Wall clock time and date at job start Sat Apr 11 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 120.00014 * 2 1 4 4 N 1.34779 * 120.00078 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99936 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46964 * 179.97438 * 5 4 2 7 7 O 1.21271 * 120.00329 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99508 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46851 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99975 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99809 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99936 * 0.02562 * 12 10 9 14 14 C 1.46499 * 119.99953 * 180.02562 * 12 10 9 15 15 C 1.53035 * 109.46011 * 119.99885 * 14 12 10 16 16 C 1.53197 * 109.31441 * 181.38844 * 15 14 12 17 17 N 1.46936 * 108.88860 * 305.29327 * 16 15 14 18 18 C 1.36935 * 120.62903 * 233.67990 * 17 16 15 19 19 H 1.08004 * 119.99817 * 27.39183 * 18 17 16 20 20 C 1.38804 * 120.00238 * 207.39383 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48505 * 109.47002 * 90.00337 * 22 20 18 24 24 H 1.48506 * 109.47209 * 209.99842 * 22 20 18 25 25 H 1.48497 * 109.47373 * 330.00036 * 22 20 18 26 26 C 1.47199 * 118.55490 * 53.53522 * 17 16 15 27 27 C 1.53048 * 109.45920 * 240.06779 * 14 12 10 28 28 H 1.09006 * 109.47313 * 269.99934 * 1 2 3 29 29 H 1.09000 * 109.47297 * 30.00145 * 1 2 3 30 30 H 1.09005 * 109.47290 * 150.00342 * 1 2 3 31 31 H 0.96998 * 120.00283 * 0.02562 * 4 2 1 32 32 H 1.09011 * 109.46884 * 60.00575 * 5 4 2 33 33 H 1.08999 * 109.47525 * 300.00554 * 5 4 2 34 34 H 0.96998 * 120.00541 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46820 * 60.00356 * 9 8 6 36 36 H 1.08999 * 109.47292 * 300.00105 * 9 8 6 37 37 H 1.09005 * 109.47000 * 269.99743 * 13 12 10 38 38 H 1.08994 * 109.47190 * 29.99851 * 13 12 10 39 39 H 1.09001 * 109.46833 * 150.00548 * 13 12 10 40 40 H 1.09002 * 109.44878 * 0.03212 * 14 12 10 41 41 H 1.08994 * 109.50151 * 61.43686 * 15 14 12 42 42 H 1.09002 * 109.52726 * 301.35132 * 15 14 12 43 43 H 1.08995 * 109.58688 * 65.14877 * 16 15 14 44 44 H 1.08992 * 109.59155 * 185.43629 * 16 15 14 45 45 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.53355 * 186.67382 * 26 17 16 47 47 H 1.09002 * 109.67913 * 66.37170 * 26 17 16 48 48 H 1.08997 * 109.49500 * 298.56089 * 27 14 12 49 49 H 1.08993 * 109.49476 * 58.62948 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0013 7 8 3.3602 -3.5098 0.0022 8 7 5.4734 -2.8342 0.0016 9 6 5.9617 -4.2154 0.0024 10 6 7.4688 -4.2154 0.0032 11 8 8.0751 -3.1650 0.0027 12 7 8.1426 -5.3825 0.0035 13 6 7.4101 -6.6513 0.0025 14 6 9.6076 -5.3825 0.0049 15 6 10.1163 -6.1043 1.2548 16 6 11.6478 -6.0721 1.2704 17 7 12.1484 -6.6324 0.0077 18 6 13.0563 -7.6574 0.0106 19 1 13.0895 -8.3470 0.8412 20 6 13.9341 -7.8102 -1.0538 21 7 14.1384 -6.8118 -1.8868 22 14 14.8253 -9.4327 -1.3041 23 1 14.0085 -10.3171 -2.1736 24 1 16.1393 -9.1814 -1.9488 25 1 15.0366 -10.0894 0.0109 26 6 11.6501 -6.0700 -1.2581 27 6 10.1186 -6.1022 -1.2454 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6959 -2.0073 0.0005 32 1 4.0095 -0.6528 0.8896 33 1 4.0089 -0.6539 -0.8904 34 1 6.1037 -2.0969 0.0013 35 1 5.5985 -4.7297 -0.8874 36 1 5.5983 -4.7288 0.8926 37 1 7.2275 -6.9663 1.0299 38 1 6.4582 -6.5208 -0.5121 39 1 7.9997 -7.4108 -0.5110 40 1 9.9705 -4.3547 0.0061 41 1 9.7744 -7.1391 1.2418 42 1 9.7329 -5.6055 2.1449 43 1 11.9906 -5.0427 1.3747 44 1 12.0174 -6.6666 2.1059 45 1 14.7521 -6.9184 -2.6304 46 1 12.0212 -6.6652 -2.0924 47 1 11.9931 -5.0406 -1.3626 48 1 9.7766 -7.1370 -1.2348 49 1 9.7363 -5.6017 -2.1350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690024660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:58 Heat of formation + Delta-G solvation = -109.015513 kcal Electronic energy + Delta-G solvation = -29427.416551 eV Core-core repulsion = 25196.186682 eV Total energy + Delta-G solvation = -4231.229869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.64240 -41.00106 -40.09936 -39.03345 -36.66764 -35.82866 -35.43050 -34.31823 -32.14535 -31.60007 -31.35698 -29.62023 -27.97142 -27.49974 -26.41852 -23.90219 -23.69278 -21.80058 -21.65572 -21.06161 -20.27970 -19.04577 -18.70750 -18.10836 -17.67899 -17.36696 -17.27844 -16.87466 -16.70367 -16.61443 -16.06177 -15.89357 -15.52187 -15.38568 -14.90991 -14.78847 -14.71119 -14.32122 -14.13019 -14.09301 -14.04857 -13.88319 -13.45139 -13.30363 -13.21638 -13.10697 -13.00997 -12.91520 -12.61292 -12.53733 -12.09244 -11.97944 -11.90485 -11.47913 -11.36914 -11.27489 -11.10074 -10.95834 -10.57432 -10.41308 -10.23008 -9.65961 -8.73043 -7.88322 -5.33650 1.34525 1.44943 1.47439 1.49234 1.49878 1.58397 1.59632 2.03619 2.47593 2.51394 3.27544 3.31257 3.52192 3.64302 3.88071 3.94818 4.03913 4.16647 4.23664 4.30362 4.30844 4.34415 4.35785 4.45750 4.55383 4.63979 4.66393 4.68962 4.72840 4.84171 4.97674 5.01779 5.05539 5.07097 5.08278 5.14082 5.26012 5.29936 5.44735 5.52224 5.63461 5.69286 6.25867 6.32599 6.37552 6.47444 6.91493 6.99408 7.12863 7.16955 7.83107 8.36042 9.18879 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037029 B = 0.001701 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.983663 B =16457.404181 C =16638.897906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.099 3.901 6 C 0.522 3.478 7 O -0.561 6.561 8 N -0.711 5.711 9 C 0.111 3.889 10 C 0.504 3.496 11 O -0.579 6.579 12 N -0.599 5.599 13 C 0.064 3.936 14 C 0.154 3.846 15 C -0.120 4.120 16 C 0.142 3.858 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.179 3.821 27 C -0.128 4.128 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.417 0.583 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.007 0.993 44 H 0.062 0.938 45 H 0.250 0.750 46 H 0.059 0.941 47 H -0.010 1.010 48 H 0.070 0.930 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.995 4.917 4.551 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.029 4.029 6 C 0.308 3.692 7 O -0.440 6.440 8 N -0.366 5.366 9 C -0.016 4.016 10 C 0.292 3.708 11 O -0.459 6.459 12 N -0.330 5.330 13 C -0.078 4.078 14 C 0.051 3.949 15 C -0.160 4.160 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.226 1.226 25 H -0.192 1.192 26 C 0.053 3.947 27 C -0.168 4.168 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.256 0.744 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.008 0.992 48 H 0.088 0.912 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.682 5.491 4.446 28.570 hybrid contribution 1.481 -0.598 -0.457 1.661 sum -26.201 4.894 3.989 26.951 Atomic orbital electron populations 1.21904 0.87732 1.06322 1.06405 1.21608 0.92404 0.82228 0.74028 1.90729 1.72059 1.33031 1.52030 1.45861 1.05777 1.10261 1.75109 1.21050 0.82889 0.93061 1.05865 1.20534 0.81923 0.91411 0.75297 1.90694 1.55563 1.46548 1.51227 1.45656 1.07283 1.09102 1.74513 1.21179 0.89035 0.85017 1.06378 1.20936 0.90649 0.83460 0.75740 1.90695 1.70743 1.32264 1.52229 1.48014 1.06430 1.07070 1.71511 1.22152 0.97454 0.84403 1.03791 1.20824 0.78589 0.99861 0.95626 1.22141 0.96303 1.00923 0.96626 1.21014 0.92695 0.95787 0.88946 1.44389 1.48352 1.39641 1.00792 1.19549 1.09920 1.03552 1.06081 0.91078 1.25808 0.98440 1.00409 0.99971 1.70194 1.38760 1.31028 1.18361 0.85254 0.77141 0.79852 0.78113 1.21028 1.22552 1.19192 1.20573 0.89725 0.94926 0.89502 1.22280 0.97249 1.00519 0.96705 0.87016 0.88580 0.87603 0.74145 0.87492 0.87574 0.74438 0.86572 0.86381 0.90378 0.88317 0.90554 0.91297 0.90797 0.90871 0.97481 0.91946 0.94138 0.92226 0.99181 0.91170 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 10.30 71.23 0.73 -0.29 16 2 C 0.51 7.80 7.94 87.65 0.70 8.50 16 3 O -0.60 -14.90 17.10 -3.03 -0.05 -14.95 16 4 N -0.71 -9.37 5.53 -466.77 -2.58 -11.95 16 5 C 0.10 1.36 6.15 85.63 0.53 1.89 16 6 C 0.52 8.26 7.90 87.66 0.69 8.96 16 7 O -0.56 -11.13 15.67 -3.00 -0.05 -11.18 16 8 N -0.71 -11.40 5.53 -466.77 -2.58 -13.98 16 9 C 0.11 1.75 4.71 85.63 0.40 2.15 16 10 C 0.50 11.84 7.74 87.66 0.68 12.51 16 11 O -0.58 -18.19 14.99 -3.04 -0.05 -18.24 16 12 N -0.60 -14.02 2.76 -822.42 -2.27 -16.29 16 13 C 0.06 0.97 9.33 127.77 1.19 2.16 16 14 C 0.15 4.90 2.48 45.02 0.11 5.01 16 15 C -0.12 -3.73 5.34 30.67 0.16 -3.56 16 16 C 0.14 5.70 6.51 86.36 0.56 6.26 16 17 N -0.61 -29.75 3.01 -698.39 -2.10 -31.85 16 18 C -0.26 -13.96 9.59 84.03 0.81 -13.15 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 21 N -0.94 -55.14 11.18 21.65 0.24 -54.90 16 22 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C 0.18 8.53 5.33 86.31 0.46 8.99 16 27 C -0.13 -4.55 5.31 30.67 0.16 -4.39 16 28 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.42 4.47 7.44 -92.71 -0.69 3.78 16 32 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 6.91 7.44 -92.71 -0.69 6.22 16 35 H 0.12 1.53 7.40 -2.39 -0.02 1.52 16 36 H 0.12 1.51 8.11 -2.39 -0.02 1.49 16 37 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.10 0.95 6.44 -2.39 -0.02 0.93 16 39 H 0.08 1.31 6.46 -2.39 -0.02 1.30 16 40 H 0.07 2.61 6.90 -2.39 -0.02 2.60 16 41 H 0.07 2.15 7.72 -2.39 -0.02 2.14 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 47 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 48 H 0.07 2.36 6.73 -2.39 -0.02 2.35 16 49 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -76.74 396.44 -0.20 -76.94 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.40 Total: 17.80 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 7.61 Total: 32.66 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -9.29 Total: -128.97 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.14 Total: -44.37 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -76.74 -0.20 -76.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690024660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -76.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds