Wall clock time and date at job start Sat Apr 11 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47389 * 125.37892 * 2 1 4 4 C 1.54098 * 103.70405 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.55003 * 241.44384 * 4 3 2 6 6 C 1.50703 * 110.55195 * 118.77605 * 4 3 2 7 7 O 1.21276 * 119.99935 * 262.00458 * 6 4 3 8 8 N 1.34779 * 119.99530 * 82.00092 * 6 4 3 9 9 C 1.46922 * 120.63245 * 359.97438 * 8 6 4 10 10 C 1.53195 * 108.77250 * 126.37038 * 9 8 6 11 11 C 1.53039 * 109.31277 * 54.63975 * 10 9 8 12 12 C 1.53045 * 109.53392 * 298.63080 * 11 10 9 13 13 H 1.09002 * 109.49912 * 301.41188 * 12 11 10 14 14 N 1.46505 * 109.49551 * 181.35007 * 12 11 10 15 15 C 1.36930 * 119.99966 * 299.99965 * 14 12 11 16 16 H 1.08000 * 120.00378 * 322.45396 * 15 14 12 17 17 C 1.38821 * 119.99995 * 142.45179 * 15 14 12 18 18 N 1.31618 * 119.99988 * 157.48587 * 17 15 14 19 19 Si 1.86798 * 119.99677 * 337.49271 * 17 15 14 20 20 H 1.48492 * 109.47520 * 95.35700 * 19 17 15 21 21 H 1.48502 * 109.46724 * 215.35575 * 19 17 15 22 22 H 1.48502 * 109.47140 * 335.35158 * 19 17 15 23 23 C 1.46496 * 119.99712 * 120.00144 * 14 12 11 24 24 C 1.53004 * 109.47179 * 86.26797 * 23 14 12 25 25 O 1.42890 * 109.47099 * 66.23987 * 24 23 14 26 26 C 1.46928 * 120.62753 * 179.72518 * 8 6 4 27 27 N 1.47059 * 103.99170 * 0.10878 * 4 3 2 28 28 C 1.33947 * 125.41020 * 180.09983 * 2 1 3 29 29 O 1.21581 * 123.04347 * 359.97176 * 28 2 1 30 30 H 1.08997 * 109.46848 * 179.88307 * 1 2 3 31 31 H 1.09002 * 109.46939 * 299.87777 * 1 2 3 32 32 H 1.08994 * 109.47329 * 59.87753 * 1 2 3 33 33 H 1.09005 * 110.58951 * 61.44371 * 3 2 1 34 34 H 1.09000 * 110.65761 * 298.52991 * 3 2 1 35 35 H 1.08998 * 109.59122 * 246.15411 * 9 8 6 36 36 H 1.09003 * 109.58900 * 6.58467 * 9 8 6 37 37 H 1.09001 * 109.49509 * 174.58517 * 10 9 8 38 38 H 1.08997 * 109.49766 * 294.64773 * 10 9 8 39 39 H 1.09001 * 109.46429 * 58.65248 * 11 10 9 40 40 H 1.09005 * 109.45829 * 178.61627 * 11 10 9 41 41 H 0.96996 * 119.99645 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47300 * 206.26686 * 23 14 12 43 43 H 1.09000 * 109.47285 * 326.26541 * 23 14 12 44 44 H 1.09000 * 109.46904 * 186.24611 * 24 23 14 45 45 H 1.09003 * 109.46448 * 306.23815 * 24 23 14 46 46 H 0.96708 * 114.00466 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.58834 * 353.41847 * 26 8 6 48 48 H 1.09000 * 109.58733 * 113.84195 * 26 8 6 49 49 H 0.97002 * 125.41217 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3184 1.2017 0.0000 4 6 3.7504 0.6326 0.0007 5 1 4.2858 0.9449 0.8973 6 6 4.4934 1.0681 -1.2360 7 8 4.5738 0.3226 -2.1892 8 7 5.0684 2.2862 -1.2827 9 6 4.9790 3.2006 -0.1362 10 6 6.3929 3.6449 0.2515 11 6 7.0904 4.2397 -0.9739 12 6 7.2016 3.1742 -2.0669 13 1 7.7598 2.3190 -1.6859 14 7 7.8981 3.7350 -3.2274 15 6 7.3790 4.8226 -3.8777 16 1 6.3106 4.9175 -4.0032 17 6 8.2262 5.8031 -4.3756 18 7 7.8214 6.5896 -5.3502 19 14 9.9407 6.0061 -3.6625 20 1 10.9147 5.2535 -4.4931 21 1 10.3059 7.4455 -3.6536 22 1 9.9646 5.4809 -2.2736 23 6 9.1498 3.1322 -3.6921 24 6 8.8368 1.9843 -4.6540 25 8 8.2353 2.5072 -5.8399 26 6 5.8012 2.7227 -2.4790 27 7 3.5538 -0.8248 -0.0017 28 6 2.2411 -1.0917 -0.0019 29 8 1.7946 -2.2226 -0.0034 30 1 -0.3633 -1.0277 -0.0021 31 1 -0.3633 0.5119 0.8911 32 1 -0.3634 0.5157 -0.8888 33 1 2.1426 1.7967 0.8963 34 1 2.1438 1.7973 -0.8961 35 1 4.3842 4.0722 -0.4094 36 1 4.5136 2.6873 0.7053 37 1 6.3349 4.3973 1.0380 38 1 6.9584 2.7854 0.6113 39 1 6.5110 5.0841 -1.3474 40 1 8.0880 4.5791 -0.6948 41 1 8.4135 7.2745 -5.6983 42 1 9.7465 3.8852 -4.2070 43 1 9.7075 2.7486 -2.8377 44 1 9.7598 1.4654 -4.9130 45 1 8.1498 1.2864 -4.1753 46 1 8.0091 1.8337 -6.4961 47 1 5.8782 1.8941 -3.1830 48 1 5.2746 3.5546 -2.9468 49 1 4.2621 -1.4875 -0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689205539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:24 Heat of formation + Delta-G solvation = -83.036827 kcal Electronic energy + Delta-G solvation = -31692.800825 eV Core-core repulsion = 27462.697476 eV Total energy + Delta-G solvation = -4230.103349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48948 -40.87583 -39.17039 -37.83831 -37.37925 -36.37680 -35.10629 -33.92897 -33.15847 -31.78054 -30.42197 -29.24652 -28.19599 -26.43113 -25.88291 -24.52647 -23.70011 -22.71566 -21.63693 -21.36766 -20.21426 -18.85375 -18.56570 -18.44384 -18.27687 -17.39877 -17.28143 -17.07643 -16.49428 -16.19651 -15.98594 -15.46019 -15.37327 -15.18981 -15.11926 -14.91579 -14.63909 -14.54891 -14.49402 -14.17430 -14.03028 -13.88963 -13.54559 -13.29955 -13.20453 -13.02937 -12.94561 -12.84323 -12.44164 -12.13258 -11.92634 -11.74028 -11.65590 -11.53142 -11.51964 -11.29258 -11.23782 -10.73632 -10.55719 -10.35137 -9.71852 -9.59179 -8.66379 -8.06344 -5.43304 1.32052 1.34698 1.42792 1.53184 1.59763 1.77661 2.09939 2.51452 2.85000 3.09831 3.25750 3.30008 3.38441 3.66593 3.83856 3.97548 4.08774 4.13929 4.20951 4.25889 4.38784 4.46812 4.47906 4.50497 4.53278 4.60132 4.65282 4.71967 4.75762 4.84628 4.86441 4.92019 4.97135 5.00254 5.04419 5.12691 5.27222 5.46895 5.49863 5.61491 5.66248 6.00369 6.05392 6.29138 6.32516 6.44626 7.02467 7.07620 7.12753 7.42908 7.73695 8.13424 9.13707 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.003046 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.050620 B = 9189.176285 C = 9682.229709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.638 5.638 3 C 0.105 3.895 4 C 0.111 3.889 5 H 0.166 0.834 6 C 0.497 3.503 7 O -0.583 6.583 8 N -0.594 5.594 9 C 0.096 3.904 10 C -0.123 4.123 11 C -0.125 4.125 12 C 0.168 3.832 13 H 0.068 0.932 14 N -0.601 5.601 15 C -0.219 4.219 16 H 0.037 0.963 17 C -0.017 4.017 18 N -0.952 5.952 19 Si 0.935 3.065 20 H -0.290 1.290 21 H -0.316 1.316 22 H -0.247 1.247 23 C 0.121 3.879 24 C 0.063 3.937 25 O -0.575 6.575 26 C 0.120 3.880 27 N -0.715 5.715 28 C 0.692 3.308 29 O -0.635 6.635 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.256 0.744 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.376 0.624 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 -8.227 19.272 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.377 5.377 3 C -0.018 4.018 4 C 0.002 3.998 5 H 0.183 0.817 6 C 0.284 3.716 7 O -0.462 6.462 8 N -0.326 5.326 9 C -0.024 4.024 10 C -0.162 4.162 11 C -0.164 4.164 12 C 0.061 3.939 13 H 0.086 0.914 14 N -0.323 5.323 15 C -0.349 4.349 16 H 0.055 0.945 17 C -0.213 4.213 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.218 1.218 21 H -0.245 1.245 22 H -0.170 1.170 23 C -0.005 4.005 24 C -0.017 4.017 25 O -0.380 6.380 26 C -0.005 4.005 27 N -0.375 5.375 28 C 0.392 3.608 29 O -0.517 6.517 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.222 0.778 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -7.963 -8.449 19.027 22.289 hybrid contribution 1.358 -0.299 -1.434 1.998 sum -6.605 -8.748 17.593 20.728 Atomic orbital electron populations 1.21631 0.74085 1.03525 1.03568 1.47283 1.07392 1.05518 1.77462 1.22688 0.84397 0.88190 1.06527 1.22181 0.98177 0.81839 0.97609 0.81657 1.21395 0.79375 0.81145 0.89656 1.90733 1.61751 1.54291 1.39448 1.48272 1.51805 1.15401 1.17148 1.22266 0.98425 0.94029 0.87720 1.21922 0.95214 1.02018 0.97030 1.21888 1.00551 0.98554 0.95440 1.20719 0.91111 0.95183 0.86884 0.91387 1.44126 1.25110 1.31924 1.31139 1.18253 0.91488 0.96506 1.28621 0.94489 1.25912 1.01171 0.96625 0.97570 1.70028 1.38751 1.24167 1.26777 0.85988 0.82029 0.74766 0.80674 1.21810 1.24504 1.17011 1.21537 0.88826 0.94367 0.95733 1.22876 0.95841 0.96255 0.86737 1.86822 1.83377 1.38071 1.29773 1.21697 0.93707 0.98181 0.86925 1.44905 1.06338 1.07490 1.78770 1.16146 0.82534 0.84726 0.77345 1.90905 1.76818 1.23074 1.60929 0.91435 0.88623 0.90979 0.83379 0.89907 0.89980 0.85251 0.87864 0.90509 0.93176 0.93158 0.93543 0.94265 0.89814 0.92630 0.94380 0.77775 0.92875 0.93426 0.72395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.49 11.22 127.77 1.43 2.92 16 2 N -0.64 -11.63 3.36 -862.59 -2.90 -14.53 16 3 C 0.10 1.17 7.07 86.58 0.61 1.78 16 4 C 0.11 1.60 3.16 44.51 0.14 1.74 16 5 H 0.17 0.80 6.64 -2.39 -0.02 0.78 16 6 C 0.50 12.09 6.81 87.66 0.60 12.68 16 7 O -0.58 -20.96 15.99 -3.02 -0.05 -21.01 16 8 N -0.59 -13.77 2.98 -819.65 -2.44 -16.21 16 9 C 0.10 1.27 6.25 86.36 0.54 1.81 16 10 C -0.12 -1.94 6.08 30.67 0.19 -1.76 16 11 C -0.13 -3.60 5.11 30.62 0.16 -3.45 16 12 C 0.17 5.71 2.77 44.94 0.12 5.83 16 13 H 0.07 2.11 7.85 -2.39 -0.02 2.09 16 14 N -0.60 -26.15 1.99 -678.30 -1.35 -27.50 16 15 C -0.22 -11.77 8.42 84.04 0.71 -11.07 16 16 H 0.04 2.25 6.89 -2.91 -0.02 2.23 16 17 C -0.02 -1.00 5.28 84.86 0.45 -0.55 16 18 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 19 Si 0.94 45.41 25.06 68.60 1.72 47.13 16 20 H -0.29 -13.99 6.67 99.48 0.66 -13.32 16 21 H -0.32 -15.78 7.11 99.48 0.71 -15.07 16 22 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 23 C 0.12 4.89 4.72 86.38 0.41 5.30 16 24 C 0.06 2.30 7.38 71.98 0.53 2.83 16 25 O -0.58 -24.74 13.36 -148.98 -1.99 -26.73 16 26 C 0.12 4.11 5.75 86.23 0.50 4.60 16 27 N -0.72 -14.98 5.62 -460.34 -2.59 -17.56 16 28 C 0.69 18.06 8.60 179.57 1.55 19.60 16 29 O -0.64 -22.32 17.29 -3.97 -0.07 -22.39 16 30 H 0.07 1.17 7.52 -2.39 -0.02 1.15 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.15 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.08 1.08 7.72 -2.39 -0.02 1.06 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 0.40 5.42 -2.39 -0.01 0.39 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 1.71 7.70 -2.39 -0.02 1.69 16 40 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.04 1.83 3.47 -2.39 -0.01 1.82 16 43 H 0.08 2.79 8.00 -2.39 -0.02 2.77 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.38 12.08 9.12 -74.05 -0.68 11.40 16 47 H 0.05 2.16 7.01 -2.39 -0.02 2.14 16 48 H 0.05 1.92 6.79 -2.39 -0.02 1.90 16 49 H 0.43 8.75 8.96 -92.71 -0.83 7.92 16 Total: -1.00 -91.31 383.81 -2.00 -93.30 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.56 Total: 22.84 kcal Atomic # 6 Polarization: 34.36 SS G_CDS: 7.93 Total: 42.28 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -8.98 Total: -135.42 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -2.11 Total: -70.13 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.72 Total: 47.13 kcal Total: -91.31 -2.00 -93.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.266 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds