Wall clock time and date at job start Sat Apr 11 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00295 * 2 1 4 4 N 1.34775 * 119.99507 * 180.02562 * 2 1 3 5 5 C 1.46510 * 119.99507 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46573 * 179.97438 * 5 4 2 7 7 O 1.21272 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99494 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99792 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.29215 * 35.67157 * 9 8 6 11 11 C 1.54385 * 110.32573 * 273.54875 * 9 8 6 12 12 N 1.48556 * 104.59520 * 217.25290 * 11 9 8 13 13 C 1.46904 * 111.00162 * 159.03833 * 12 11 9 14 14 C 1.50696 * 109.46878 * 74.57980 * 13 12 11 15 15 O 1.21290 * 120.00223 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99437 * 179.97438 * 14 13 12 17 17 C 1.37106 * 119.99512 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99886 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99564 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00280 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99620 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46733 * 90.00501 * 21 19 17 23 23 H 1.48502 * 109.46760 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47379 * 330.00141 * 21 19 17 25 25 C 1.48566 * 104.22488 * 39.48059 * 12 11 9 26 26 C 1.54264 * 110.32501 * 157.91125 * 9 8 6 27 27 C 1.53002 * 110.31992 * 359.97438 * 26 9 8 28 28 C 1.52996 * 110.32259 * 237.79282 * 26 9 8 29 29 H 1.08995 * 109.47206 * 240.00148 * 1 2 3 30 30 H 1.09003 * 109.46797 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47633 * 119.99423 * 1 2 3 32 32 H 0.96992 * 120.00508 * 359.97438 * 4 2 1 33 33 H 1.08994 * 109.47010 * 60.00071 * 5 4 2 34 34 H 1.08999 * 109.46693 * 299.99163 * 5 4 2 35 35 H 0.96994 * 120.00480 * 0.02562 * 8 6 5 36 36 H 1.08997 * 110.41336 * 98.47281 * 11 9 8 37 37 H 1.09001 * 110.50872 * 336.07767 * 11 9 8 38 38 H 1.08997 * 109.46932 * 194.58376 * 13 12 11 39 39 H 1.09002 * 109.46802 * 314.57726 * 13 12 11 40 40 H 0.96995 * 120.00178 * 0.02562 * 16 14 13 41 41 H 0.97007 * 120.00308 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.41049 * 79.29303 * 25 12 11 43 43 H 1.08999 * 110.41330 * 201.74251 * 25 12 11 44 44 H 1.08999 * 109.46725 * 177.08930 * 27 26 9 45 45 H 1.08997 * 109.47007 * 297.09276 * 27 26 9 46 46 H 1.08994 * 109.47252 * 57.09324 * 27 26 9 47 47 H 1.08996 * 109.47253 * 302.90773 * 28 26 9 48 48 H 1.09002 * 109.47394 * 62.90450 * 28 26 9 49 49 H 1.08997 * 109.47057 * 182.90784 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1481 -2.5881 -0.0001 7 8 3.3600 -3.5099 -0.0001 8 7 5.4732 -2.8344 -0.0001 9 6 5.9615 -4.2156 0.0003 10 1 5.3043 -4.8491 -0.5956 11 6 6.0559 -4.7506 1.4454 12 7 7.2785 -5.5944 1.4531 13 6 7.7869 -5.7722 2.8198 14 6 6.9035 -6.7414 3.5623 15 8 5.9450 -7.2358 3.0074 16 7 7.1792 -7.0596 4.8426 17 6 6.3752 -7.9410 5.5183 18 1 5.5212 -8.3805 5.0244 19 6 6.6591 -8.2686 6.8384 20 7 7.6979 -7.7333 7.4394 21 14 5.5640 -9.4700 7.7588 22 1 6.0740 -10.8514 7.5668 23 1 5.5703 -9.1367 9.2059 24 1 4.1775 -9.3769 7.2353 25 6 8.2483 -4.8396 0.6183 26 6 7.4038 -4.2743 -0.5438 27 6 7.8872 -2.8722 -0.9197 28 6 7.4770 -5.2051 -1.7558 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6958 -2.0072 -0.0005 33 1 4.0088 -0.6540 0.8905 34 1 4.0095 -0.6529 -0.8895 35 1 6.1035 -2.0972 0.0003 36 1 5.1784 -5.3504 1.6868 37 1 6.1582 -3.9267 2.1517 38 1 8.8035 -6.1634 2.7812 39 1 7.7865 -4.8118 3.3354 40 1 7.9460 -6.6645 5.2862 41 1 7.8963 -7.9624 8.3609 42 1 8.6945 -4.0285 1.1936 43 1 9.0215 -5.5066 0.2369 44 1 8.9237 -2.9226 -1.2533 45 1 7.2657 -2.4768 -1.7232 46 1 7.8167 -2.2183 -0.0506 47 1 7.1174 -6.1952 -1.4758 48 1 6.8560 -4.8066 -2.5581 49 1 8.5097 -5.2767 -2.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675427041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:00 Heat of formation + Delta-G solvation = -128.268581 kcal Electronic energy + Delta-G solvation = -30061.352914 eV Core-core repulsion = 25829.288169 eV Total energy + Delta-G solvation = -4232.064745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.76882 -40.80095 -40.11039 -39.41364 -36.25965 -35.70773 -35.50860 -34.39191 -33.27872 -31.57307 -30.49872 -28.95529 -28.36159 -27.48802 -26.73998 -25.00675 -22.88068 -21.64675 -21.57737 -21.07956 -20.25921 -19.82665 -18.79952 -17.82346 -17.77248 -17.23373 -17.05026 -16.89532 -16.53320 -16.34564 -16.17266 -15.81315 -15.63082 -15.30742 -15.01330 -14.98278 -14.39460 -14.30436 -14.15505 -14.03602 -13.86473 -13.52735 -13.44790 -13.33001 -13.08138 -13.00420 -12.96282 -12.81019 -12.61331 -12.44063 -12.37654 -12.14651 -11.87839 -11.77245 -11.57641 -11.48690 -11.18179 -11.08929 -10.35721 -10.33875 -10.18380 -10.01949 -9.38970 -8.48128 -5.96631 1.35972 1.39197 1.39406 1.52163 1.57699 1.71364 2.04717 2.27013 2.40384 2.84061 3.17890 3.29263 3.45638 3.56973 3.60288 3.88512 3.92102 4.14382 4.20145 4.25129 4.28056 4.30364 4.35043 4.38602 4.50388 4.53864 4.65088 4.68017 4.72333 4.77471 4.85302 4.97933 5.00340 5.05365 5.06198 5.17250 5.23987 5.30516 5.35334 5.39094 5.45192 5.80160 5.91066 6.07023 6.35771 6.43420 6.59856 7.05481 7.12157 7.12867 7.55336 8.12406 8.69379 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.002625 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.742429 B =10662.094242 C =12839.944594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.510 3.490 3 O -0.593 6.593 4 N -0.720 5.720 5 C 0.102 3.898 6 C 0.507 3.493 7 O -0.572 6.572 8 N -0.703 5.703 9 C 0.159 3.841 10 H 0.077 0.923 11 C 0.036 3.964 12 N -0.505 5.505 13 C 0.049 3.951 14 C 0.439 3.561 15 O -0.618 6.618 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.075 0.925 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.275 1.275 25 C 0.037 3.963 26 C -0.064 4.064 27 C -0.143 4.143 28 C -0.132 4.132 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.420 0.580 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.062 0.938 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 16.852 -18.009 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.474 6.474 4 N -0.375 5.375 5 C -0.025 4.025 6 C 0.293 3.707 7 O -0.451 6.451 8 N -0.359 5.359 9 C 0.052 3.948 10 H 0.095 0.905 11 C -0.093 4.093 12 N -0.229 5.229 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.503 6.503 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.093 0.907 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.200 1.200 25 C -0.090 4.090 26 C -0.065 4.065 27 C -0.200 4.200 28 C -0.189 4.189 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.585 16.046 -18.389 24.457 hybrid contribution 0.016 -0.179 1.579 1.589 sum -1.569 15.866 -16.810 23.168 Atomic orbital electron populations 1.21935 0.88106 1.06326 1.06302 1.21509 0.92278 0.82195 0.74071 1.90705 1.71999 1.32702 1.51962 1.45899 1.06215 1.10225 1.75146 1.21115 0.82652 0.92625 1.06097 1.20944 0.83085 0.91464 0.75174 1.90738 1.56220 1.47273 1.50884 1.46105 1.06641 1.08977 1.74174 1.21584 0.96344 0.82316 0.94511 0.90497 1.23332 0.94269 0.94651 0.97089 1.64978 1.04323 1.43949 1.09698 1.21920 0.98741 0.97943 0.89662 1.20860 0.87804 0.86288 0.82407 1.90501 1.33053 1.58237 1.68535 1.41925 1.27704 1.40878 1.10826 1.19615 1.09418 1.21835 0.95309 0.90705 1.26007 0.98406 0.99819 0.96975 1.69664 1.27964 1.44575 1.13919 0.84960 0.78042 0.78125 0.77407 1.19524 1.19345 1.20025 1.23467 0.94917 0.97047 0.93560 1.21513 0.91232 0.98224 0.95542 1.21899 1.03126 0.92878 1.02096 1.21804 1.03104 0.98236 0.95771 0.87667 0.88585 0.87158 0.74561 0.87526 0.86419 0.73823 0.93677 0.93801 0.86695 0.91143 0.76996 0.91280 0.91570 0.88598 0.89795 0.90672 0.91314 0.93960 0.91919 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.32 71.24 0.74 -0.97 16 2 C 0.51 9.45 7.94 87.66 0.70 10.15 16 3 O -0.59 -15.62 17.09 -3.04 -0.05 -15.68 16 4 N -0.72 -12.67 5.53 -466.77 -2.58 -15.25 16 5 C 0.10 1.66 6.15 85.63 0.53 2.19 16 6 C 0.51 10.83 7.89 87.66 0.69 11.52 16 7 O -0.57 -17.44 15.36 -3.01 -0.05 -17.48 16 8 N -0.70 -12.44 4.64 -438.28 -2.03 -14.48 16 9 C 0.16 3.80 2.99 45.89 0.14 3.94 16 10 H 0.08 2.28 7.22 -2.39 -0.02 2.26 16 11 C 0.04 1.18 5.63 86.45 0.49 1.67 16 12 N -0.51 -16.22 4.98 -886.03 -4.41 -20.63 16 13 C 0.05 1.70 5.32 85.55 0.46 2.15 16 14 C 0.44 21.62 7.63 87.66 0.67 22.29 16 15 O -0.62 -35.87 14.80 -3.06 -0.05 -35.91 16 16 N -0.58 -30.25 5.29 -306.98 -1.62 -31.88 16 17 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 18 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 20 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 21 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.04 0.76 5.55 86.45 0.48 1.24 16 26 C -0.06 -1.09 1.03 -51.29 -0.05 -1.15 16 27 C -0.14 -1.30 7.10 71.98 0.51 -0.79 16 28 C -0.13 -2.22 8.24 71.98 0.59 -1.63 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.42 7.24 7.44 -92.71 -0.69 6.55 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 4.46 5.75 -92.71 -0.53 3.93 16 36 H 0.04 1.98 7.24 -2.39 -0.02 1.96 16 37 H 0.04 1.36 7.67 -2.39 -0.02 1.35 16 38 H 0.12 3.42 8.08 -2.39 -0.02 3.40 16 39 H 0.07 2.16 7.77 -2.39 -0.02 2.15 16 40 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 41 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 42 H 0.07 1.11 7.72 -2.39 -0.02 1.09 16 43 H 0.10 1.81 7.86 -2.39 -0.02 1.79 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.56 7.88 -2.39 -0.02 0.54 16 46 H 0.07 0.49 6.82 -2.39 -0.02 0.48 16 47 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -82.96 400.62 -2.23 -85.19 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.96 Total: 38.30 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 7.21 Total: 31.85 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -10.36 Total: -132.16 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -0.14 Total: -69.07 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -82.96 -2.23 -85.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675427041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.079 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds