Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47055 * 125.40816 * 2 1 4 4 C 1.54107 * 103.86045 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.54482 * 241.25796 * 4 3 2 6 6 C 1.50700 * 110.54766 * 118.59604 * 4 3 2 7 7 O 1.21284 * 119.99752 * 261.99735 * 6 4 3 8 8 N 1.34777 * 120.00026 * 82.00079 * 6 4 3 9 9 C 1.46918 * 120.63138 * 359.97438 * 8 6 4 10 10 C 1.53196 * 108.89197 * 233.56073 * 9 8 6 11 11 C 1.53069 * 109.29841 * 305.57589 * 10 9 8 12 12 C 1.53042 * 109.65283 * 61.15435 * 11 10 9 13 13 H 1.08994 * 109.52611 * 58.66984 * 12 11 10 14 14 N 1.46508 * 109.49791 * 178.74790 * 12 11 10 15 15 C 1.36941 * 119.99413 * 59.83635 * 14 12 11 16 16 H 1.08000 * 120.00229 * 326.14516 * 15 14 12 17 17 C 1.38815 * 119.99221 * 146.15148 * 15 14 12 18 18 N 1.31618 * 120.00100 * 337.65070 * 17 15 14 19 19 Si 1.86804 * 119.99704 * 157.66149 * 17 15 14 20 20 H 1.48500 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47409 * 119.99542 * 19 17 15 22 22 H 1.48503 * 109.47002 * 239.99286 * 19 17 15 23 23 C 1.46493 * 120.00338 * 239.84039 * 14 12 11 24 24 C 1.53004 * 109.47266 * 84.43438 * 23 14 12 25 25 O 1.42900 * 109.46996 * 64.99747 * 24 23 14 26 26 C 1.46928 * 120.62880 * 180.02562 * 8 6 4 27 27 N 1.47050 * 103.98979 * 359.92550 * 4 3 2 28 28 C 1.33949 * 125.41266 * 180.02562 * 2 1 3 29 29 O 1.21583 * 123.03993 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47506 * 89.99847 * 1 2 3 31 31 H 1.09004 * 109.46872 * 210.00146 * 1 2 3 32 32 H 1.08997 * 109.47341 * 329.99488 * 1 2 3 33 33 H 1.09001 * 110.54917 * 61.40945 * 3 2 1 34 34 H 1.09004 * 110.67165 * 298.65563 * 3 2 1 35 35 H 1.09005 * 109.58991 * 353.41773 * 9 8 6 36 36 H 1.09001 * 109.58945 * 113.70663 * 9 8 6 37 37 H 1.08998 * 109.49669 * 65.39127 * 10 9 8 38 38 H 1.09009 * 109.49524 * 185.48439 * 10 9 8 39 39 H 1.09003 * 109.34796 * 301.13443 * 11 10 9 40 40 H 1.08997 * 109.44075 * 181.23495 * 11 10 9 41 41 H 0.97002 * 119.99594 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.47438 * 204.43516 * 23 14 12 43 43 H 1.09005 * 109.46926 * 324.44058 * 23 14 12 44 44 H 1.08999 * 109.47144 * 185.00121 * 24 23 14 45 45 H 1.09000 * 109.46906 * 305.00320 * 24 23 14 46 46 H 0.96702 * 114.00059 * 179.97438 * 25 24 23 47 47 H 1.09005 * 109.58270 * 246.15557 * 26 8 6 48 48 H 1.09004 * 109.58672 * 6.43388 * 26 8 6 49 49 H 0.97008 * 125.40616 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9484 0.8942 6 6 4.4899 1.0668 -1.2398 7 8 4.5703 0.3191 -2.1914 8 7 5.0621 2.2861 -1.2906 9 6 4.9729 3.2031 -0.1462 10 6 4.4118 4.5446 -0.6281 11 6 5.2661 5.0631 -1.7876 12 6 5.2143 4.0688 -2.9499 13 1 4.1808 3.9348 -3.2689 14 7 6.0087 4.5824 -4.0686 15 6 7.3450 4.8312 -3.9020 16 1 7.7141 5.1842 -2.9505 17 6 8.2250 4.6296 -4.9565 18 7 7.9004 3.8151 -5.9381 19 14 9.8701 5.5142 -4.9821 20 1 9.9927 6.3666 -3.7723 21 1 10.9690 4.5155 -4.9979 22 1 9.9563 6.3641 -6.1968 23 6 5.3735 4.8300 -5.3652 24 6 4.7292 6.2178 -5.3609 25 8 5.7461 7.2147 -5.2415 26 6 5.7860 2.7238 -2.4919 27 7 3.5569 -0.8252 0.0009 28 6 2.2411 -1.0917 -0.0005 29 8 1.7946 -2.2225 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 2.1406 1.7934 0.8962 34 1 2.1413 1.7956 -0.8949 35 1 4.3111 2.7806 0.6099 36 1 5.9650 3.3538 0.2795 37 1 3.3850 4.4086 -0.9676 38 1 4.4323 5.2631 0.1915 39 1 6.2972 5.1776 -1.4534 40 1 4.8820 6.0282 -2.1180 41 1 8.5156 3.6740 -6.6747 42 1 6.1249 4.7808 -6.1532 43 1 4.6083 4.0748 -5.5451 44 1 4.1815 6.3670 -6.2914 45 1 4.0423 6.2968 -4.5182 46 1 5.4092 8.1211 -5.2324 47 1 6.8449 2.8372 -2.2594 48 1 5.6628 1.9838 -3.2827 49 1 4.2668 -1.4863 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689205541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = -57.269218 kcal Electronic energy + Delta-G solvation = -31692.840939 eV Core-core repulsion = 27463.854958 eV Total energy + Delta-G solvation = -4228.985982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.51074 -39.63359 -37.60942 -36.32025 -36.21995 -34.69347 -34.25006 -32.38929 -31.31274 -30.22120 -29.22093 -27.60475 -27.12627 -25.29718 -24.26766 -23.37970 -22.46325 -20.87747 -20.69809 -19.96394 -18.93073 -17.92363 -17.56165 -16.63197 -16.49833 -16.33270 -16.03432 -15.26166 -15.10710 -14.79299 -14.52348 -14.39554 -14.15053 -14.06477 -13.66930 -13.63829 -13.62668 -13.35024 -12.97921 -12.76221 -12.57723 -12.54859 -12.46510 -12.12934 -11.96286 -11.42955 -11.27371 -10.92474 -10.81185 -10.68669 -10.51924 -10.39072 -10.19818 -10.13656 -10.00741 -9.91013 -9.61296 -9.30090 -9.13166 -8.77023 -8.47402 -8.32602 -6.61867 -5.75525 -3.27306 2.28506 2.63134 2.84892 3.17056 3.41677 3.50266 3.51931 3.70333 4.06172 4.29232 4.51525 4.52000 4.70205 4.85586 4.99720 5.06788 5.15021 5.18345 5.24566 5.28683 5.36357 5.43946 5.47274 5.57868 5.68563 5.74618 5.83945 5.97594 6.03032 6.08916 6.21765 6.25583 6.41851 6.46830 6.55501 6.60577 6.67120 6.79768 6.93819 6.99793 7.01424 7.26233 7.58313 7.67732 7.84552 8.24472 8.40885 8.44574 8.58169 9.19045 9.84838 10.37104 11.27127 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.003058 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.771027 B = 9154.177704 C = 9596.562696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.103 3.897 5 H 0.114 0.886 6 C 0.497 3.503 7 O -0.523 6.523 8 N -0.601 5.601 9 C 0.104 3.896 10 C -0.132 4.132 11 C -0.127 4.127 12 C 0.167 3.833 13 H 0.048 0.952 14 N -0.567 5.567 15 C -0.241 4.241 16 H 0.060 0.940 17 C 0.015 3.985 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.141 3.859 24 C 0.061 3.939 25 O -0.544 6.544 26 C 0.106 3.894 27 N -0.715 5.715 28 C 0.706 3.294 29 O -0.585 6.585 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.253 0.747 42 H 0.109 0.891 43 H 0.036 0.964 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.349 0.651 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 2.096 14.440 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.377 5.377 3 C -0.017 4.017 4 C -0.008 4.008 5 H 0.132 0.868 6 C 0.281 3.719 7 O -0.399 6.399 8 N -0.335 5.335 9 C -0.019 4.019 10 C -0.170 4.170 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.066 0.934 14 N -0.286 5.286 15 C -0.371 4.371 16 H 0.078 0.922 17 C -0.184 4.184 18 N -0.533 5.533 19 Si 0.729 3.271 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.014 3.986 24 C -0.019 4.019 25 O -0.345 6.345 26 C -0.017 4.017 27 N -0.377 5.377 28 C 0.406 3.594 29 O -0.462 6.462 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.127 0.873 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.192 0.808 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -12.282 0.513 13.757 18.449 hybrid contribution 0.881 1.041 -0.171 1.374 sum -11.402 1.554 13.586 17.804 Atomic orbital electron populations 1.21391 0.75383 1.03106 1.02090 1.46987 1.06410 1.05599 1.78696 1.22285 0.86363 0.89038 1.03986 1.21903 0.97110 0.83223 0.98548 0.86839 1.20599 0.80094 0.82257 0.88965 1.90766 1.59439 1.52542 1.37120 1.48380 1.53487 1.14220 1.17395 1.21801 1.01651 0.90598 0.87841 1.21939 0.99951 0.95758 0.99394 1.21988 0.99926 0.99594 0.95129 1.20621 0.94106 0.90315 0.89146 0.93386 1.43717 1.05830 1.72389 1.06671 1.18829 0.82282 1.37295 0.98650 0.92227 1.24986 0.97539 0.97162 0.98737 1.69979 1.36622 1.34430 1.12301 0.86310 0.83701 0.79407 0.77673 1.20329 1.22205 1.21607 1.21089 0.97107 0.88714 0.91668 1.23063 0.90041 0.92814 0.96026 1.86853 1.34627 1.16057 1.96936 1.22428 0.96196 0.98028 0.85056 1.44914 1.06868 1.06263 1.79645 1.15862 0.81670 0.84572 0.77302 1.90950 1.75897 1.20935 1.58452 0.92570 0.90350 0.90821 0.88889 0.89472 0.90794 0.90937 0.92090 0.91161 0.91470 0.92229 0.93715 0.87329 0.94604 0.96213 0.96090 0.80826 0.90382 0.89429 0.72354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.99 11.03 59.84 0.66 1.65 16 2 N -0.64 -7.06 3.36 -186.64 -0.63 -7.68 16 3 C 0.11 0.92 6.74 -3.16 -0.02 0.90 16 4 C 0.10 1.05 3.14 -68.20 -0.21 0.84 16 5 H 0.11 0.79 6.90 -51.93 -0.36 0.43 16 6 C 0.50 7.25 6.81 -10.99 -0.07 7.17 16 7 O -0.52 -10.33 15.99 5.55 0.09 -10.24 16 8 N -0.60 -8.41 2.97 -172.79 -0.51 -8.92 16 9 C 0.10 1.02 6.21 -3.71 -0.02 0.99 16 10 C -0.13 -1.36 6.09 -26.59 -0.16 -1.53 16 11 C -0.13 -1.94 5.10 -26.67 -0.14 -2.07 16 12 C 0.17 3.09 2.79 -67.83 -0.19 2.90 16 13 H 0.05 0.88 7.87 -51.93 -0.41 0.48 16 14 N -0.57 -12.90 2.35 -165.55 -0.39 -13.28 16 15 C -0.24 -6.14 7.95 -15.06 -0.12 -6.26 16 16 H 0.06 1.52 6.86 -52.49 -0.36 1.16 16 17 C 0.02 0.41 4.91 -17.43 -0.09 0.33 16 18 N -0.89 -25.18 11.34 55.49 0.63 -24.55 16 19 Si 0.90 21.73 29.61 -169.99 -5.03 16.70 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.14 3.18 5.57 -4.04 -0.02 3.15 16 24 C 0.06 1.15 7.39 37.16 0.27 1.42 16 25 O -0.54 -10.88 13.40 -35.23 -0.47 -11.36 16 26 C 0.11 1.98 5.76 -3.73 -0.02 1.96 16 27 N -0.72 -8.94 5.64 -59.24 -0.33 -9.27 16 28 C 0.71 10.21 8.61 -88.13 -0.76 9.45 16 29 O -0.58 -10.63 17.53 5.29 0.09 -10.53 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.80 7.72 -51.93 -0.40 0.40 16 35 H 0.07 0.46 5.33 -51.93 -0.28 0.18 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 1.14 7.02 -51.93 -0.36 0.77 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.11 2.88 5.34 -51.93 -0.28 2.60 16 43 H 0.04 0.77 8.04 -51.93 -0.42 0.36 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.35 5.01 9.12 45.56 0.42 5.42 16 47 H 0.08 1.61 7.50 -51.93 -0.39 1.22 16 48 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 49 H 0.43 5.11 8.96 -40.82 -0.37 4.74 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.27 388.79 -8.51 -44.78 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.92 Total: 7.58 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: -0.89 Total: 20.91 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -1.23 Total: -63.71 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.29 Total: -32.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.27 -8.51 -44.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.487 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds