Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47389 * 125.37892 * 2 1 4 4 C 1.54098 * 103.70405 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.55003 * 241.44384 * 4 3 2 6 6 C 1.50703 * 110.55195 * 118.77605 * 4 3 2 7 7 O 1.21276 * 119.99935 * 262.00458 * 6 4 3 8 8 N 1.34779 * 119.99530 * 82.00092 * 6 4 3 9 9 C 1.46922 * 120.63245 * 359.97438 * 8 6 4 10 10 C 1.53195 * 108.77250 * 126.37038 * 9 8 6 11 11 C 1.53039 * 109.31277 * 54.63975 * 10 9 8 12 12 C 1.53045 * 109.53392 * 298.63080 * 11 10 9 13 13 H 1.09002 * 109.49912 * 301.41188 * 12 11 10 14 14 N 1.46505 * 109.49551 * 181.35007 * 12 11 10 15 15 C 1.36930 * 119.99966 * 299.99965 * 14 12 11 16 16 H 1.08000 * 120.00378 * 322.45396 * 15 14 12 17 17 C 1.38821 * 119.99995 * 142.45179 * 15 14 12 18 18 N 1.31618 * 119.99988 * 157.48587 * 17 15 14 19 19 Si 1.86798 * 119.99677 * 337.49271 * 17 15 14 20 20 H 1.48492 * 109.47520 * 95.35700 * 19 17 15 21 21 H 1.48502 * 109.46724 * 215.35575 * 19 17 15 22 22 H 1.48502 * 109.47140 * 335.35158 * 19 17 15 23 23 C 1.46496 * 119.99712 * 120.00144 * 14 12 11 24 24 C 1.53004 * 109.47179 * 86.26797 * 23 14 12 25 25 O 1.42890 * 109.47099 * 66.23987 * 24 23 14 26 26 C 1.46928 * 120.62753 * 179.72518 * 8 6 4 27 27 N 1.47059 * 103.99170 * 0.10878 * 4 3 2 28 28 C 1.33947 * 125.41020 * 180.09983 * 2 1 3 29 29 O 1.21581 * 123.04347 * 359.97176 * 28 2 1 30 30 H 1.08997 * 109.46848 * 179.88307 * 1 2 3 31 31 H 1.09002 * 109.46939 * 299.87777 * 1 2 3 32 32 H 1.08994 * 109.47329 * 59.87753 * 1 2 3 33 33 H 1.09005 * 110.58951 * 61.44371 * 3 2 1 34 34 H 1.09000 * 110.65761 * 298.52991 * 3 2 1 35 35 H 1.08998 * 109.59122 * 246.15411 * 9 8 6 36 36 H 1.09003 * 109.58900 * 6.58467 * 9 8 6 37 37 H 1.09001 * 109.49509 * 174.58517 * 10 9 8 38 38 H 1.08997 * 109.49766 * 294.64773 * 10 9 8 39 39 H 1.09001 * 109.46429 * 58.65248 * 11 10 9 40 40 H 1.09005 * 109.45829 * 178.61627 * 11 10 9 41 41 H 0.96996 * 119.99645 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47300 * 206.26686 * 23 14 12 43 43 H 1.09000 * 109.47285 * 326.26541 * 23 14 12 44 44 H 1.09000 * 109.46904 * 186.24611 * 24 23 14 45 45 H 1.09003 * 109.46448 * 306.23815 * 24 23 14 46 46 H 0.96708 * 114.00466 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.58834 * 353.41847 * 26 8 6 48 48 H 1.09000 * 109.58733 * 113.84195 * 26 8 6 49 49 H 0.97002 * 125.41217 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3184 1.2017 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2858 0.9449 0.8973 6 6 4.4934 1.0681 -1.2360 7 8 4.5738 0.3226 -2.1892 8 7 5.0684 2.2862 -1.2827 9 6 4.9790 3.2006 -0.1362 10 6 6.3929 3.6449 0.2515 11 6 7.0904 4.2397 -0.9739 12 6 7.2016 3.1742 -2.0669 13 1 7.7598 2.3190 -1.6859 14 7 7.8981 3.7350 -3.2274 15 6 7.3790 4.8226 -3.8777 16 1 6.3106 4.9175 -4.0032 17 6 8.2262 5.8031 -4.3756 18 7 7.8214 6.5896 -5.3502 19 14 9.9407 6.0061 -3.6625 20 1 10.9147 5.2535 -4.4931 21 1 10.3059 7.4455 -3.6536 22 1 9.9646 5.4809 -2.2736 23 6 9.1498 3.1322 -3.6921 24 6 8.8368 1.9843 -4.6540 25 8 8.2353 2.5072 -5.8399 26 6 5.8012 2.7227 -2.4790 27 7 3.5538 -0.8248 -0.0017 28 6 2.2411 -1.0917 -0.0019 29 8 1.7946 -2.2226 -0.0034 30 1 -0.3633 -1.0277 -0.0021 31 1 -0.3633 0.5119 0.8911 32 1 -0.3634 0.5157 -0.8888 33 1 2.1426 1.7967 0.8963 34 1 2.1438 1.7973 -0.8961 35 1 4.3842 4.0722 -0.4094 36 1 4.5136 2.6873 0.7053 37 1 6.3349 4.3973 1.0380 38 1 6.9584 2.7854 0.6113 39 1 6.5110 5.0841 -1.3474 40 1 8.0880 4.5791 -0.6948 41 1 8.4135 7.2745 -5.6983 42 1 9.7465 3.8852 -4.2070 43 1 9.7075 2.7486 -2.8377 44 1 9.7598 1.4654 -4.9130 45 1 8.1498 1.2864 -4.1753 46 1 8.0091 1.8337 -6.4961 47 1 5.8782 1.8941 -3.1830 48 1 5.2746 3.5546 -2.9468 49 1 4.2621 -1.4875 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689205539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = -50.096746 kcal Electronic energy + Delta-G solvation = -31691.372436 eV Core-core repulsion = 27462.697476 eV Total energy + Delta-G solvation = -4228.674960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59251 -39.77234 -37.78904 -36.43088 -36.32052 -34.81179 -34.31682 -32.39450 -31.56616 -30.53348 -29.41830 -27.75472 -27.29602 -25.39664 -24.26651 -23.51447 -22.40136 -21.38260 -20.77803 -19.92938 -19.09702 -17.99597 -17.56072 -16.77314 -16.71001 -16.33915 -16.17081 -15.42032 -15.27824 -15.11206 -14.64538 -14.41310 -14.24972 -14.18608 -13.83474 -13.71576 -13.56699 -13.35709 -13.07847 -12.90033 -12.68727 -12.56341 -12.51654 -12.35777 -12.22882 -11.87500 -11.43723 -11.14133 -10.92429 -10.80625 -10.50227 -10.44438 -10.40713 -10.22076 -10.10794 -9.78574 -9.55042 -9.38302 -9.14041 -8.85514 -8.64197 -8.38055 -6.84655 -5.93046 -3.34894 2.20719 2.53460 2.74137 3.08511 3.32206 3.45586 3.48355 3.61658 3.98678 4.19564 4.43748 4.54900 4.63653 4.73468 4.94810 4.98650 5.04480 5.07343 5.09806 5.20088 5.25345 5.42762 5.43162 5.50719 5.58507 5.65278 5.76378 5.82616 5.92522 5.97197 6.07177 6.09303 6.15494 6.31591 6.35125 6.38796 6.44337 6.58702 6.70313 6.83533 6.86122 6.94313 7.19807 7.43847 8.05380 8.11080 8.37798 8.39302 8.47734 8.96985 9.75389 10.11109 11.22570 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.003046 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.050620 B = 9189.176285 C = 9682.229709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.638 5.638 3 C 0.107 3.893 4 C 0.102 3.898 5 H 0.116 0.884 6 C 0.499 3.501 7 O -0.526 6.526 8 N -0.599 5.599 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.128 4.128 12 C 0.170 3.830 13 H 0.051 0.949 14 N -0.589 5.589 15 C -0.253 4.253 16 H 0.076 0.924 17 C 0.044 3.956 18 N -0.896 5.896 19 Si 0.872 3.128 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.133 3.867 24 C 0.061 3.939 25 O -0.537 6.537 26 C 0.103 3.897 27 N -0.715 5.715 28 C 0.706 3.294 29 O -0.585 6.585 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.023 0.977 45 H 0.032 0.968 46 H 0.355 0.645 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -7.816 15.066 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.008 4.008 5 H 0.133 0.867 6 C 0.284 3.716 7 O -0.402 6.402 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.172 4.172 11 C -0.168 4.168 12 C 0.061 3.939 13 H 0.070 0.930 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.094 0.906 17 C -0.156 4.156 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.007 3.993 24 C -0.020 4.020 25 O -0.339 6.339 26 C -0.020 4.020 27 N -0.376 5.376 28 C 0.406 3.594 29 O -0.463 6.463 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.198 0.802 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -8.115 -8.045 14.750 18.658 hybrid contribution 1.504 -0.348 -0.064 1.545 sum -6.611 -8.393 14.686 18.161 Atomic orbital electron populations 1.21427 0.75372 1.04060 1.01443 1.47068 1.06463 1.05571 1.78638 1.22338 0.86177 0.89024 1.04157 1.21908 0.97197 0.83203 0.98489 0.86665 1.20585 0.80134 0.81952 0.88974 1.90747 1.59766 1.52664 1.37013 1.48278 1.52745 1.14746 1.17551 1.21874 0.98474 0.93845 0.87806 1.21952 0.95217 1.00889 0.99132 1.21980 1.00790 1.00086 0.93926 1.20519 0.91501 0.94154 0.87681 0.93037 1.44004 1.24598 1.32796 1.29660 1.18478 0.93184 0.95925 1.30538 0.90616 1.25339 0.97257 0.96163 0.96864 1.69880 1.37099 1.22388 1.24297 0.87018 0.86484 0.75781 0.80409 1.21677 1.23189 1.19515 1.21364 0.89386 0.94402 0.94164 1.22889 0.94420 0.96960 0.87730 1.86894 1.82846 1.35785 1.28334 1.22269 0.93547 1.00698 0.85456 1.44840 1.06931 1.06249 1.79565 1.15790 0.81702 0.84614 0.77270 1.90953 1.75850 1.20901 1.58629 0.89510 0.91965 0.91962 0.88719 0.89370 0.90538 0.90556 0.90935 0.92089 0.90453 0.92077 0.92952 0.91537 0.93233 0.95901 0.94941 0.80152 0.89655 0.90235 0.72412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.92 11.22 59.85 0.67 1.59 16 2 N -0.64 -6.69 3.36 -186.47 -0.63 -7.31 16 3 C 0.11 0.85 7.07 -2.98 -0.02 0.83 16 4 C 0.10 0.96 3.16 -68.20 -0.22 0.74 16 5 H 0.12 0.71 6.64 -51.93 -0.34 0.36 16 6 C 0.50 6.63 6.81 -10.98 -0.07 6.55 16 7 O -0.53 -9.47 15.99 5.56 0.09 -9.38 16 8 N -0.60 -7.68 2.98 -173.00 -0.52 -8.20 16 9 C 0.10 0.94 6.25 -3.71 -0.02 0.91 16 10 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 11 C -0.13 -1.99 5.11 -26.69 -0.14 -2.13 16 12 C 0.17 2.98 2.77 -68.01 -0.19 2.79 16 13 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 14 N -0.59 -12.84 1.99 -165.75 -0.33 -13.17 16 15 C -0.25 -6.57 8.42 -15.06 -0.13 -6.70 16 16 H 0.08 2.15 6.89 -52.49 -0.36 1.78 16 17 C 0.04 1.23 5.28 -17.43 -0.09 1.14 16 18 N -0.90 -26.87 13.97 55.49 0.78 -26.09 16 19 Si 0.87 21.51 25.06 -169.99 -4.26 17.25 16 20 H -0.29 -7.13 6.67 56.52 0.38 -6.75 16 21 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.13 2.77 4.72 -4.04 -0.02 2.76 16 24 C 0.06 1.14 7.38 37.16 0.27 1.42 16 25 O -0.54 -11.40 13.36 -35.23 -0.47 -11.87 16 26 C 0.10 1.76 5.75 -3.91 -0.02 1.74 16 27 N -0.71 -8.26 5.62 -59.33 -0.33 -8.59 16 28 C 0.71 9.67 8.60 -88.40 -0.76 8.91 16 29 O -0.59 -10.20 17.29 5.29 0.09 -10.10 16 30 H 0.09 0.77 7.52 -51.93 -0.39 0.38 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.74 7.72 -51.93 -0.40 0.34 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.42 5.42 -51.93 -0.28 0.14 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.07 1.58 3.47 -51.93 -0.18 1.40 16 43 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.36 5.64 9.12 45.56 0.42 6.05 16 47 H 0.09 1.67 7.01 -51.93 -0.36 1.31 16 48 H 0.08 1.52 6.79 -51.93 -0.35 1.17 16 49 H 0.43 4.67 8.96 -40.82 -0.37 4.30 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -37.59 383.81 -7.51 -45.09 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.81 Total: 7.58 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: -0.90 Total: 19.01 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.03 Total: -63.36 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.29 Total: -31.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.26 Total: 17.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.59 -7.51 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.003 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds