Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00122 * 2 1 4 4 C 1.53008 * 109.46964 * 66.04614 * 3 2 1 5 5 C 1.53000 * 109.47198 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46866 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99523 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00147 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99957 * 179.97438 * 7 6 5 10 10 H 1.09005 * 109.70153 * 60.51155 * 9 7 6 11 11 C 1.53342 * 109.67600 * 181.02987 * 9 7 6 12 12 C 1.52927 * 108.67424 * 187.26485 * 11 9 7 13 13 N 1.45768 * 110.42123 * 309.02798 * 12 11 9 14 14 C 1.33356 * 124.09246 * 19.58391 * 13 12 11 15 15 O 1.21283 * 118.24896 * 177.48435 * 14 13 12 16 16 C 1.50177 * 123.50508 * 357.20044 * 14 13 12 17 17 C 1.46898 * 111.00354 * 236.04825 * 2 1 3 18 18 C 1.50700 * 109.47033 * 293.95542 * 17 2 1 19 19 O 1.21299 * 120.00174 * 359.97438 * 18 17 2 20 20 N 1.34778 * 120.00175 * 179.97438 * 18 17 2 21 21 C 1.37095 * 120.00213 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99809 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00414 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00243 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99694 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47387 * 89.99645 * 25 23 21 27 27 H 1.48492 * 109.47019 * 209.99634 * 25 23 21 28 28 H 1.48499 * 109.46852 * 329.99943 * 25 23 21 29 29 H 1.08991 * 109.46848 * 59.99873 * 1 2 3 30 30 H 1.09003 * 109.46547 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47086 * 299.99741 * 1 2 3 32 32 H 1.09000 * 109.47130 * 306.05170 * 3 2 1 33 33 H 1.08996 * 109.47187 * 186.04111 * 3 2 1 34 34 H 1.09000 * 109.47042 * 59.99861 * 4 3 2 35 35 H 1.09003 * 109.47032 * 300.00396 * 4 3 2 36 36 H 1.08992 * 109.46856 * 59.99595 * 5 4 3 37 37 H 1.09004 * 109.46532 * 299.99982 * 5 4 3 38 38 H 0.96993 * 120.00050 * 359.97438 * 6 5 4 39 39 H 1.08997 * 109.60108 * 307.01975 * 11 9 7 40 40 H 1.08998 * 109.60227 * 67.50583 * 11 9 7 41 41 H 1.09000 * 109.29632 * 69.55895 * 12 11 9 42 42 H 1.09000 * 109.29879 * 188.93714 * 12 11 9 43 43 H 0.97000 * 117.96517 * 199.30679 * 13 12 11 44 44 H 1.09000 * 109.40051 * 137.99930 * 16 14 13 45 45 H 1.09005 * 109.40234 * 257.81989 * 16 14 13 46 46 H 1.08997 * 109.47040 * 53.95417 * 17 2 1 47 47 H 1.08995 * 109.47559 * 173.95629 * 17 2 1 48 48 H 0.96999 * 120.00149 * 0.02562 * 20 18 17 49 49 H 0.97004 * 119.99939 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1792 3.4860 1.3181 6 7 1.8312 4.1426 2.5807 7 6 2.2119 5.4158 2.8054 8 8 2.8430 6.0177 1.9626 9 6 1.8535 6.0915 4.1039 10 1 2.2944 5.5440 4.9370 11 6 2.3777 7.5325 4.0979 12 6 2.1642 8.1369 5.4864 13 7 0.7848 7.9466 5.9174 14 6 -0.0413 7.0366 5.3998 15 8 -1.1547 6.9384 5.8704 16 6 0.3315 6.1310 4.2612 17 6 1.9955 -0.7659 -1.1376 18 6 1.6370 -2.2204 -0.9729 19 8 1.0054 -2.5833 -0.0030 20 7 2.0181 -3.1179 -1.9033 21 6 1.6924 -4.4411 -1.7532 22 1 1.1300 -4.7642 -0.8896 23 6 2.0849 -5.3664 -2.7127 24 7 1.7731 -6.6348 -2.5686 25 14 3.0569 -4.8074 -4.2067 26 1 4.5096 -4.8749 -3.9059 27 1 2.7482 -5.6932 -5.3578 28 1 2.6857 -3.4097 -4.5441 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3444 -0.1081 34 1 2.0658 1.5015 2.1492 35 1 0.5472 2.0844 1.4266 36 1 1.7446 4.0416 0.4873 37 1 3.2635 3.4593 1.2097 38 1 1.3261 3.6613 3.2545 39 1 3.4409 7.5338 3.8580 40 1 1.8324 8.1169 3.3569 41 1 2.8371 7.6556 6.1961 42 1 2.3844 9.2039 5.4526 43 1 0.4476 8.5147 6.6276 44 1 -0.0380 5.1254 4.4625 45 1 -0.1169 6.5038 3.3403 46 1 1.5612 -0.3871 -2.0628 47 1 3.0797 -0.6611 -1.1756 48 1 2.5235 -2.8278 -2.6787 49 1 2.0474 -7.2808 -3.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689796204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = -139.563017 kcal Electronic energy + Delta-G solvation = -28577.303998 eV Core-core repulsion = 24344.749489 eV Total energy + Delta-G solvation = -4232.554509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.69132 -40.53650 -40.36417 -38.33343 -37.35804 -36.25435 -35.80452 -34.30972 -33.73945 -32.43403 -30.62358 -29.48915 -27.79001 -26.72380 -25.87361 -24.34360 -23.37141 -22.07357 -21.23163 -21.16413 -20.18924 -20.13974 -18.58801 -17.90664 -17.81746 -17.41601 -16.91453 -16.83523 -16.78828 -16.47129 -16.23580 -16.02298 -15.67542 -15.39232 -15.12905 -15.00694 -14.84235 -14.66223 -14.48681 -14.31068 -14.22101 -13.69851 -13.32756 -13.07221 -12.89298 -12.79486 -12.72940 -12.68480 -12.49391 -12.40300 -12.29410 -12.08005 -12.05173 -11.96622 -11.61643 -11.45556 -11.39785 -10.64854 -10.34154 -10.21559 -10.08679 -10.07633 -9.18212 -8.39884 -6.00411 1.31001 1.36550 1.45190 1.53428 1.59534 1.98370 2.11592 2.24081 2.31499 2.68549 3.16154 3.28514 3.42257 3.59241 3.68856 3.77021 3.99251 4.04134 4.15040 4.16224 4.25627 4.29297 4.41082 4.41657 4.45644 4.55843 4.61777 4.63241 4.66891 4.72188 4.77787 4.81926 4.87868 5.01359 5.12767 5.21238 5.22734 5.31905 5.46428 5.54749 5.80415 5.91993 6.03688 6.23793 6.29611 6.52856 6.61856 6.90641 7.16260 7.21699 7.42229 7.99959 8.77784 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.001491 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.817072 B =18779.229479 C =19418.467918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.058 3.942 4 C -0.117 4.117 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.519 3.481 8 O -0.576 6.576 9 C -0.102 4.102 10 H 0.130 0.870 11 C -0.118 4.118 12 C 0.110 3.890 13 N -0.712 5.712 14 C 0.520 3.480 15 O -0.607 6.607 16 C -0.122 4.122 17 C 0.054 3.946 18 C 0.451 3.549 19 O -0.605 6.605 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.232 1.232 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.405 0.595 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.389 0.611 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 34.048 10.717 36.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.156 4.156 5 C 0.003 3.997 6 N -0.371 5.371 7 C 0.306 3.694 8 O -0.455 6.455 9 C -0.124 4.124 10 H 0.147 0.853 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.362 5.362 14 C 0.308 3.692 15 O -0.489 6.489 16 C -0.162 4.162 17 C -0.077 4.077 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.155 1.155 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.241 0.759 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.139 0.861 48 H 0.224 0.776 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.300 33.598 11.173 35.802 hybrid contribution -0.398 -0.348 -1.046 1.171 sum 4.903 33.250 10.128 35.102 Atomic orbital electron populations 1.22461 0.87063 1.02019 1.00883 1.61485 1.08755 1.13896 1.42399 1.22100 1.01056 0.86502 0.97282 1.21655 1.02047 0.93470 0.98387 1.21199 1.00342 0.92195 0.85997 1.46001 1.57234 1.13617 1.20247 1.20789 0.78317 0.81524 0.88777 1.90718 1.41565 1.65329 1.47915 1.21456 0.95975 0.98648 0.96274 0.85256 1.21728 1.03823 0.92995 0.97030 1.21643 0.80892 1.03351 0.95407 1.45554 1.14142 1.36702 1.39828 1.20288 0.84033 0.80874 0.84013 1.90783 1.23507 1.71734 1.62919 1.21622 0.95246 1.01648 0.97658 1.21836 1.02841 0.89220 0.93849 1.20941 0.82881 0.88909 0.83416 1.90516 1.44135 1.81464 1.32804 1.42050 1.51935 1.06798 1.22759 1.19000 1.34816 0.83135 1.08683 0.92679 1.26097 0.98662 0.94657 1.01934 1.69806 1.47305 1.03006 1.37507 0.85371 0.79038 0.80096 0.77051 1.18142 1.20150 1.15493 0.95061 0.93186 0.89948 0.93435 0.89384 0.90553 0.90655 0.91824 0.91622 0.74901 0.88403 0.91323 0.89158 0.87794 0.75864 0.86362 0.87785 0.90597 0.86136 0.77559 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 8.96 127.69 1.14 1.82 16 2 N -0.54 -15.09 4.50 -927.05 -4.17 -19.26 16 3 C 0.06 1.06 4.96 86.31 0.43 1.49 16 4 C -0.12 -1.70 5.25 30.60 0.16 -1.54 16 5 C 0.13 1.68 5.67 86.38 0.49 2.17 16 6 N -0.72 -7.74 5.46 -463.06 -2.53 -10.27 16 7 C 0.52 6.86 7.14 87.66 0.63 7.48 16 8 O -0.58 -12.34 15.89 -3.03 -0.05 -12.39 16 9 C -0.10 -0.72 2.60 -11.40 -0.03 -0.75 16 10 H 0.13 0.40 8.13 -2.38 -0.02 0.38 16 11 C -0.12 -0.72 4.71 30.68 0.14 -0.58 16 12 C 0.11 0.23 7.17 86.49 0.62 0.85 16 13 N -0.71 -5.39 5.45 -467.27 -2.55 -7.93 16 14 C 0.52 7.26 7.71 87.71 0.68 7.94 16 15 O -0.61 -14.65 17.78 -3.04 -0.05 -14.70 16 16 C -0.12 -1.10 5.19 29.71 0.15 -0.94 16 17 C 0.05 1.59 5.45 85.56 0.47 2.06 16 18 C 0.45 20.06 7.47 87.66 0.66 20.71 16 19 O -0.61 -32.97 13.91 -3.09 -0.04 -33.01 16 20 N -0.59 -27.74 5.09 -306.97 -1.56 -29.30 16 21 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.94 -56.36 13.96 21.66 0.30 -56.06 16 25 Si 0.96 38.56 27.74 68.60 1.90 40.46 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 27 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 1.92 5.82 -2.39 -0.01 1.90 16 31 H 0.08 1.97 6.47 -2.38 -0.02 1.95 16 32 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.09 1.42 7.93 -2.39 -0.02 1.40 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.06 6.55 -2.39 -0.02 1.04 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.41 2.59 8.16 -92.71 -0.76 1.84 16 39 H 0.10 0.65 7.89 -2.39 -0.02 0.63 16 40 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.41 2.58 8.80 -92.71 -0.82 1.76 16 44 H 0.12 0.82 7.92 -2.39 -0.02 0.80 16 45 H 0.10 1.02 8.09 -2.38 -0.02 1.01 16 46 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 47 H 0.12 2.88 7.93 -2.39 -0.02 2.87 16 48 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 49 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -88.55 396.84 -3.06 -91.61 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.17 Total: 28.75 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.86 Total: 22.11 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -10.51 Total: -122.83 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.15 Total: -60.10 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.46 kcal Total: -88.55 -3.06 -91.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689796204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.954 kcal (2) G-P(sol) polarization free energy of solvation -88.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds