Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00014 * 2 1 4 4 N 1.34779 * 120.00078 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99936 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46964 * 179.97438 * 5 4 2 7 7 O 1.21271 * 120.00329 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99508 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46851 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99975 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99809 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99936 * 0.02562 * 12 10 9 14 14 C 1.46499 * 119.99953 * 180.02562 * 12 10 9 15 15 C 1.53035 * 109.46011 * 119.99885 * 14 12 10 16 16 C 1.53197 * 109.31441 * 181.38844 * 15 14 12 17 17 N 1.46936 * 108.88860 * 305.29327 * 16 15 14 18 18 C 1.36935 * 120.62903 * 233.67990 * 17 16 15 19 19 H 1.08004 * 119.99817 * 27.39183 * 18 17 16 20 20 C 1.38804 * 120.00238 * 207.39383 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48505 * 109.47002 * 90.00337 * 22 20 18 24 24 H 1.48506 * 109.47209 * 209.99842 * 22 20 18 25 25 H 1.48497 * 109.47373 * 330.00036 * 22 20 18 26 26 C 1.47199 * 118.55490 * 53.53522 * 17 16 15 27 27 C 1.53048 * 109.45920 * 240.06779 * 14 12 10 28 28 H 1.09006 * 109.47313 * 269.99934 * 1 2 3 29 29 H 1.09000 * 109.47297 * 30.00145 * 1 2 3 30 30 H 1.09005 * 109.47290 * 150.00342 * 1 2 3 31 31 H 0.96998 * 120.00283 * 0.02562 * 4 2 1 32 32 H 1.09011 * 109.46884 * 60.00575 * 5 4 2 33 33 H 1.08999 * 109.47525 * 300.00554 * 5 4 2 34 34 H 0.96998 * 120.00541 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46820 * 60.00356 * 9 8 6 36 36 H 1.08999 * 109.47292 * 300.00105 * 9 8 6 37 37 H 1.09005 * 109.47000 * 269.99743 * 13 12 10 38 38 H 1.08994 * 109.47190 * 29.99851 * 13 12 10 39 39 H 1.09001 * 109.46833 * 150.00548 * 13 12 10 40 40 H 1.09002 * 109.44878 * 0.03212 * 14 12 10 41 41 H 1.08994 * 109.50151 * 61.43686 * 15 14 12 42 42 H 1.09002 * 109.52726 * 301.35132 * 15 14 12 43 43 H 1.08995 * 109.58688 * 65.14877 * 16 15 14 44 44 H 1.08992 * 109.59155 * 185.43629 * 16 15 14 45 45 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.53355 * 186.67382 * 26 17 16 47 47 H 1.09002 * 109.67913 * 66.37170 * 26 17 16 48 48 H 1.08997 * 109.49500 * 298.56089 * 27 14 12 49 49 H 1.08993 * 109.49476 * 58.62948 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0013 7 8 3.3602 -3.5098 0.0022 8 7 5.4734 -2.8342 0.0016 9 6 5.9617 -4.2154 0.0024 10 6 7.4688 -4.2154 0.0032 11 8 8.0751 -3.1650 0.0027 12 7 8.1426 -5.3825 0.0035 13 6 7.4101 -6.6513 0.0025 14 6 9.6076 -5.3825 0.0049 15 6 10.1163 -6.1043 1.2548 16 6 11.6478 -6.0721 1.2704 17 7 12.1484 -6.6324 0.0077 18 6 13.0563 -7.6574 0.0106 19 1 13.0895 -8.3470 0.8412 20 6 13.9341 -7.8102 -1.0538 21 7 14.1384 -6.8118 -1.8868 22 14 14.8253 -9.4327 -1.3041 23 1 14.0085 -10.3171 -2.1736 24 1 16.1393 -9.1814 -1.9488 25 1 15.0366 -10.0894 0.0109 26 6 11.6501 -6.0700 -1.2581 27 6 10.1186 -6.1022 -1.2454 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6959 -2.0073 0.0005 32 1 4.0095 -0.6528 0.8896 33 1 4.0089 -0.6539 -0.8904 34 1 6.1037 -2.0969 0.0013 35 1 5.5985 -4.7297 -0.8874 36 1 5.5983 -4.7288 0.8926 37 1 7.2275 -6.9663 1.0299 38 1 6.4582 -6.5208 -0.5121 39 1 7.9997 -7.4108 -0.5110 40 1 9.9705 -4.3547 0.0061 41 1 9.7744 -7.1391 1.2418 42 1 9.7329 -5.6055 2.1449 43 1 11.9906 -5.0427 1.3747 44 1 12.0174 -6.6666 2.1059 45 1 14.7521 -6.9184 -2.6304 46 1 12.0212 -6.6652 -2.0924 47 1 11.9931 -5.0406 -1.3626 48 1 9.7766 -7.1370 -1.2348 49 1 9.7363 -5.6017 -2.1350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690024660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -82.665766 kcal Electronic energy + Delta-G solvation = -29426.273940 eV Core-core repulsion = 25196.186682 eV Total energy + Delta-G solvation = -4230.087259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78936 -40.11456 -39.31447 -37.59920 -35.32122 -35.06806 -34.69806 -32.61290 -31.08605 -30.43627 -29.81620 -28.80107 -27.04599 -26.59113 -24.83595 -22.28604 -22.14894 -21.09640 -21.02248 -19.76582 -18.97347 -18.27066 -17.25411 -17.04000 -16.76353 -16.62148 -16.37297 -15.95379 -15.78843 -15.25809 -15.14057 -14.77875 -14.16091 -13.92096 -13.84035 -13.66527 -13.56277 -13.24339 -13.21632 -13.07626 -13.01290 -12.77741 -12.56158 -12.48756 -12.38419 -12.26440 -11.55760 -11.19200 -10.88963 -10.78916 -10.53986 -10.42926 -10.40589 -10.27495 -10.16082 -9.98506 -9.78322 -9.71371 -9.60860 -9.56238 -8.64717 -8.43685 -6.75746 -5.84199 -3.26562 2.04752 2.20723 2.23776 2.43083 2.86040 3.16754 3.34263 3.41368 3.42624 4.14080 4.24762 4.42838 4.44804 4.77331 4.80545 4.89692 4.93452 4.96136 4.99176 5.07509 5.21444 5.29861 5.35536 5.37610 5.41828 5.54771 5.61683 5.75806 5.80203 5.83374 5.99153 6.10023 6.23234 6.39169 6.45494 6.53898 6.69480 6.74750 6.88231 6.96938 7.03672 7.25393 7.33098 7.58508 7.63833 7.74348 7.75671 7.99219 8.38528 9.14807 9.78117 10.34945 11.24711 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037029 B = 0.001701 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.983663 B =16457.404181 C =16638.897906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.513 3.487 7 O -0.541 6.541 8 N -0.710 5.710 9 C 0.102 3.898 10 C 0.504 3.496 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.070 3.930 14 C 0.144 3.856 15 C -0.137 4.137 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.416 0.584 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.255 0.745 46 H 0.092 0.908 47 H 0.021 0.979 48 H 0.059 0.941 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 6.433 3.623 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.376 5.376 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.419 6.419 8 N -0.366 5.366 9 C -0.026 4.026 10 C 0.291 3.709 11 O -0.419 6.419 12 N -0.332 5.332 13 C -0.073 4.073 14 C 0.043 3.957 15 C -0.177 4.177 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.046 3.954 27 C -0.185 4.185 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.255 0.745 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.039 0.961 48 H 0.077 0.923 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.795 7.053 3.489 26.014 hybrid contribution 0.590 -1.104 -0.206 1.268 sum -24.205 5.949 3.283 25.141 Atomic orbital electron populations 1.21865 0.91000 1.05135 1.05037 1.20865 0.90833 0.82973 0.75348 1.90751 1.70793 1.31392 1.49549 1.45832 1.05845 1.10071 1.75897 1.21033 0.82540 0.93852 1.05409 1.20469 0.82311 0.91278 0.76034 1.90703 1.55176 1.45900 1.50119 1.45626 1.07176 1.09070 1.74683 1.21172 0.92039 0.84545 1.04807 1.20387 0.89297 0.84299 0.76905 1.90701 1.69668 1.30868 1.50659 1.48116 1.08000 1.05453 1.71623 1.21871 0.96798 0.86471 1.02174 1.21282 0.75985 1.01868 0.96613 1.22363 0.99592 0.99967 0.95815 1.20865 0.89926 0.96780 0.90438 1.44144 1.48284 1.39694 0.99345 1.19189 1.09969 1.03043 1.06151 0.91548 1.25042 0.97183 0.97478 0.99879 1.70026 1.37732 1.29099 1.17768 0.86283 0.78838 0.83612 0.77984 1.21459 1.21742 1.20426 1.20810 0.86356 0.97594 0.90622 1.22567 1.01255 0.99457 0.95266 0.88617 0.88636 0.89929 0.74917 0.87971 0.87931 0.74509 0.88182 0.88215 0.92232 0.91274 0.89879 0.88520 0.91991 0.92938 0.96192 0.92407 0.93546 0.89024 0.96067 0.92274 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.30 36.00 0.37 -0.34 16 2 C 0.51 4.21 7.94 -10.99 -0.09 4.12 16 3 O -0.55 -6.85 17.10 5.56 0.10 -6.75 16 4 N -0.72 -5.26 5.53 -61.47 -0.34 -5.59 16 5 C 0.10 0.74 6.15 -5.19 -0.03 0.71 16 6 C 0.51 4.57 7.90 -10.98 -0.09 4.48 16 7 O -0.54 -6.04 15.67 5.57 0.09 -5.95 16 8 N -0.71 -6.39 5.53 -61.47 -0.34 -6.73 16 9 C 0.10 0.95 4.71 -5.19 -0.02 0.93 16 10 C 0.50 6.43 7.74 -10.98 -0.09 6.34 16 11 O -0.54 -8.66 14.99 5.55 0.08 -8.57 16 12 N -0.60 -7.73 2.76 -173.88 -0.48 -8.21 16 13 C 0.07 0.67 9.33 59.85 0.56 1.22 16 14 C 0.14 2.35 2.48 -67.89 -0.17 2.19 16 15 C -0.14 -2.25 5.34 -26.61 -0.14 -2.39 16 16 C 0.15 2.97 6.51 -3.70 -0.02 2.94 16 17 N -0.59 -14.25 3.01 -172.10 -0.52 -14.77 16 18 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 19 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.65 11.18 55.49 0.62 -25.03 16 22 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.17 3.97 5.33 -3.56 -0.02 3.95 16 27 C -0.15 -2.61 5.31 -26.61 -0.14 -2.75 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.41 2.61 7.44 -40.82 -0.30 2.31 16 32 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.42 3.69 7.44 -40.82 -0.30 3.38 16 35 H 0.10 0.85 7.40 -51.93 -0.38 0.47 16 36 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 39 H 0.08 0.86 6.46 -51.93 -0.34 0.52 16 40 H 0.10 1.81 6.90 -51.93 -0.36 1.45 16 41 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.04 6.73 -51.93 -0.35 0.69 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -34.25 396.44 -7.65 -41.90 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.69 Total: 3.11 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -0.11 Total: 14.51 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -1.06 Total: -60.34 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.27 Total: -21.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.25 -7.65 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690024660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.762 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds