0.207 4.207 8 C 0.076 3.924 9 H 0.116 0.884 10 C -0.205 4.205 11 N -0.373 5.373 12 C 0.417 3.583 13 O -0.472 6.472 14 N -0.288 5.288 15 C 0.029 3.971 16 C -0.324 4.324 17 C -0.087 4.087 18 N -0.127 5.127 19 C 0.120 3.880 20 C -0.584 4.584 21 H 0.045 0.955 22 C -0.185 4.185 23 N -0.581 5.581 24 Si 0.776 3.224 25 H -0.178 1.178 26 H -0.207 1.207 27 H -0.163 1.163 28 N -0.180 5.180 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.251 0.749 44 H 0.257 0.743 45 H 0.186 0.814 46 H 0.227 0.773 47 H 0.063 0.937 48 H 0.100 0.900 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.150 -5.550 -12.156 29.366 hybrid contribution 0.573 -0.568 -0.103 0.814 sum -25.576 -6.118 -12.259 29.015 Atomic orbital electron populations 1.21758 0.92538 1.03478 1.02868 1.23051 0.96968 0.82463 1.01419 1.87995 1.22149 1.28777 1.93012 1.23176 0.81748 0.97263 0.82680 1.88039 1.86771 1.34405 1.22509 1.22901 1.00654 0.85653 0.94122 1.21768 1.01706 1.03269 0.93997 1.20589 0.77778 0.93882 1.00123 0.88434 1.21938 1.01112 0.96346 1.01074 1.44726 1.07276 1.57170 1.28089 1.15620 0.80152 0.79720 0.82767 1.90839 1.69684 1.52435 1.34276 1.41367 1.05393 1.54733 1.27348 1.19101 0.89655 0.96361 0.91966 1.21734 1.01373 1.10627 0.98644 1.23245 0.84763 1.00982 0.99734 1.48484 1.07818 1.39252 1.17180 1.19880 0.75552 0.95208 0.97398 1.21235 0.95219 0.93172 1.48752 0.95518 1.25922 0.96463 1.02268 0.93865 1.70047 1.06904 1.32470 1.48694 0.85615 0.78115 0.78363 0.80271 1.17757 1.20665 1.16271 1.77300 1.11726 1.19447 1.09556 0.89087 0.92220 0.92171 0.91584 0.92163 0.90763 0.92085 0.92139 0.92391 0.92052 0.89371 0.91713 0.90508 0.93553 0.74929 0.74320 0.81425 0.77271 0.93714 0.90044 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.99 0.74 -0.59 16 2 C 0.04 0.40 6.25 71.99 0.45 0.84 16 3 O -0.40 -6.55 9.50 -126.21 -1.20 -7.75 16 4 C 0.25 3.90 2.60 71.98 0.19 4.09 16 5 O -0.40 -6.18 9.08 -126.21 -1.15 -7.33 16 6 C 0.04 0.46 5.78 71.98 0.42 0.87 16 7 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 8 C 0.18 3.59 2.71 44.99 0.12 3.72 16 9 H 0.10 2.20 7.58 -2.38 -0.02 2.18 16 10 C -0.15 -3.01 9.19 71.98 0.66 -2.35 16 11 N -0.71 -14.83 5.05 -457.79 -2.31 -17.14 16 12 C 0.72 21.00 8.50 179.05 1.52 22.52 16 13 O -0.59 -21.08 13.13 -4.00 -0.05 -21.13 16 14 N -0.64 -19.99 5.45 -321.23 -1.75 -21.74 16 15 C 0.29 11.55 8.11 133.31 1.08 12.63 16 16 C -0.29 -11.37 9.61 22.11 0.21 -11.15 16 17 C 0.06 2.27 11.44 83.52 0.96 3.23 16 18 N -0.35 -15.65 3.67 -351.83 -1.29 -16.94 16 19 C 0.24 11.17 5.33 85.63 0.46 11.62 16 20 C -0.55 -31.65 9.79 25.60 0.25 -31.40 16 21 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 22 C 0.01 0.77 5.47 84.65 0.46 1.23 16 23 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 24 Si 0.96 40.87 27.47 68.60 1.88 42.76 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 28 N -0.35 -16.43 12.42 -54.44 -0.68 -17.11 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.55 5.03 -2.39 -0.01 0.53 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.98 7.63 -2.39 -0.02 0.96 16 35 H 0.06 0.51 8.00 -2.39 -0.02 0.49 16 36 H 0.06 0.58 5.84 -2.39 -0.01 0.57 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 1.32 7.68 -2.38 -0.02 1.30 16 41 H 0.08 1.50 7.68 -2.39 -0.02 1.48 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.41 6.65 8.22 -92.71 -0.76 5.89 16 44 H 0.42 10.81 8.84 -92.71 -0.82 9.99 16 45 H 0.17 6.36 5.91 -2.91 -0.02 6.34 16 46 H 0.21 5.76 8.06 -2.91 -0.02 5.73 16 47 H 0.05 2.05 7.20 -2.39 -0.02 2.03 16 48 H 0.08 3.26 7.50 -2.39 -0.02 3.24 16 49 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.13 402.48 1.35 -76.78 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.66 Total: 32.92 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 8.26 Total: 14.57 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -5.73 Total: -130.82 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.40 Total: -36.21 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.76 kcal Total: -78.13 1.35 -76.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674717145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.997 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds