Wall clock time and date at job start Sat Apr 11 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00175 * 2 1 4 4 N 1.34776 * 120.00044 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00120 * 3.49301 * 4 2 1 6 6 C 1.46502 * 120.00267 * 183.49590 * 4 2 1 7 7 C 1.50705 * 109.46814 * 89.99870 * 6 4 2 8 8 O 1.21277 * 120.00148 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99391 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99682 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.84624 * 334.66127 * 10 9 7 12 12 C 1.53776 * 113.61898 * 105.85602 * 10 9 7 13 13 C 1.54055 * 86.98410 * 89.16108 * 12 10 9 14 14 H 1.09000 * 113.61215 * 270.88677 * 13 12 10 15 15 C 1.53001 * 113.69661 * 139.99070 * 13 12 10 16 16 N 1.46893 * 109.47238 * 87.46644 * 15 13 12 17 17 C 1.46898 * 111.00451 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47669 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99360 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00166 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99951 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00305 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00146 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99576 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46954 * 60.00429 * 25 23 21 27 27 H 1.48497 * 109.46856 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46904 * 300.00261 * 25 23 21 29 29 C 1.53776 * 113.61589 * 203.46773 * 10 9 7 30 30 H 1.08999 * 109.47041 * 175.61553 * 1 2 3 31 31 H 1.09003 * 109.46931 * 295.61509 * 1 2 3 32 32 H 1.09000 * 109.46850 * 55.61384 * 1 2 3 33 33 H 1.09003 * 109.46860 * 84.30374 * 5 4 2 34 34 H 1.08997 * 109.47574 * 204.30158 * 5 4 2 35 35 H 1.09007 * 109.47174 * 324.30893 * 5 4 2 36 36 H 1.08996 * 109.47289 * 209.99784 * 6 4 2 37 37 H 1.08994 * 109.47070 * 329.99890 * 6 4 2 38 38 H 0.96999 * 120.00306 * 359.97438 * 9 7 6 39 39 H 1.09000 * 113.62029 * 203.66326 * 12 10 9 40 40 H 1.09002 * 113.61683 * 334.57321 * 12 10 9 41 41 H 1.08997 * 109.47146 * 207.47479 * 15 13 12 42 42 H 1.09003 * 109.47000 * 327.46993 * 15 13 12 43 43 H 1.00904 * 111.00019 * 56.04761 * 16 15 13 44 44 H 1.08999 * 109.46925 * 300.00528 * 17 16 15 45 45 H 1.09010 * 109.46586 * 59.99978 * 17 16 15 46 46 H 0.97005 * 119.99999 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00161 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.61276 * 25.43247 * 29 10 9 49 49 H 1.08997 * 113.61840 * 156.24555 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4505 -2.4347 -0.0784 6 6 3.6439 -1.1685 0.0768 7 6 4.0704 -1.2128 1.5216 8 8 3.2347 -1.2411 2.4000 9 7 5.3807 -1.2211 1.8373 10 6 5.7954 -1.2648 3.2417 11 1 5.0439 -0.8569 3.9178 12 6 6.3408 -2.6339 3.6808 13 6 7.7272 -2.1346 3.2315 14 1 7.9468 -2.3400 2.1838 15 6 8.8633 -2.5487 4.1689 16 7 9.3674 -3.8705 3.7733 17 6 10.4622 -4.3014 4.6528 18 6 10.9529 -5.6579 4.2168 19 8 10.4411 -6.2111 3.2663 20 7 11.9602 -6.2564 4.8828 21 6 12.4069 -7.4902 4.4857 22 1 11.9518 -7.9825 3.6389 23 6 13.4458 -8.1069 5.1720 24 7 13.9998 -7.5077 6.2020 25 14 14.0548 -9.7878 4.6306 26 1 14.5461 -9.7091 3.2314 27 1 15.1610 -10.2237 5.5203 28 1 12.9412 -10.7670 4.7099 29 6 7.2086 -0.7092 3.4843 30 1 -0.3633 -1.0247 -0.0786 31 1 -0.3633 0.4443 0.9267 32 1 -0.3633 0.5804 -0.8481 33 1 1.2350 -2.6664 -1.1215 34 1 2.0573 -3.2309 0.3527 35 1 0.5154 -2.3499 0.4755 36 1 4.0345 -2.0424 -0.4443 37 1 4.0331 -0.2634 -0.3893 38 1 6.0490 -1.1988 1.1347 39 1 6.2667 -2.8097 4.7540 40 1 5.9614 -3.4658 3.0874 41 1 9.6701 -1.8185 4.1067 42 1 8.4917 -2.5932 5.1927 43 1 9.6583 -3.8722 2.8071 44 1 11.2801 -3.5833 4.5935 45 1 10.1021 -4.3578 5.6802 46 1 12.3697 -5.8137 5.6427 47 1 14.7248 -7.9384 6.6814 48 1 7.5293 0.0119 2.7324 49 1 7.3709 -0.3583 4.5034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675716887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:11 Heat of formation + Delta-G solvation = -78.111176 kcal Electronic energy + Delta-G solvation = -28480.493682 eV Core-core repulsion = 24250.603925 eV Total energy + Delta-G solvation = -4229.889757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.81618 -39.93120 -38.57331 -38.11482 -35.83803 -35.21789 -33.88914 -33.32416 -31.24120 -31.13235 -28.88037 -28.11605 -26.56303 -25.88916 -25.46737 -23.75044 -22.14145 -21.49904 -19.75827 -19.55150 -19.05001 -17.88448 -17.75883 -17.51652 -16.78163 -16.25475 -15.91929 -15.70919 -15.47595 -15.34329 -14.75701 -14.71072 -14.31265 -14.06147 -13.94341 -13.75309 -13.68729 -13.57760 -13.28882 -13.21852 -12.88228 -12.61016 -12.51130 -12.49109 -12.25817 -12.06224 -11.75212 -11.54870 -11.48673 -11.02669 -10.98924 -10.60975 -10.44609 -10.42811 -10.34033 -10.25948 -10.20979 -9.50261 -9.27145 -9.13294 -8.44761 -8.03187 -7.95542 -6.41847 -3.82762 2.11536 2.31638 2.44708 2.99688 3.19744 3.25412 3.29757 3.91059 4.05496 4.16945 4.24546 4.29979 4.41777 4.56814 4.60765 4.62267 4.71273 4.79618 4.86414 4.87376 4.97563 5.08553 5.17188 5.21378 5.25751 5.33718 5.42114 5.44822 5.53130 5.55250 5.59634 5.70146 5.81916 5.83370 5.98184 5.98379 6.02437 6.07050 6.27091 6.42583 6.85630 7.17697 7.23937 7.54633 7.68010 7.72087 7.92570 8.06034 8.61319 9.17600 9.54325 10.05937 10.75826 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.001496 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.398863 B =18706.789671 C =19490.595830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.519 3.481 3 O -0.546 6.546 4 N -0.602 5.602 5 C 0.079 3.921 6 C 0.094 3.906 7 C 0.500 3.500 8 O -0.531 6.531 9 N -0.710 5.710 10 C 0.116 3.884 11 H 0.099 0.901 12 C -0.133 4.133 13 C -0.104 4.104 14 H 0.090 0.910 15 C 0.068 3.932 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.140 4.140 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.402 0.598 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.347 0.653 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.072 0.928 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.752 15.705 -10.433 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.309 3.691 3 O -0.423 6.423 4 N -0.335 5.335 5 C -0.063 4.063 6 C -0.033 4.033 7 C 0.284 3.716 8 O -0.407 6.407 9 N -0.362 5.362 10 C 0.011 3.989 11 H 0.117 0.883 12 C -0.172 4.172 13 C -0.123 4.123 14 H 0.108 0.892 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.179 4.179 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.166 0.834 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.733 15.450 -9.961 29.235 hybrid contribution 1.841 -0.179 -0.209 1.861 sum -20.892 15.272 -10.170 27.805 Atomic orbital electron populations 1.21965 0.91340 1.04768 1.05362 1.20855 0.90860 0.82815 0.74616 1.90715 1.70688 1.31142 1.49718 1.47469 1.05402 1.07196 1.73478 1.21897 0.97803 0.84935 1.01710 1.21309 0.82172 1.05918 0.93915 1.21182 0.82536 0.75820 0.92022 1.90700 1.51372 1.48640 1.49960 1.45646 1.07074 1.75261 1.08199 1.21895 0.96341 0.97988 0.82681 0.88326 1.23407 0.95117 0.96580 1.02047 1.22604 0.94810 0.94875 0.99977 0.89222 1.21967 0.95708 0.89439 0.99008 1.60066 1.36829 1.25806 1.07238 1.21671 0.92657 0.95843 0.98066 1.19828 0.83403 0.87775 0.86380 1.90515 1.59478 1.66530 1.30314 1.41859 1.30713 1.18065 1.29399 1.19659 1.15165 0.93968 1.14245 0.87990 1.25259 0.96736 1.00014 0.95880 1.69604 1.25630 1.39258 1.19836 0.85914 0.78253 0.81622 0.78402 1.19934 1.20971 1.19891 1.23349 0.94660 0.96871 1.03016 0.89889 0.88542 0.88728 0.92044 0.90600 0.90436 0.87159 0.86726 0.76405 0.89095 0.90963 0.95508 0.90969 0.83372 0.94002 0.89687 0.77460 0.91825 0.90964 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 10.00 36.00 0.36 -0.59 16 2 C 0.52 4.98 7.78 -10.99 -0.09 4.89 16 3 O -0.55 -7.47 16.66 5.56 0.09 -7.38 16 4 N -0.60 -4.69 2.36 -182.95 -0.43 -5.12 16 5 C 0.08 0.36 9.93 59.85 0.59 0.96 16 6 C 0.09 0.68 5.89 -5.19 -0.03 0.64 16 7 C 0.50 5.05 7.90 -10.98 -0.09 4.96 16 8 O -0.53 -7.51 16.05 5.56 0.09 -7.42 16 9 N -0.71 -5.86 5.26 -53.02 -0.28 -6.14 16 10 C 0.12 1.08 4.29 -67.12 -0.29 0.79 16 11 H 0.10 1.08 7.50 -51.93 -0.39 0.69 16 12 C -0.13 -1.36 7.45 -25.78 -0.19 -1.56 16 13 C -0.10 -0.99 3.79 -89.66 -0.34 -1.33 16 14 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 15 C 0.07 0.79 5.53 -3.83 -0.02 0.77 16 16 N -0.67 -10.50 6.13 -115.06 -0.70 -11.21 16 17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 19 O -0.58 -15.86 15.78 5.54 0.09 -15.78 16 20 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.14 -1.10 7.38 -25.92 -0.19 -1.29 16 30 H 0.08 0.25 5.51 -51.93 -0.29 -0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.36 8.03 -51.93 -0.42 -0.06 16 35 H 0.08 0.29 6.19 -51.92 -0.32 -0.03 16 36 H 0.11 0.45 8.07 -51.93 -0.42 0.03 16 37 H 0.11 0.83 7.38 -51.93 -0.38 0.44 16 38 H 0.40 2.27 8.70 -40.82 -0.36 1.91 16 39 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 43 H 0.35 5.60 8.42 -39.29 -0.33 5.27 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 410.86 15.07 6.19 6.19 Total: -1.00 -37.47 410.86 -7.73 -45.21 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.78 Total: 12.44 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -0.64 Total: 11.40 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.75 Total: -60.65 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: 0.27 Total: -30.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.47 -7.73 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675716887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.906 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds