Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00295 * 2 1 4 4 N 1.34775 * 119.99507 * 180.02562 * 2 1 3 5 5 C 1.46510 * 119.99507 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46573 * 179.97438 * 5 4 2 7 7 O 1.21272 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99494 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99792 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.29215 * 35.67157 * 9 8 6 11 11 C 1.54385 * 110.32573 * 273.54875 * 9 8 6 12 12 N 1.48556 * 104.59520 * 217.25290 * 11 9 8 13 13 C 1.46904 * 111.00162 * 159.03833 * 12 11 9 14 14 C 1.50696 * 109.46878 * 74.57980 * 13 12 11 15 15 O 1.21290 * 120.00223 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99437 * 179.97438 * 14 13 12 17 17 C 1.37106 * 119.99512 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99886 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99564 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00280 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99620 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46733 * 90.00501 * 21 19 17 23 23 H 1.48502 * 109.46760 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47379 * 330.00141 * 21 19 17 25 25 C 1.48566 * 104.22488 * 39.48059 * 12 11 9 26 26 C 1.54264 * 110.32501 * 157.91125 * 9 8 6 27 27 C 1.53002 * 110.31992 * 359.97438 * 26 9 8 28 28 C 1.52996 * 110.32259 * 237.79282 * 26 9 8 29 29 H 1.08995 * 109.47206 * 240.00148 * 1 2 3 30 30 H 1.09003 * 109.46797 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47633 * 119.99423 * 1 2 3 32 32 H 0.96992 * 120.00508 * 359.97438 * 4 2 1 33 33 H 1.08994 * 109.47010 * 60.00071 * 5 4 2 34 34 H 1.08999 * 109.46693 * 299.99163 * 5 4 2 35 35 H 0.96994 * 120.00480 * 0.02562 * 8 6 5 36 36 H 1.08997 * 110.41336 * 98.47281 * 11 9 8 37 37 H 1.09001 * 110.50872 * 336.07767 * 11 9 8 38 38 H 1.08997 * 109.46932 * 194.58376 * 13 12 11 39 39 H 1.09002 * 109.46802 * 314.57726 * 13 12 11 40 40 H 0.96995 * 120.00178 * 0.02562 * 16 14 13 41 41 H 0.97007 * 120.00308 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.41049 * 79.29303 * 25 12 11 43 43 H 1.08999 * 110.41330 * 201.74251 * 25 12 11 44 44 H 1.08999 * 109.46725 * 177.08930 * 27 26 9 45 45 H 1.08997 * 109.47007 * 297.09276 * 27 26 9 46 46 H 1.08994 * 109.47252 * 57.09324 * 27 26 9 47 47 H 1.08996 * 109.47253 * 302.90773 * 28 26 9 48 48 H 1.09002 * 109.47394 * 62.90450 * 28 26 9 49 49 H 1.08997 * 109.47057 * 182.90784 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1481 -2.5881 -0.0001 7 8 3.3600 -3.5099 -0.0001 8 7 5.4732 -2.8344 -0.0001 9 6 5.9615 -4.2156 0.0003 10 1 5.3043 -4.8491 -0.5956 11 6 6.0559 -4.7506 1.4454 12 7 7.2785 -5.5944 1.4531 13 6 7.7869 -5.7722 2.8198 14 6 6.9035 -6.7414 3.5623 15 8 5.9450 -7.2358 3.0074 16 7 7.1792 -7.0596 4.8426 17 6 6.3752 -7.9410 5.5183 18 1 5.5212 -8.3805 5.0244 19 6 6.6591 -8.2686 6.8384 20 7 7.6979 -7.7333 7.4394 21 14 5.5640 -9.4700 7.7588 22 1 6.0740 -10.8514 7.5668 23 1 5.5703 -9.1367 9.2059 24 1 4.1775 -9.3769 7.2353 25 6 8.2483 -4.8396 0.6183 26 6 7.4038 -4.2743 -0.5438 27 6 7.8872 -2.8722 -0.9197 28 6 7.4770 -5.2051 -1.7558 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6958 -2.0072 -0.0005 33 1 4.0088 -0.6540 0.8905 34 1 4.0095 -0.6529 -0.8895 35 1 6.1035 -2.0972 0.0003 36 1 5.1784 -5.3504 1.6868 37 1 6.1582 -3.9267 2.1517 38 1 8.8035 -6.1634 2.7812 39 1 7.7865 -4.8118 3.3354 40 1 7.9460 -6.6645 5.2862 41 1 7.8963 -7.9624 8.3609 42 1 8.6945 -4.0285 1.1936 43 1 9.0215 -5.5066 0.2369 44 1 8.9237 -2.9226 -1.2533 45 1 7.2657 -2.4768 -1.7232 46 1 7.8167 -2.2183 -0.0506 47 1 7.1174 -6.1952 -1.4758 48 1 6.8560 -4.8066 -2.5581 49 1 8.5097 -5.2767 -2.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675427041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = -97.610776 kcal Electronic energy + Delta-G solvation = -30060.023492 eV Core-core repulsion = 25829.288169 eV Total energy + Delta-G solvation = -4230.735323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.81661 -39.88289 -38.87255 -37.86751 -34.97179 -34.67692 -33.88128 -33.38881 -31.21946 -30.88701 -29.42538 -27.89171 -27.53992 -26.64356 -25.07171 -23.71873 -21.69264 -20.90316 -20.62776 -19.61445 -18.98172 -17.99452 -17.82281 -16.90906 -16.50817 -16.25471 -15.97219 -15.90645 -15.23287 -15.13067 -14.72433 -14.51427 -14.20874 -14.11220 -13.96764 -13.74910 -13.51767 -13.26432 -13.19392 -12.90607 -12.80386 -12.76315 -12.37462 -12.34432 -12.10579 -11.85036 -11.69105 -11.48859 -11.23547 -11.13439 -10.99786 -10.88940 -10.60550 -10.37886 -10.30411 -10.20249 -10.19783 -9.53997 -9.47507 -9.26044 -8.53133 -8.03268 -7.93137 -6.39799 -3.80365 2.25341 2.34272 2.51034 3.15942 3.19261 3.27584 3.33800 3.92317 4.01583 4.18893 4.27239 4.40115 4.47381 4.54597 4.69066 4.90196 4.92376 5.01697 5.02986 5.06582 5.08441 5.17551 5.25697 5.28207 5.37362 5.43801 5.49930 5.53469 5.65277 5.68988 5.78111 5.82122 5.85531 5.91213 5.95196 6.04589 6.15038 6.26833 6.28973 6.37305 7.04221 7.13700 7.15550 7.18598 7.57206 7.85294 7.89228 8.08382 8.64245 9.20604 9.56693 10.09025 10.78125 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.002625 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.742429 B =10662.094242 C =12839.944594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.506 3.494 7 O -0.529 6.529 8 N -0.720 5.720 9 C 0.149 3.851 10 H 0.103 0.897 11 C 0.031 3.969 12 N -0.479 5.479 13 C 0.035 3.965 14 C 0.445 3.555 15 O -0.574 6.574 16 N -0.567 5.567 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.037 3.963 26 C -0.074 4.074 27 C -0.146 4.146 28 C -0.134 4.134 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.414 0.586 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.403 0.597 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 15.194 -17.295 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.375 5.375 5 C -0.029 4.029 6 C 0.291 3.709 7 O -0.405 6.405 8 N -0.374 5.374 9 C 0.044 3.956 10 H 0.121 0.879 11 C -0.098 4.098 12 N -0.203 5.203 13 C -0.096 4.096 14 C 0.230 3.770 15 O -0.457 6.457 16 N -0.204 5.204 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.092 4.092 26 C -0.075 4.075 27 C -0.203 4.203 28 C -0.191 4.191 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.241 0.759 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.988 14.359 -17.669 22.963 hybrid contribution 0.438 0.373 1.387 1.501 sum -2.549 14.732 -16.282 22.105 Atomic orbital electron populations 1.21902 0.91041 1.05630 1.04682 1.20854 0.90847 0.82954 0.75261 1.90727 1.70906 1.31434 1.49806 1.45800 1.05915 1.10138 1.75690 1.21055 0.82667 0.94390 1.04799 1.20524 0.83088 0.90989 0.76274 1.90747 1.55066 1.45764 1.48895 1.46277 1.06640 1.09448 1.75084 1.21890 0.94789 0.81590 0.97336 0.87880 1.23540 0.96155 0.95582 0.94486 1.65102 1.02978 1.42010 1.10221 1.22064 0.99448 0.98915 0.89211 1.19696 0.87929 0.86445 0.82934 1.90526 1.30938 1.56560 1.67692 1.41860 1.27680 1.40786 1.10076 1.19694 1.08877 1.19861 0.94176 0.87950 1.25245 0.97224 0.98638 0.96890 1.69612 1.27339 1.44165 1.13416 0.85870 0.80222 0.80059 0.78225 1.20405 1.20973 1.19423 1.23314 0.95536 0.96577 0.93732 1.21522 0.93757 0.95980 0.96230 1.21889 1.01984 0.95349 1.01117 1.21816 1.01780 0.99822 0.95680 0.89061 0.88797 0.89173 0.74754 0.88345 0.88412 0.75907 0.87984 0.94106 0.89201 0.93237 0.77578 0.91938 0.93777 0.89652 0.91543 0.91854 0.92517 0.91122 0.92786 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.32 36.01 0.37 -0.63 16 2 C 0.51 4.97 7.94 -10.99 -0.09 4.88 16 3 O -0.55 -7.42 17.09 5.56 0.09 -7.32 16 4 N -0.72 -6.56 5.53 -61.47 -0.34 -6.90 16 5 C 0.10 0.86 6.15 -5.19 -0.03 0.83 16 6 C 0.51 5.48 7.89 -10.98 -0.09 5.40 16 7 O -0.53 -7.75 15.36 5.56 0.09 -7.66 16 8 N -0.72 -6.80 4.64 -52.46 -0.24 -7.04 16 9 C 0.15 1.79 2.99 -66.54 -0.20 1.59 16 10 H 0.10 1.45 7.22 -51.93 -0.37 1.07 16 11 C 0.03 0.50 5.63 -2.18 -0.01 0.49 16 12 N -0.48 -7.73 4.98 -231.40 -1.15 -8.88 16 13 C 0.04 0.63 5.32 -4.98 -0.03 0.60 16 14 C 0.44 10.60 7.63 -10.99 -0.08 10.51 16 15 O -0.57 -15.76 14.80 5.55 0.08 -15.67 16 16 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 21 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.04 0.42 5.55 -2.18 -0.01 0.41 16 26 C -0.07 -0.71 1.03 -153.13 -0.16 -0.87 16 27 C -0.15 -0.97 7.10 37.16 0.26 -0.70 16 28 C -0.13 -1.24 8.24 37.16 0.31 -0.93 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 3.64 7.44 -40.82 -0.30 3.33 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.40 2.70 5.75 -40.82 -0.23 2.47 16 36 H 0.10 2.06 7.24 -51.93 -0.38 1.68 16 37 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 38 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 39 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 40 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.04 0.46 7.72 -51.93 -0.40 0.06 16 43 H 0.09 0.93 7.86 -51.93 -0.41 0.53 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.37 7.88 -51.93 -0.41 -0.04 16 46 H 0.06 0.33 6.82 -51.93 -0.35 -0.02 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -35.91 400.62 -7.51 -43.41 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.72 Total: 12.78 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 0.00 Total: 13.55 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -1.07 Total: -61.39 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: 0.26 Total: -30.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.91 -7.51 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675427041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.198 kcal (2) G-P(sol) polarization free energy of solvation -35.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds