Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47055 * 125.40816 * 2 1 4 4 C 1.54107 * 103.86045 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.54482 * 241.25796 * 4 3 2 6 6 C 1.50700 * 110.54766 * 118.59604 * 4 3 2 7 7 O 1.21284 * 119.99752 * 261.99735 * 6 4 3 8 8 N 1.34777 * 120.00026 * 82.00079 * 6 4 3 9 9 C 1.46918 * 120.63138 * 359.97438 * 8 6 4 10 10 C 1.53196 * 108.89197 * 233.56073 * 9 8 6 11 11 C 1.53069 * 109.29841 * 305.57589 * 10 9 8 12 12 C 1.53042 * 109.65283 * 61.15435 * 11 10 9 13 13 H 1.08994 * 109.52611 * 58.66984 * 12 11 10 14 14 N 1.46508 * 109.49791 * 178.74790 * 12 11 10 15 15 C 1.36941 * 119.99413 * 59.83635 * 14 12 11 16 16 H 1.08000 * 120.00229 * 326.14516 * 15 14 12 17 17 C 1.38815 * 119.99221 * 146.15148 * 15 14 12 18 18 N 1.31618 * 120.00100 * 337.65070 * 17 15 14 19 19 Si 1.86804 * 119.99704 * 157.66149 * 17 15 14 20 20 H 1.48500 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47409 * 119.99542 * 19 17 15 22 22 H 1.48503 * 109.47002 * 239.99286 * 19 17 15 23 23 C 1.46493 * 120.00338 * 239.84039 * 14 12 11 24 24 C 1.53004 * 109.47266 * 84.43438 * 23 14 12 25 25 O 1.42900 * 109.46996 * 64.99747 * 24 23 14 26 26 C 1.46928 * 120.62880 * 180.02562 * 8 6 4 27 27 N 1.47050 * 103.98979 * 359.92550 * 4 3 2 28 28 C 1.33949 * 125.41266 * 180.02562 * 2 1 3 29 29 O 1.21583 * 123.03993 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47506 * 89.99847 * 1 2 3 31 31 H 1.09004 * 109.46872 * 210.00146 * 1 2 3 32 32 H 1.08997 * 109.47341 * 329.99488 * 1 2 3 33 33 H 1.09001 * 110.54917 * 61.40945 * 3 2 1 34 34 H 1.09004 * 110.67165 * 298.65563 * 3 2 1 35 35 H 1.09005 * 109.58991 * 353.41773 * 9 8 6 36 36 H 1.09001 * 109.58945 * 113.70663 * 9 8 6 37 37 H 1.08998 * 109.49669 * 65.39127 * 10 9 8 38 38 H 1.09009 * 109.49524 * 185.48439 * 10 9 8 39 39 H 1.09003 * 109.34796 * 301.13443 * 11 10 9 40 40 H 1.08997 * 109.44075 * 181.23495 * 11 10 9 41 41 H 0.97002 * 119.99594 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.47438 * 204.43516 * 23 14 12 43 43 H 1.09005 * 109.46926 * 324.44058 * 23 14 12 44 44 H 1.08999 * 109.47144 * 185.00121 * 24 23 14 45 45 H 1.09000 * 109.46906 * 305.00320 * 24 23 14 46 46 H 0.96702 * 114.00059 * 179.97438 * 25 24 23 47 47 H 1.09005 * 109.58270 * 246.15557 * 26 8 6 48 48 H 1.09004 * 109.58672 * 6.43388 * 26 8 6 49 49 H 0.97008 * 125.40616 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9484 0.8942 6 6 4.4899 1.0668 -1.2398 7 8 4.5703 0.3191 -2.1914 8 7 5.0621 2.2861 -1.2906 9 6 4.9729 3.2031 -0.1462 10 6 4.4118 4.5446 -0.6281 11 6 5.2661 5.0631 -1.7876 12 6 5.2143 4.0688 -2.9499 13 1 4.1808 3.9348 -3.2689 14 7 6.0087 4.5824 -4.0686 15 6 7.3450 4.8312 -3.9020 16 1 7.7141 5.1842 -2.9505 17 6 8.2250 4.6296 -4.9565 18 7 7.9004 3.8151 -5.9381 19 14 9.8701 5.5142 -4.9821 20 1 9.9927 6.3666 -3.7723 21 1 10.9690 4.5155 -4.9979 22 1 9.9563 6.3641 -6.1968 23 6 5.3735 4.8300 -5.3652 24 6 4.7292 6.2178 -5.3609 25 8 5.7461 7.2147 -5.2415 26 6 5.7860 2.7238 -2.4919 27 7 3.5569 -0.8252 0.0009 28 6 2.2411 -1.0917 -0.0005 29 8 1.7946 -2.2225 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 2.1406 1.7934 0.8962 34 1 2.1413 1.7956 -0.8949 35 1 4.3111 2.7806 0.6099 36 1 5.9650 3.3538 0.2795 37 1 3.3850 4.4086 -0.9676 38 1 4.4323 5.2631 0.1915 39 1 6.2972 5.1776 -1.4534 40 1 4.8820 6.0282 -2.1180 41 1 8.5156 3.6740 -6.6747 42 1 6.1249 4.7808 -6.1532 43 1 4.6083 4.0748 -5.5451 44 1 4.1815 6.3670 -6.2914 45 1 4.0423 6.2968 -4.5182 46 1 5.4092 8.1211 -5.2324 47 1 6.8449 2.8372 -2.2594 48 1 5.6628 1.9838 -3.2827 49 1 4.2668 -1.4863 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689205541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -88.145595 kcal Electronic energy + Delta-G solvation = -31694.179839 eV Core-core repulsion = 27463.854958 eV Total energy + Delta-G solvation = -4230.324882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.47631 -40.81315 -39.02881 -37.71031 -37.38648 -36.26511 -35.10063 -33.88082 -32.81263 -31.56933 -30.32967 -29.02080 -28.16395 -26.39348 -25.94740 -24.40835 -23.70766 -22.21852 -21.70458 -21.48398 -20.10667 -18.85999 -18.62725 -18.22923 -18.11651 -17.36526 -17.11591 -16.78553 -16.39040 -16.14046 -15.95008 -15.52438 -15.27394 -15.16049 -15.04559 -14.92021 -14.69597 -14.47814 -14.16765 -14.01825 -13.99280 -13.56253 -13.29845 -13.22328 -13.05388 -12.94885 -12.90235 -12.77852 -12.40679 -12.19898 -11.85099 -11.74711 -11.63423 -11.57536 -11.51804 -11.25785 -11.22592 -10.63844 -10.42758 -10.35298 -9.62819 -9.58159 -8.51531 -7.75237 -5.28705 1.34100 1.45581 1.50151 1.57575 1.60069 1.80762 2.11004 2.57499 2.87724 3.26103 3.33469 3.37559 3.58869 3.81411 3.85782 4.02268 4.14527 4.17713 4.22779 4.36558 4.48758 4.51081 4.52773 4.55531 4.67448 4.72019 4.72565 4.84094 4.87785 4.94488 4.96190 5.01055 5.03560 5.06796 5.17568 5.30051 5.53596 5.54793 5.62137 5.68114 5.76370 5.83835 5.99898 6.32738 6.47696 6.52593 7.11074 7.20553 7.26735 7.42463 7.95552 8.43603 9.23684 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.003058 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.771027 B = 9154.177704 C = 9596.562696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.635 5.635 3 C 0.106 3.894 4 C 0.111 3.889 5 H 0.165 0.835 6 C 0.493 3.507 7 O -0.588 6.588 8 N -0.595 5.595 9 C 0.096 3.904 10 C -0.122 4.122 11 C -0.117 4.117 12 C 0.166 3.834 13 H 0.050 0.950 14 N -0.582 5.582 15 C -0.222 4.222 16 H 0.060 0.940 17 C -0.041 4.041 18 N -0.926 5.926 19 Si 0.949 3.051 20 H -0.266 1.266 21 H -0.300 1.300 22 H -0.299 1.299 23 C 0.134 3.866 24 C 0.074 3.926 25 O -0.573 6.573 26 C 0.123 3.877 27 N -0.719 5.719 28 C 0.691 3.309 29 O -0.635 6.635 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.244 0.756 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.375 0.625 47 H 0.051 0.949 48 H 0.036 0.964 49 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 4.779 18.411 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.374 5.374 3 C -0.017 4.017 4 C 0.002 3.998 5 H 0.182 0.818 6 C 0.279 3.721 7 O -0.467 6.467 8 N -0.327 5.327 9 C -0.025 4.025 10 C -0.160 4.160 11 C -0.157 4.157 12 C 0.059 3.941 13 H 0.068 0.932 14 N -0.302 5.302 15 C -0.352 4.352 16 H 0.077 0.923 17 C -0.236 4.236 18 N -0.572 5.572 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.228 1.228 22 H -0.227 1.227 23 C 0.008 3.992 24 C -0.006 4.006 25 O -0.378 6.378 26 C -0.002 4.002 27 N -0.379 5.379 28 C 0.392 3.608 29 O -0.517 6.517 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.222 0.778 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -14.369 3.297 17.801 23.113 hybrid contribution 1.465 0.224 -1.410 2.046 sum -12.904 3.522 16.390 21.156 Atomic orbital electron populations 1.21627 0.73882 1.04696 1.02310 1.47202 1.07401 1.05415 1.77373 1.22663 0.84108 0.88201 1.06705 1.22188 0.98463 0.81867 0.97311 0.81840 1.21525 0.79364 0.81440 0.89728 1.90751 1.61760 1.54349 1.39884 1.48361 1.52326 1.15033 1.17012 1.22245 1.03577 0.89728 0.86906 1.21924 0.99373 0.96463 0.98242 1.21827 1.00115 0.98295 0.95426 1.20802 0.93218 0.90905 0.89178 0.93175 1.43923 1.05477 1.73093 1.07714 1.18991 0.83491 1.34740 0.97995 0.92271 1.25573 1.00237 0.98547 0.99272 1.70127 1.37397 1.36651 1.13069 0.85500 0.80893 0.78276 0.77429 1.19006 1.22816 1.22684 1.20996 0.96073 0.91446 0.90715 1.22777 0.89519 0.90284 0.98028 1.86765 1.35953 1.18025 1.97076 1.21825 0.95358 0.96973 0.86089 1.45012 1.06392 1.07552 1.78907 1.16248 0.82437 0.84802 0.77359 1.90900 1.76847 1.23170 1.60766 0.93087 0.91449 0.86542 0.83047 0.89699 0.85492 0.90265 0.90521 0.87397 0.93362 0.92674 0.94688 0.91363 0.94887 0.93985 0.93959 0.77814 0.93071 0.94495 0.72554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.56 11.03 127.77 1.41 2.97 16 2 N -0.64 -12.14 3.36 -863.13 -2.90 -15.04 16 3 C 0.11 1.25 6.74 86.65 0.58 1.84 16 4 C 0.11 1.85 3.14 44.52 0.14 1.99 16 5 H 0.16 1.16 6.90 -2.38 -0.02 1.14 16 6 C 0.49 13.68 6.81 87.66 0.60 14.28 16 7 O -0.59 -24.05 15.99 -3.04 -0.05 -24.09 16 8 N -0.59 -15.50 2.97 -818.97 -2.44 -17.93 16 9 C 0.10 1.36 6.21 86.37 0.54 1.90 16 10 C -0.12 -1.83 6.09 30.68 0.19 -1.65 16 11 C -0.12 -3.27 5.10 30.63 0.16 -3.11 16 12 C 0.17 6.11 2.79 45.05 0.13 6.24 16 13 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 14 N -0.58 -26.99 2.35 -677.67 -1.59 -28.58 16 15 C -0.22 -11.52 7.95 84.03 0.67 -10.85 16 16 H 0.06 3.05 6.86 -2.91 -0.02 3.03 16 17 C -0.04 -2.27 4.91 84.86 0.42 -1.85 16 18 N -0.93 -55.29 11.34 21.65 0.25 -55.04 16 19 Si 0.95 45.92 29.61 68.60 2.03 47.95 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 23 C 0.13 6.21 5.57 86.38 0.48 6.69 16 24 C 0.07 2.68 7.39 71.98 0.53 3.22 16 25 O -0.57 -22.23 13.40 -148.98 -2.00 -24.22 16 26 C 0.12 4.72 5.76 86.35 0.50 5.21 16 27 N -0.72 -16.93 5.64 -459.91 -2.59 -19.52 16 28 C 0.69 19.28 8.61 179.48 1.54 20.82 16 29 O -0.63 -23.47 17.53 -3.98 -0.07 -23.54 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.08 1.13 7.72 -2.38 -0.02 1.11 16 35 H 0.13 0.52 5.33 -2.38 -0.01 0.51 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.05 1.53 7.02 -2.39 -0.02 1.51 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.07 3.79 5.34 -2.39 -0.01 3.78 16 43 H 0.03 1.49 8.04 -2.38 -0.02 1.47 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.38 9.93 9.12 -74.06 -0.68 9.26 16 47 H 0.05 2.21 7.50 -2.38 -0.02 2.19 16 48 H 0.04 1.78 7.00 -2.39 -0.02 1.76 16 49 H 0.43 10.09 8.96 -92.70 -0.83 9.26 16 Total: -1.00 -89.67 388.79 -2.00 -91.67 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.52 Total: 20.66 kcal Atomic # 6 Polarization: 39.82 SS G_CDS: 7.88 Total: 47.70 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -9.28 Total: -136.12 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -2.11 Total: -71.86 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -89.67 -2.00 -91.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.529 kcal (2) G-P(sol) polarization free energy of solvation -89.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds