Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00175 * 2 1 4 4 N 1.34776 * 120.00044 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00120 * 3.49301 * 4 2 1 6 6 C 1.46502 * 120.00267 * 183.49590 * 4 2 1 7 7 C 1.50705 * 109.46814 * 89.99870 * 6 4 2 8 8 O 1.21277 * 120.00148 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99391 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99682 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.84624 * 334.66127 * 10 9 7 12 12 C 1.53776 * 113.61898 * 105.85602 * 10 9 7 13 13 C 1.54055 * 86.98410 * 89.16108 * 12 10 9 14 14 H 1.09000 * 113.61215 * 270.88677 * 13 12 10 15 15 C 1.53001 * 113.69661 * 139.99070 * 13 12 10 16 16 N 1.46893 * 109.47238 * 87.46644 * 15 13 12 17 17 C 1.46898 * 111.00451 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47669 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99360 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00166 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99951 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00305 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00146 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99576 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46954 * 60.00429 * 25 23 21 27 27 H 1.48497 * 109.46856 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46904 * 300.00261 * 25 23 21 29 29 C 1.53776 * 113.61589 * 203.46773 * 10 9 7 30 30 H 1.08999 * 109.47041 * 175.61553 * 1 2 3 31 31 H 1.09003 * 109.46931 * 295.61509 * 1 2 3 32 32 H 1.09000 * 109.46850 * 55.61384 * 1 2 3 33 33 H 1.09003 * 109.46860 * 84.30374 * 5 4 2 34 34 H 1.08997 * 109.47574 * 204.30158 * 5 4 2 35 35 H 1.09007 * 109.47174 * 324.30893 * 5 4 2 36 36 H 1.08996 * 109.47289 * 209.99784 * 6 4 2 37 37 H 1.08994 * 109.47070 * 329.99890 * 6 4 2 38 38 H 0.96999 * 120.00306 * 359.97438 * 9 7 6 39 39 H 1.09000 * 113.62029 * 203.66326 * 12 10 9 40 40 H 1.09002 * 113.61683 * 334.57321 * 12 10 9 41 41 H 1.08997 * 109.47146 * 207.47479 * 15 13 12 42 42 H 1.09003 * 109.47000 * 327.46993 * 15 13 12 43 43 H 1.00904 * 111.00019 * 56.04761 * 16 15 13 44 44 H 1.08999 * 109.46925 * 300.00528 * 17 16 15 45 45 H 1.09010 * 109.46586 * 59.99978 * 17 16 15 46 46 H 0.97005 * 119.99999 * 359.97438 * 20 18 17 47 47 H 0.97003 * 120.00161 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.61276 * 25.43247 * 29 10 9 49 49 H 1.08997 * 113.61840 * 156.24555 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4505 -2.4347 -0.0784 6 6 3.6439 -1.1685 0.0768 7 6 4.0704 -1.2128 1.5216 8 8 3.2347 -1.2411 2.4000 9 7 5.3807 -1.2211 1.8373 10 6 5.7954 -1.2648 3.2417 11 1 5.0439 -0.8569 3.9178 12 6 6.3408 -2.6339 3.6808 13 6 7.7272 -2.1346 3.2315 14 1 7.9468 -2.3400 2.1838 15 6 8.8633 -2.5487 4.1689 16 7 9.3674 -3.8705 3.7733 17 6 10.4622 -4.3014 4.6528 18 6 10.9529 -5.6579 4.2168 19 8 10.4411 -6.2111 3.2663 20 7 11.9602 -6.2564 4.8828 21 6 12.4069 -7.4902 4.4857 22 1 11.9518 -7.9825 3.6389 23 6 13.4458 -8.1069 5.1720 24 7 13.9998 -7.5077 6.2020 25 14 14.0548 -9.7878 4.6306 26 1 14.5461 -9.7091 3.2314 27 1 15.1610 -10.2237 5.5203 28 1 12.9412 -10.7670 4.7099 29 6 7.2086 -0.7092 3.4843 30 1 -0.3633 -1.0247 -0.0786 31 1 -0.3633 0.4443 0.9267 32 1 -0.3633 0.5804 -0.8481 33 1 1.2350 -2.6664 -1.1215 34 1 2.0573 -3.2309 0.3527 35 1 0.5154 -2.3499 0.4755 36 1 4.0345 -2.0424 -0.4443 37 1 4.0331 -0.2634 -0.3893 38 1 6.0490 -1.1988 1.1347 39 1 6.2667 -2.8097 4.7540 40 1 5.9614 -3.4658 3.0874 41 1 9.6701 -1.8185 4.1067 42 1 8.4917 -2.5932 5.1927 43 1 9.6583 -3.8722 2.8071 44 1 11.2801 -3.5833 4.5935 45 1 10.1021 -4.3578 5.6802 46 1 12.3697 -5.8137 5.6427 47 1 14.7248 -7.9384 6.6814 48 1 7.5293 0.0119 2.7324 49 1 7.3709 -0.3583 4.5034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675716887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -108.167706 kcal Electronic energy + Delta-G solvation = -28481.797031 eV Core-core repulsion = 24250.603925 eV Total energy + Delta-G solvation = -4231.193106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55471 -40.67855 -40.11423 -39.26776 -36.63278 -36.40709 -35.76525 -34.25436 -33.25491 -31.70601 -29.90703 -28.83595 -27.39756 -26.85117 -26.59872 -25.22641 -23.07044 -22.25466 -21.15006 -20.39315 -20.13830 -19.82704 -18.51160 -18.14875 -17.80226 -17.42044 -16.97245 -16.75423 -16.45371 -16.32356 -16.16368 -15.93010 -15.55381 -15.38470 -15.15252 -14.79861 -14.49705 -14.39789 -14.14018 -14.01178 -13.70527 -13.57668 -13.49519 -13.28294 -13.16807 -13.04920 -13.03778 -12.87592 -12.59614 -12.51881 -12.43275 -12.12554 -11.82943 -11.50117 -11.42637 -11.24088 -11.15895 -10.99112 -10.33329 -10.05005 -10.01545 -9.75966 -9.25215 -8.46382 -5.95391 1.40175 1.42089 1.43704 1.53069 1.54488 1.88867 2.05750 2.29521 2.34413 2.93549 3.20949 3.48052 3.57521 3.67468 3.74785 3.81286 3.91281 4.02692 4.17493 4.23366 4.32474 4.34981 4.42602 4.46320 4.53747 4.55491 4.60397 4.65477 4.74032 4.74921 4.85379 4.86240 4.87875 4.90101 5.09381 5.12794 5.20552 5.28702 5.31188 5.40678 5.65982 5.90939 6.13398 6.28060 6.46504 6.49649 6.60411 7.06164 7.12582 7.20402 7.56516 8.11774 8.70723 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.001496 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.398863 B =18706.789671 C =19490.595830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.598 6.598 4 N -0.604 5.604 5 C 0.073 3.927 6 C 0.093 3.907 7 C 0.494 3.506 8 O -0.578 6.578 9 N -0.699 5.699 10 C 0.116 3.884 11 H 0.079 0.921 12 C -0.136 4.136 13 C -0.098 4.098 14 H 0.095 0.905 15 C 0.070 3.930 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.337 4.337 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.122 4.122 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.416 0.584 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.343 0.657 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.088 0.912 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 15.842 -11.008 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.480 6.480 4 N -0.335 5.335 5 C -0.068 4.068 6 C -0.034 4.034 7 C 0.281 3.719 8 O -0.457 6.457 9 N -0.352 5.352 10 C 0.010 3.990 11 H 0.097 0.903 12 C -0.175 4.175 13 C -0.116 4.116 14 H 0.113 0.887 15 C -0.059 4.059 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.161 4.161 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.253 0.747 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.162 0.838 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.643 15.580 -10.538 29.436 hybrid contribution 1.786 -0.232 -0.020 1.801 sum -20.857 15.348 -10.558 27.965 Atomic orbital electron populations 1.22003 0.88437 1.06747 1.05716 1.21628 0.92502 0.82526 0.73692 1.90677 1.71964 1.32968 1.52360 1.47684 1.05829 1.07880 1.72143 1.22130 0.97802 0.83327 1.03586 1.21461 0.82355 1.07460 0.92103 1.21756 0.82546 0.74766 0.92857 1.90674 1.52612 1.50984 1.51442 1.45589 1.07071 1.74196 1.08312 1.21815 0.96739 0.97511 0.82927 0.90256 1.23404 0.96063 0.96444 1.01576 1.22558 0.93371 0.95892 0.99804 0.88708 1.22057 0.96543 0.87699 0.99569 1.60076 1.36044 1.28572 1.06774 1.21528 0.94018 0.92381 0.98849 1.20921 0.82022 0.89463 0.85157 1.90482 1.60416 1.68163 1.31951 1.41936 1.31496 1.17744 1.29878 1.19650 1.16628 0.95629 1.14733 0.90298 1.26039 0.96216 1.03295 0.95628 1.69666 1.25745 1.40506 1.20169 0.84986 0.77900 0.77172 0.78257 1.19604 1.19481 1.19803 1.23270 0.92595 0.96044 1.04144 0.87236 0.88771 0.87545 0.89402 0.90782 0.89554 0.83648 0.86778 0.74685 0.89534 0.92706 0.93879 0.90631 0.83795 0.91618 0.88132 0.76988 0.91291 0.89346 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.00 71.24 0.71 -0.96 16 2 C 0.51 9.62 7.78 87.66 0.68 10.30 16 3 O -0.60 -16.92 16.66 -3.04 -0.05 -16.97 16 4 N -0.60 -8.88 2.36 -851.12 -2.01 -10.89 16 5 C 0.07 0.54 9.93 127.77 1.27 1.81 16 6 C 0.09 1.26 5.89 85.63 0.50 1.76 16 7 C 0.49 9.92 7.90 87.66 0.69 10.61 16 8 O -0.58 -16.76 16.05 -3.02 -0.05 -16.81 16 9 N -0.70 -10.99 5.26 -440.04 -2.32 -13.31 16 10 C 0.12 2.08 4.29 45.51 0.20 2.27 16 11 H 0.08 1.77 7.50 -2.39 -0.02 1.76 16 12 C -0.14 -2.73 7.45 31.21 0.23 -2.49 16 13 C -0.10 -1.67 3.79 -10.17 -0.04 -1.71 16 14 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 15 C 0.07 1.46 5.53 86.31 0.48 1.93 16 16 N -0.68 -20.51 6.13 -517.94 -3.17 -23.68 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.71 7.82 87.66 0.69 21.39 16 19 O -0.62 -34.43 15.78 -3.08 -0.05 -34.48 16 20 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 21 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 C -0.12 -1.64 7.38 31.12 0.23 -1.41 16 30 H 0.11 0.44 5.51 -2.39 -0.01 0.42 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.07 0.60 8.03 -2.39 -0.02 0.58 16 35 H 0.09 0.48 6.19 -2.38 -0.01 0.47 16 36 H 0.15 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.11 1.59 7.38 -2.39 -0.02 1.58 16 38 H 0.42 4.04 8.70 -92.71 -0.81 3.23 16 39 H 0.09 1.80 7.91 -2.39 -0.02 1.78 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 1.55 7.85 -2.39 -0.02 1.53 16 43 H 0.34 10.72 8.42 -89.69 -0.76 9.97 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 46 H 0.40 19.28 7.90 -92.70 -0.73 18.55 16 47 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 48 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -83.69 410.86 -0.81 -84.50 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -1.30 Total: 39.47 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 7.45 Total: 27.70 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -8.84 Total: -128.16 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -0.15 Total: -68.26 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -83.69 -0.81 -84.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675716887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.669 kcal (2) G-P(sol) polarization free energy of solvation -83.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds